Genetic diversity and population structure of European button mushroom (Agaricus bisporus) using SSR markers |
Shin, Hye-Ran
(Department of Industrial Plant Science and Technology, Chungbuk National University)
An, Hyejin (Department of Industrial Plant Science and Technology, Chungbuk National University) Bang, Jun Hyoung (Department of Industrial Plant Science and Technology, Chungbuk National University) Kim, Jun Je (Department of Industrial Plant Science and Technology, Chungbuk National University) Han, Seahee (Department of Industrial Plant Science and Technology, Chungbuk National University) Lee, Hwa-Yong (Department of Forest Science, Chungbuk National University) Chung, Jong-Wook (Department of Industrial Plant Science and Technology, Chungbuk National University) |
1 | An H, Jo IH, Oh YL, Jang KY, Kong WS, Sung JK, So YS, Chung JW. 2019. Molecular characterization of 170 new gDNA-SSR markers for genetic diversity in button mushroom (Agaricus bisporus). Mycobiology 47: 527-532. DOI |
2 | Amend A, Garbelotto M, Fang Z, Keeley S. 2010. Isolation by landscape in populations of a prized edible mushroom Tricholoma matsutake. Conserv Genet 11: 795-802. DOI |
3 | Barroso G, Sonnenberg ASM, Van Griensven LJLD, Labarere J. 2000. Molecular cloning of a widely distributed microsatellite core sequence from the cultivated mushroom Agaricus bisporus. Fungal Genet Biol 31: 115-123. DOI |
4 | Callac P. 1995. Breeding of edible fungi with emphasis on the variability among French genetic resources of Agaricus bisporus. Can J Bot 73: S980-S986. DOI |
5 | Callac P, Theochari I, Kerrigan RW. 2002. The germplasm of Agaricus bisporus: Main results after ten years of collecting in France, in Greece, and in North America. In G. Paroussi, D. Voyiatzis, E. Paroussis (ed.), II Balkan Symposium on Vegetables and Potatoes. Greece. 49-55. |
6 | Choi SJ, Lee YS, Kim JK, Kim JK, Lim SS. 2010. Physiological activities of extract from edible mushrooms. J Korean Soc Food Sci Nutr 39: 1087-1096. DOI |
7 | Du QZ, Wang BW, Wei ZZ, Zhang DQ, Li BL. 2012. Genetic diversity and population structure of Chinese white poplar (Populus tomentosa) revealed by SSR markers. J Hered 103: 853-862. DOI |
8 | Elliott TJ. 1985. Genetics and breeding of species of Agaricus. In P. B. Flegg, D. M. Spencer, D. A. Wood (ed.), Biology and Technology of the Cultivated Mushroom, Wiley. England. 111-139. |
9 | Fisher R. 1930. The genetical theory of natural selection. Oxford University Press. England. p. 360. |
10 | Foulongene-Oriol M, Remi D, Cathy S, Christine D, Aurelien B, Anne R, Savoie JM. 2011. Comparative linkage mapping in the white button mushroom Agaricus bisporus provides foundation for breeding management. Curr Genet 57: 39-50. DOI |
11 | Lee HY, Moon S, Ro HS, Chung JW, Ryu H. 2020. Analysis of genetic diversity and population structure of wild strains and cultivars using genomic SSR markers in Lentinula edodes. Mycobiology 48: 115-121. DOI |
12 | Fu Y, Wang X, Li D, Liu Y, Song B, Zhang C, Wang Q, Chen M, Zhang Z, Li Y. 2016. Identification of resistance to wet bubble disease and genetic diversity in wild and cultivated strains of Agaricus bisporus. Int J Mol Sci 17: 1568. DOI |
13 | Gao W, Baar JJP, Maliepaard C, Visser RGF, Zhang J, Sonnenberg ASM. 2016. Multi-trait QTL analysis for agronomic and quality characters of Agaricus bisporus (button mushroom). AMB Express 6: 67. DOI |
14 | Greenbaum G, Templeton AR, Zarmi Y, Bar-David S. 2014. Allelic richness following population founding events - A stochastic modeling framework incorporating gene flow and genetic drift. PLOS ONE 9: e115203. DOI |
15 | Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33: 1870-1874. DOI |
16 | Lee HY, An HJ, Oh YL, Jang GY, Kong WS, Ryu HJ, Cheong JW. 2019. Assessment of genetic diversity and population structure of commercial button mushroom (Agaricus bisporus) strains in Korea. J Mushroom 17: 171-178. DOI |
17 | Li YC, Korol AB, Fahima T, Beiles A, Nevo E. 2002. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol 11: 2453-2465. DOI |
18 | Moore AJ, Challen MP, Warmer PJ, Elliott TJ. 2001. RAPD discrimination of Agaricus bisporus mushroom cultivars. Appl Microbiol Biotechnol 55: 742-749. DOI |
19 | Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and researchan update. Bioinfornatics 28: 2537-2539. DOI |
20 | Pritchard JK, Stephens M, Donelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959. DOI |
21 | Sharareh R, Pourianfar HR, Janpoor J. 2016. Collection and identification of Iranian wild mushrooms: towards establishment of a mushroom bio-bank. J Adv Res 4: 256-260. |
22 | Raper CA, Raper JR, Miller RE. 1972. Genetic analysis of the life cycle of Agaricus bisporus. Mycologia 64: 1088-1117. DOI |
23 | Savoie JM, Foulongne-Oriol M, Barroso G, Callac P. 2013. Genetics and genomics of cultivated mushrooms, application to breeding of Agarics. In F. Kempken (ed.), Agricultural Applications, Springer-Verlag. Germany. 3-33. |
24 | Simon RR, Phillips KM, Horst RL, Munro IC. 2011. Vitamin D mushrooms: Comparison of the composition of button mushrooms (Agaricus bisporus) treated postharvest with UVB light or sunlight. J Agric Food Chem 59: 8724-8732. DOI |
25 | Sonnenberg ASM, Johan JPB, Patrick MH, Brian L, Wei G, Amrah W, Jurriaan JM. 2011. Breeding and strain protection in the button mushroom Agaricus bisporus. In J. M. Savoie, M. Foulongne-Oriol, M. Largeteau, G. Barroso (ed.), Proceedings of the 7th International Conference on Mushroom Biology and Mushroom Products. Arcachon, France. 7-15. |
26 | Summerbell RC, Castle AJ, Horgen PA, Anderson JB. 1989. Inheritance of restriction fragment length polymeophisms in Agaricus brunnescens. Genetics 123: 293-300. DOI |
27 | Wang ZS, Chen MY, Cai ZX, Liao JH, Li HR, Guo ZJ, Lu ZH. 2011. DNA fingerprinting of genetic diversity of Agaricus bisporus. In J. M. Savoie, M. Foulongne-Oriol, M. Largeteau, G. Barroso (ed.), Proceedings of the 7th International Conference on Mushroom Biology and Mushroom Products, France. 1-8. |
28 | Wright S. 1921. Systems of mating. I. The biometric relations between parent and offspring. Genetics 6: 111-123. DOI |
29 | Xu J, Kerrigan RW, Callac P, Horgen PA, Anderson JB. 1997. Genetic structure of natural populations of Agaricus bisporus, the commercial button mushroom. J Hered 88: 482-488. DOI |
30 | Xiang X, Li C, Li L, Bian Y, Kwan HS, Nong W, Cheung MK, Xiao Y. 2016. Genetic diversity and population structure of Chinese Lentinula edodes revealed by InDel and SSR markers. Mycol Prog 15: 37. DOI |
31 | Xu J, Kerrigan RW, Sonnenberg ASM, Callac P, Horgen PA, Anderson JB. 1998. Mitochondrial DNA variation in natural populations of the mushroom Agaricus bisporus. Mol Ecol 7: 19-33. DOI |