Phylogenetic Analysis of Korean Native Goats Based on the Mitochondrial Cytochrome b Gene
![]() |
Kim, Jae-Hwan
(National Institute of Animal Science, RDA)
Byun, Mi-Jeong (National Institute of Animal Science, RDA) Ko, Yeoung-Gyu (National Institute of Animal Science, RDA) Kim, Sung-Woo (National Institute of Animal Science, RDA) Kim, Sang-Woo (National Institute of Animal Science, RDA) Do, Yoon-Jung (National Institute of Animal Science, RDA) Kim, Myung-Jick (National Institute of Animal Science, RDA) Yoon, Sei-Hyung (National Institute of Animal Science, RDA) Choi, Seong-Bok (National Institute of Animal Science, RDA) |
1 | Thompson, J. D., Higgins, D. G. and Gibson, T. I. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:4673- 4680. DOI ScienceOn |
2 | Vila, C., Leonard, J. A., Gotherstrom, A., Marklund, S., Sandberg, K., Liden, K., Wayne, R. K. and Ellegern, H. 2001. Widespread origins of domestic horse lineages. Science 291:474-477. DOI ScienceOn |
3 | Yap, F. C., Yan, Y. J., Loon, K. T., Zhen, J. L., Kamau, N. W. and Kumaran, J. V. 2010. Phylogenetic analysis of different breeds of domestic chickens in selected area of Peninsular Malaysia inferred from partial cytochrome b gene information and RAPD markers. Anim. Biotechnol. 21:226-240. DOI ScienceOn |
4 | Zeder, M. A. and Hesse, B. 2000. The initial domestication of goats (Capra hircus) in the Zagros Mountain 10,000 years ago. Science 287:2254-2257. DOI ScienceOn |
5 | Serrano, M., Calvo, J. J., Martinez, M., Marcos-Carcavilla, A., Cuevas, J., Gonzalez, C., Jurado, J. J. and Diez de Tejada, P. 2009. Microsatellite based genetic diversity and population structure of the endangered Spanish Guadarrama goat breed. BMC Genetics 10:61 |
6 | Souza, C. A., Paiva, S. R., Pereira, R. W., Guimarães, S. E., Dutra, W. M., Murata, L. S. and Mariante, A. S. 2009. Iberian origin of Brazilian local pig breeds based on Cytochrome b (MT-CYB) sequence. Anim. Genet. 40:756-762. DOI ScienceOn |
7 | Stock, F., Edwards, C. J., Bollonqino, R., Finlay, E. K., Burger, J. and Bradley, D. G. 2009. Cytochrome b sequences of ancient cattle and wild ox support phylogenetic complexity in the ancient and modern bovine populations. Anim. Genet. 40:694-700. DOI ScienceOn |
8 | Sultana, S., Mannen, H. and Tsuji, S. 2003. Mitochondrial DNA diversity of Pakistani goats. Anim. Genet. 34:417-421. DOI ScienceOn |
9 | Suwit, A., Nomura, K., Oishi, T. and Amano, T. 2010. Goat genetic resources and breeding strategies in Thailand. Anim. Genet. 38: 41-48. DOI |
10 | Takada, T., Kikkawa, Y., Yonekkawa, H., Kawakami, S. and Amano, T. 1997. Bezoar (Capra aegagrus) is a matriarchal candidate for ancestor of domestic goat (Capra hircus): evidence from the mitochondrial DNA diversity. Biochem. Genet. 35:315-326. DOI ScienceOn |
11 | Takahashi, H., Nyamsamba, D., Mandakh, B., Zagdsuren, Y., Amano, T., Nomura, K., Yokohama, M., Ito, S. and Minezawa, M. 2008 Genetic structure of Mongolian goat populations using microsatellite loci analysis. Asian-Aust. J. Anim. Sci. 21:947-953. 과학기술학회마을 DOI |
12 | Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. and Kumar, S. 2011. MEGA5: molecular evolutionary genetic analysis using maximum likelihood evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. DOI ScienceOn |
13 | Martin-Burriel, I., Rodellar, C., Canon, J., Cortes, O., Dunner, S., Landi, V., Martínez-Martínez, A., Gama, L. T., Ginja, C., Penedo, M. C. T., Sanz, A., Zaragoza, P. and Delgado, J. V. 2011. Genetic diversity, structure, and breed relationships in Iberian cattle. J. Anim. Sci. 89:593-906. |
14 | Liu, Y. P., Cao, S. X., Chen, S. Y., Yao, Y. G. and Liu, T. Z. 2009. Genetic diversity of Chinese domestic goat based on the mitochondrial DNA sequence variation. J. Anim. Breed. Genet. 126:80-89. DOI ScienceOn |
15 | MacHugh, D. E. and Bradley, D. G. 2001. Livestock genetic origins: goats buck the trend. Proc. Natl. Acad. Sci. USA 98:5382-5384. DOI ScienceOn |
16 | Mannen, H., Nagata, Y. and Tsuji, S. 2001. Mitochondrial DNA reveal that domestic goat (Capra hircus) are genetically affected by two subspecies of bezoar (Capra aegagurus). Biochem. Genet. 39:145-154. DOI ScienceOn |
17 | Mason, I. L. 1984. Evolution of domesticated Animal. Longman, London. |
18 | Naderi, S., Rezaei, H. R., Taberlet, P., Zundel, S., Rafat, S. A., Naghash, H. R., El-Barody, M. A. A., Ertugrul, O. and Pompanon, F. 2007. Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity. PLoS ONE 10:e1012. |
19 | Odahara, S., Chung, H. P., Choi, S. H., Yu, S. L., Sasazaki, S., Mannen, H., Park, C. S. and Lee, J. H. 2005. Mitochondrial DNA diversity of Korean native goats. J. Anim. Science 19:482-485. |
20 | Porter, V. 1996. Goats of the world. Farming Press, Ipswich, UK. |
21 | Saitou, N. and Nei, M. 1987. The neighbor‐joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406. |
22 | Savolainen, P., Zhang, Y. P., Luo, J., Lundeberg, J. and Leitner, T. 2002. Genetic evidence for an East Asian origin of domestic dogs. Science 298:1610-1613. |
23 | Chen, S., Fan, B., Liu, B., Yu, M., Zhao, S., Zhu, M., Xiong, T. and Li, K. 2006. Genetic variations of 13 indigenous Chinese goat breeds on cytochrome b gene sequences. Biochem. Genet. 44:89-99. |
24 | Berthouly, C., Maillard, J. C., Doan, L. P., Van, T. N., BedHom, B., Leroy, G., Thanh, H. H., Laloë, D., Bruneau, N., Chi, C. V., Dang, V. N., Verrier, E. and Rognon, X. 2010. Revealing fine scale subpopulation structure in the Vietnamese H'mong cattle breed for conservation purposes. BMC Genetics 11:45. |
25 | Birren, B., Green, E. D., Klapholz, S., Myers, R. M. and Roskams, J. 1997. Genome analysis: A Laboratory Manual (USA: Cold Spring Harbor Laboratory Press). |
26 | Chen, S. Y., Su, Y. H., Wu, S. F., Sha, T. and Zhang, Y. P. 2005. Mitochondrial diversity and phylogeographic structure of Chinese domestic goats. Mol. Phylogenet. Evol. 37:804-814. DOI ScienceOn |
27 | Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791. DOI ScienceOn |
28 | Hasegawa, M., Kishino, K. and Yano, T. 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174. DOI |
29 | Hiendleder, S., Kaupe, B., Wassmuth, R. and Janke, A. 2002. Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for domestication from two different subspecies. Proc. R. Soc. Lond. B 269:893-904. DOI ScienceOn |
30 | Joshi, M. B., Rout, P. K., Mandal, A. K., Tyler-Smith, C., Singh, L. and Thangaraj, K. 2004. Phylogeography and origin of Indian domestic goats. Mol. Biol. Evol. 21:454-462. |
31 | Kim, J. H., Cho, C. Y., Choi, S. B., Cho, Y. M., Yeon, S. H. and Yang, B. S. 2011. mtDNA diversity and phylogenetic analysis of Korean native goats. Korean J. Life Sci. 21:1329-1335. 과학기술학회마을 DOI ScienceOn |
32 | Amills, M., Capote, J., Tomas, A., Kelly, L., Obexer-Ruff, G., Angiolillo, A. and Sanchez, A. 2004. Strong phylogeographic relationships among three goat breeds from the Canary Islands. J. Dairy Res. 71:257-262. DOI ScienceOn |
![]() |