DOI QR코드

DOI QR Code

Identification of eleven species of the Pleuronectidae family using DNA-based techniques

  • Eun-Mi Kim (Biotechnology Research Division, National Institute of Fisheries Science) ;
  • Mi Nan Lee (Biotechnology Research Division, National Institute of Fisheries Science) ;
  • Chun-Mae Dong (Biotechnology Research Division, National Institute of Fisheries Science) ;
  • Eun Soo Noh (Biotechnology Research Division, National Institute of Fisheries Science) ;
  • Young-Ok Kim (Biotechnology Research Division, National Institute of Fisheries Science)
  • 투고 : 2023.10.30
  • 심사 : 2023.12.14
  • 발행 : 2023.11.30

초록

Flatfish are one of the largest families in the order Pleuronectiformes and are economically important edible marine fish species. However, they have similar morphological characteristics leading to challenges in classifying correctly, which may result in mislabeling and illegal sales, such as fraudulent labeling of processed food. Therefore, accurate identification is important to ensure the quality and safety of domestic markets in Korea. Species-specific primers were prepared from the mainly consumed eleven species of the order Pleuronectiformes. To rapidly identify the 11 flatfish species, a highly efficient, rapid, multiplex polymerase chain reaction (PCR) with species-specific primers was developed. Species-specific primer sets were designed for the mitochondrial DNA cytochrome c oxidase subunit I gene. Species-specific multiplex PCR (MSS-PCR) either specifically amplified a PCR product of a unique size or failed. This MSS-PCR analysis is easy to perform and yields reliable results in less time than the previous Sanger sequencing methods. This technique could be a powerful tool for the identification of the 11 species b the family Pleuronectidae and can contribute to the prevention of falsified labeling and protection of consumer rights.

키워드

과제정보

This work was supported by the National Institute of Fisheries Science, Ministry of Oceans and Fisheries, South Korea (No. 2023018, No. 2023023).

참고문헌

  1. Acar C, Ishizaki S, Nagashima Y. Toxicity of the lessepsian pufferfish Lagocephalus sceleratus from eastern Mediterranean coasts of Turkey and species identification by rapid PCR amplification. Eur Food Res Technol. 2017;243:49-57. https://doi.org/10.1007/s00217-016-2721-1
  2. Axayacatl RO, Juan PCG. Molecular identification of dolphinfish species (genus Coryphaena) using multiplex haplotype-specific PCR of mitochondrial DNA. Ichthyol Res. 2008;55:389-93. https://doi.org/10.1007/s10228-008-0040-7
  3. Cohen NJ, Deeds JR, Wong ES, Hanner RH, Yancy HF, White KD, et al. Public health response to puffer fish (tetrodotoxin) poisoning from mislabeled product. J Food Prot. 2009;72:810-7. https://doi.org/10.4315/0362-028X-72.4.810
  4. Hsieh CH, Chang WT, Chang HC, Hsieh HS, Chung YH, Hwang DF, et al. Puffer fish-based commercial fraud identification in a segment of cytochrome b region by PCR-RFLP analysis. Food Chem. 2010;121:1305-11. https://doi.org/10.1016/j.foodchem.2010.02.004
  5. Hsieh YW, Hwang DF. Molecular phylogenetic relationships of puffer fish inferred from partial sequences of cytochrome b gene and restriction fragment length polymorphism analysis. J Agric Food Chem. 2004;52:4159-65. https://doi.org/10.1021/jf035462l
  6. Kang JH, Noh ES, Park JY, An CM, Choi JH, Kim JK, et al. Rapid origin determination of the northern mauxia shrimp (Acetes chinensis) based on allele specific polymerase chain reaction of partial mitochondrial 16S rRNA gene. Asian-Australas J Anim Sci. 2015;28:568-72. https://doi.org/10.5713/ajas.14.0613
  7. Kim IS, Lee WO. Synopsis of the suborder Tetraodontoidei (Pisces; Tetraodontiformes) from Korea. Korean J Ichthyol. 1990;2:1-27.
  8. Kim KH, Lee HY, Kim YS, Kim MR, Jung YK, Lee JH, et al. Development of species-specific PCR to determine the animal raw material. J Food Hyg Saf. 2014;29:347-55. https://doi.org/10.13103/JFHS.2014.29.4.347
  9. Kim WJ, Kong HJ, Kim YO, Nam BH, Kim KK. Development of RAPD-SCAR and RAPD-generated PCR-RFLP markers for identification of four Anguilla eel species. Anim Cells Syst. 2009;13:179-86. https://doi.org/10.1080/19768354.2009.9647210
  10. Koh BRD, Kim JY, Na HM, Park SD, Kim YH. Development of species-specific multiplex PCR assays of mitochondrial 12S rRNA and 16S rRNA for the identification of animal species. Korean J Vet Serv. 2011;34:417-28. https://doi.org/10.7853/kjvs.2011.34.4.417
  11. Kwun HJ, Kim JK. Validation of morphology-based identification of two cynoglossidae larvae using mitochondrial DNA. Korean J Fish Aquat Sci. 2010;43:482-8.
  12. Kwun HJ, Kim JK. Re-identification of two tonguefishes (Pleuronectiformes) from Korea using morphological and molecular analyses. Korean J Fish Aquat Sci. 2016;49:208-13.
  13. Lee SJ, Kim JK, Ryu JH, Yu HJ, Ji HS, Im YJ, et al. Molecular identification and morphological description of larvae for ten species of the family Pleuronectidae (Pleuronectiformes, PISCES) from Korea. J Korean Soc Fish Ocean Technol. 2019;55:335-48. https://doi.org/10.3796/KSFOT.2019.55.4.335
  14. Lin WF, Hwang DF. A multiplex PCR assay for species identification of raw and cooked bonito. Food Control. 2008;19:879-85. https://doi.org/10.1016/j.foodcont.2007.08.015
  15. Matsui S, Nakayama K, Kai Y, Yamashita Y. Genetic divergence among three morphs of Acentrogobius pflaumii (Gobiidae) around Japan and their identification using multiplex haplotype-specific PCR of mitochondrial DNA. Ichthyol Res. 2012;59;216-22. https://doi.org/10.1007/s10228-012-0276-0
  16. Noh ES, Kang HS, An CM, Park JY, Kim EM, Kang JH. Rapid and specific identification of genus Cynoglossus by multiplex PCR assays using species-specific derived from the COI region. J Life Sci. 2016;26:1007-14. https://doi.org/10.5352/JLS.2016.26.9.1007
  17. Noh ES, Lee MN, Kim EM, Park JY, Noh JK, An CM, et al. Development of a multiplex PCR assay for rapid identification of Larimichthys polyactis, L. crocea, Atrobucca nibe, and Pseudotolithus elongates. J Life Sci. 2017;27:746-53.
  18. Rasmussen RS, Morrissey MT. DNA-based methods for the identification of commercial fish and seafood species. Compr Rev Food Sci Food Saf. 2008;7:280-95. https://doi.org/10.1111/j.1541-4337.2008.00046.x
  19. Sezaki K, Itoi S, Watabe S. A simple method to distinguish two commercially valuable eel species in Japan Anguilla japonica and A. Anguilla using polymerase chain reaction strategy with a species-specific primer. Fish Sci. 2005;71:414-21. https://doi.org/10.1111/j.1444-2906.2005.00979.x
  20. Silfvergrip AMC. CITES identification guide to the freshwater eels (Anguillidae): with focus on the European eel Anguilla anguilla. Stockholm: Swedish Environmental Protection Agency Press; 2009.
  21. Ward RD, Hanner R, Hebert PDN. The campaign to DNA barcode all fishes, FISH-BOL. J Fish Biol. 2009;74:329-56. https://doi.org/10.1111/j.1095-8649.2008.02080.x