참고문헌
- Aksoy, M., Pootakham, W., Pollock, S.V., Moseley, J.L., Gonzalez-Ballester, D., and Grossman, A.R. (2013). Tiered regulation of sulfur deprivation responses in Chlamydomonas reinhardtii and identification of an associated regulatory factor. Plant Physiol. 162, 195-211. https://doi.org/10.1104/pp.113.214593
- Beer, L.L., Boyd, E.S., Peters, J.W., and Posewitz, M.C. (2009). Engineering algae for biohydrogen and biofuel production. Curr. Opin. Biotechnol. 20, 264-271. https://doi.org/10.1016/j.copbio.2009.06.002
- Blaby, I.K., Glaesener, A.G., Mettler, T., Fitz-Gibbon, S.T., Gallaher, S.D., Liu, B., Boyle, N.R., Kropat, J., Stitt, M., Johnson, S., et al. (2013). Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant. Plant Cell 25, 4305-4323. https://doi.org/10.1105/tpc.113.117580
- Boyle, N.R., Page, M.D., Liu, B., Blaby, I.K., Casero, D., Kropat, J., Cokus, S.J., Hong-Hermesdorf, A., Shaw, J., Karpowicz, S.J., et al. (2012). Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas. J. Biol. Chem. 287, 15811-15825. https://doi.org/10.1074/jbc.M111.334052
- Bradford, M.M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254. https://doi.org/10.1016/0003-2697(76)90527-3
- Brown, E.P., Normandin, E., Osei-Owusu, N.Y., Mahan, A.E., Chan, Y.N., Lai, J.I., Vaccari, M., Rao, M., Franchini, G., Alter, G., et al. (2015). Microscale purification of antigen-specific antibodies. J. Immunol. Methods 425, 27-36. https://doi.org/10.1016/j.jim.2015.06.005
- Chavez-Valdez, R., Flock, D.L., Martin, L.J., and Northington, F.J. (2016). Endoplasmic reticulum pathology and stress response in neurons precede programmed necrosis after neonatal hypoxia-ischemia. Int. J. Dev. Neurosci. 48, 58-70. https://doi.org/10.1016/j.ijdevneu.2015.11.007
- Chen, J.E. and Smith, A.G. (2012). A look at diacylglycerol acyltransferases (DGATs) in algae. J. Biotechnol. 162, 28-39. https://doi.org/10.1016/j.jbiotec.2012.05.009
- Dean, M., Hamon, Y., and Chimini, G. (2001). The human ATP-binding cassette (ABC) transporter superfamily. J. Lipid Res. 42, 1007-1017. https://doi.org/10.1016/S0022-2275(20)31588-1
- Gargouri, M., Park, J.J., Holguin, F.O., Kim, M.J., Wang, H., Deshpande, R.R., Shachar-Hill, Y., Hicks, L.M., and Gang, D.R. (2015). Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii. J. Exp. Bot. 66, 4551-4566. https://doi.org/10.1093/jxb/erv217
- Georgianna, D.R. and Mayfield, S.P. (2012). Exploiting diversity and synthetic biology for the production of algal biofuels. Nature 488, 329-335. https://doi.org/10.1038/nature11479
- Gonzalez-Ballester, D., Pootakham, W., Mus, F., Yang, W., Catalanotti, C., Magneschi, L., de Montaigu, A., Higuera, J.J., Prior, M., Galvan, A., et al. (2011). Reverse genetics in Chlamydomonas: a platform for isolating insertional mutants. Plant Methods 7, 24. https://doi.org/10.1186/1746-4811-7-24
- Goodson, C., Roth, R., Wang, Z.T., and Goodenough, U. (2011). Structural correlates of cytoplasmic and chloroplast lipid body synthesis in Chlamydomonas reinhardtii and stimulation of lipid body production with acetate boost. Eukaryot. Cell 10, 1592-1606. https://doi.org/10.1128/EC.05242-11
- Harris, E.H. (1989). The Chlamydomonas Sourcebook (California: Academic Press).
- Harris, E.H. (2001). Chlamydomonas as a model organism. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52, 363-406. https://doi.org/10.1146/annurev.arplant.52.1.363
- Higgins, B.T. and VanderGheynst, J.S. (2014). Effects of escherichia coli on mixotrophic growth of Chlorella minutissima and production of biofuel precursors. PLoS One 9, e96807. https://doi.org/10.1371/journal.pone.0096807
- Hu, Q., Sommerfeld, M., Jarvis, E., Ghirardi, M., Posewitz, M., Seibert, M., and Darzins, A. (2008). Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances. Plant J. 54, 621-639. https://doi.org/10.1111/j.1365-313X.2008.03492.x
- Hwang, J.-U., Song, W.-Y., Hong, D., Ko, D., Yamaoka, Y., Jang, S., Yim, S., Lee, E., Khare, D., and Kim, K. (2016). Plant ABC transporters enable many unique aspects of a terrestrial plant's lifestyle. Mol. Plant 9, 338-355. https://doi.org/10.1016/j.molp.2016.02.003
- Ibanez-Salazar, A., Rosales-Mendoza, S., Rocha-Uribe, A., Ramirez-Alonso, J.I., Lara-Hernandez, I., Hernandez-Torres, A., Paz-Maldonado, L.M.T., Silva-Ramirez, A.S., Banuelos-Hernandez, B., and Martinez-Salgado, J.L. (2014). Over-expression of Dof-type transcription factor increases lipid production in Chlamydomonas reinhardtii. J. Biotechnol. 184, 27-38. https://doi.org/10.1016/j.jbiotec.2014.05.003
- Jang, S., Yamaoka, Y., Ko, D.h., Kurita, T., Kim, K., Song, W.Y., Hwang, J.U., Kang, B.H., Nishida, I., and Lee, Y. (2015). Characterization of a Chlamydomonas reinhardtii mutant defective in a maltose transporter. J. Plant Biol. 58, 344-351. https://doi.org/10.1007/s12374-015-0377-1
- Jones, D.T., Taylor, W.R., and Thornton, J.M. (1992). The rapid generation of mutation data matrices from protein sequences. Bioinformatics 8, 275-282. https://doi.org/10.1093/bioinformatics/8.3.275
- Kang, B.H. (2010). Electron microscopy and high-pressure freezing of Arabidopsis. In Methods in Cell Biology, J. Spence, ed. (Amsterdam, The Netherlands: Elsevier), pp. 259-283.
- Katoh, K. and Standley, D.M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30, 772-780. https://doi.org/10.1093/molbev/mst010
- Kim, S., Yamaoka, Y., Ono, H., Kim, H., Shim, D., Maeshima, M., Martinoia, E., Cahoon, E.B., Nishida, I., and Lee, Y. (2013). AtABCA9 transporter supplies fatty acids for lipid synthesis to the endoplasmic reticulum. Proc. Natl. Acad. Sci. U. S. A. 110, 773-778. https://doi.org/10.1073/pnas.1214159110
- Kim, Y., Terng, E.L., Riekhof, W.R., Cahoon, E.B., and Cerutti, H. (2018). Endoplasmic reticulum acyltransferase with prokaryotic substrate preference contributes to triacylglycerol assembly in Chlamydomonas. Proc. Natl. Acad. Sci. U. S. A. 115, 1652-1657. https://doi.org/10.1073/pnas.1715922115
- Kong, F., Burlacot, A., Liang, Y., Legeret, B., Alseekh, S., Brotman, Y., Fernie, A.R., Krieger-Liszkay, A., Beisson, F., Peltier, G., et al. (2018). Interorganelle communication: peroxisomal malate Dehydrogenase2 connects lipid catabolism to photosynthesis through redox coupling in Chlamydomonas. Plant Cell 30, 1824-1847. https://doi.org/10.1105/tpc.18.00361
-
Kong, F., Liang, Y., Legeret, B., Beyly-Adriano, A., Blangy, S., Haslam, R.P., Napier, J.A., Beisson, F., Peltier, G., and Li-Beisson, Y. (2017). Chlamydomonas carries out fatty acid
$\beta$ -oxidation in ancestral peroxisomes using a bona fide acyl‐CoA oxidase. Plant J. 90, 358-371. https://doi.org/10.1111/tpj.13498 - Kumar, S., Stecher, G., and Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33, 1870-1874. https://doi.org/10.1093/molbev/msw054
- Lee, J.H., Lin, H., Joo, S., and Goodenough, U. (2008). Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family. Cell 133, 829-840. https://doi.org/10.1016/j.cell.2008.04.028
- Li, N., Gugel, I.L., Giavalisco, P., Zeisler, V., Schreiber, L., Soll, J., and Philippar, K. (2015). FAX1, a novel membrane protein mediating plastid fatty acid export. PLoS Biol. 13, e1002053. https://doi.org/10.1371/journal.pbio.1002053
- Li, N., Zhang, Y., Meng, H., Li, S., Wang, S., Xiao, Z., Chang, P., Zhang, X., Li, Q., Guo, L., et al. (2019). Characterization of fatty acid exporters involved in fatty acid transport for oil accumulation in the green alga Chlamydomonas reinhardtii. Biotechnol. Biofuels 12, 14. https://doi.org/10.1186/s13068-018-1332-4
- Li, R., Yu, K., and Hildebrand, D.F. (2010). DGAT1, DGAT2 and PDAT expression in seeds and other tissues of epoxy and hydroxy fatty acid accumulating plants. Lipids 45, 145-157. https://doi.org/10.1007/s11745-010-3385-4
- Li, X., Zhang, R., Patena, W., Gang, S.S., Blum, S.R., Ivanova, N., Yue, R., Robertson, J.M., Lefebvre, P.A., Fitz-Gibbon, S.T., et al. (2016). An indexed, mapped mutant library enables reverse genetics studies of biological processes in Chlamydomonas reinhardtii. Plant Cell 28, 367-387. https://doi.org/10.1105/tpc.15.00465
- Liu, J., Lee, Y.Y., Mao, X., and Li, Y. (2017). A simple and reproducible non-radiolabeled in vitro assay for recombinant acyltransferases involved in triacylglycerol biosynthesis. J. Appl. Phycol. 29, 323-333. https://doi.org/10.1007/s10811-016-0949-6
- Merchant, S.S., Prochnik, S.E., Vallon, O., Harris, E.H., Karpowicz, S.J., Witman, G.B., Terry, A., Salamov, A., Fritz-Laylin, L.K., Marechal-Drouard, L., et al. (2007). The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245-250. https://doi.org/10.1126/science.1143609
- Neupert, J., Karcher, D., and Bock, R. (2009). Generation of Chlamydomonas strains that efficiently express nuclear transgenes. Plant J. 57, 1140-1150. https://doi.org/10.1111/j.1365-313X.2008.03746.x
- Ngan, C.Y., Wong, C.H., Choi, C., Yoshinaga, Y., Louie, K., Jia, J., Chen, C., Bowen, B., Cheng, H., and Leonelli, L. (2015). Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae. Nat. Plants 1, 15107. https://doi.org/10.1038/nplants.2015.107
- Nguyen, H.M., Baudet, M., Cuine, S., Adriano, J.M., Barthe, D., Billon, E., Bruley, C., Beisson, F., Peltier, G., Ferro, M., et al. (2011). Proteomic profiling of oil bodies isolated from the unicellular green microalga Chlamydomonas reinhardtii: with focus on proteins involved in lipid metabolism. Proteomics 11, 4266-4273. https://doi.org/10.1002/pmic.201100114
- Nguyen, H.M., Cuine, S., Beyly-Adriano, A., Legeret, B., Billon, E., Auroy, P., Beisson, F., Peltier, G., and Li-Beisson, Y. (2013). The green microalga Chlamydomonas reinhardtii has a single omega-3 fatty acid desaturase that localizes to the chloroplast and impacts both plastidic and extraplastidic membrane lipids. Plant Physiol. 163, 914-928. https://doi.org/10.1104/pp.113.223941
- Piehler, A., Kaminski, W.E., Wenzel, J.J., Langmann, T., and Schmitz, G. (2002). Molecular structure of a novel cholesterol-responsive A subclass ABC transporter, ABCA9. Biochem. Biophys. Res. Commun. 295, 408-416. https://doi.org/10.1016/S0006-291X(02)00659-9
- Pineau, L., Colas, J., Dupont, S., Beney, L., Fleurat-Lessard, P., Berjeaud, J.M., Berges, T., and Ferreira, T. (2009). Lipid-induced ER stress: synergistic effects of sterols and saturated fatty acids. Traffic 10, 673-690. https://doi.org/10.1111/j.1600-0854.2009.00903.x
- Pohl, A., Devaux, P.F., and Herrmann, A. (2005). Function of prokaryotic and eukaryotic ABC proteins in lipid transport. Biochim. Biophys. Acta 1733, 29-52. https://doi.org/10.1016/j.bbalip.2004.12.007
- Radakovits, R., Jinkerson, R.E., Darzins, A., and Posewitz, M.C. (2010). Genetic engineering of algae for enhanced biofuel production. Eukaryot. Cell 9, 486-501. https://doi.org/10.1128/EC.00364-09
- Roth, C.W., Holm, I., Graille, M., Dehoux, P., Rzhetsky, A., Wincker, P., Weissenbach, J., and Brey, P.T. (2003). Identification of the Anopheles gambiae ATP-binding cassette transporter superfamily genes. Mol. Cells 15, 150-158.
- Salas-Montantes, C.J., Gonzalez-Ortega, O., Ochoa-Alfaro, A.E., Camarena-Rangel, R., Paz-Maldonado, L.M.T., Rosales-Mendoza, S., Rocha-Uribe, A., and Soria-Guerra, R.E. (2018). Lipid accumulation during nitrogen and sulfur starvation in Chlamydomonas reinhardtii overexpressing a transcription factor. J. Appl. Phycol. 1-13.
- Schmollinger, S., Muhlhaus, T., Boyle, N.R., Blaby, I.K., Casero, D., Mettler, T., Moseley, J.L., Kropat, J., Sommer, F., Strenkert, D., et al. (2014). Nitrogen-sparing mechanisms in Chlamydomonas affect the transcriptome, the proteome, and photosynthetic metabolism. Plant Cell 26, 1410-1435. https://doi.org/10.1105/tpc.113.122523
- Scott, S.A., Davey, M.P., Dennis, J.S., Horst, I., Howe, C.J., Lea-Smith, D.J., and Smith, A.G. (2010). Biodiesel from algae: challenges and prospects. Curr. Opin. Biotechnol. 21, 277-286. https://doi.org/10.1016/j.copbio.2010.03.005
- Shockey, J.M., Gidda, S.K., Chapital, D.C., Kuan, J.C., Dhanoa, P.K., Bland, J.M., Rothstein, S.J., Mullen, R.T., and Dyer, J.M. (2006). Tung tree DGAT1 and DGAT2 have nonredundant functions in triacylglycerol biosynthesis and are localized to different subdomains of the endoplasmic reticulum. Plant Cell 18, 2294-2313. https://doi.org/10.1105/tpc.106.043695
- Stephens, E., Ross, I.L., King, Z., Mussgnug, J.H., Kruse, O., Posten, C., Borowitzka, M.A., and Hankamer, B. (2010). An economic and technical evaluation of microalgal biofuels. Nat. Biotechnol. 28, 126-128. https://doi.org/10.1038/nbt0210-126
- Stevens, D.R., Purton, S., and Rochaix, J.D. (1996). The bacterial phleomycin resistance geneble as a dominant selectable marker in Chlamydomonas. Mol. Gen. Genet. 251, 23-30.
- Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30, 2725-2729. https://doi.org/10.1093/molbev/mst197
- Tarling, E.J., de Aguiar Vallim, T.Q., and Edwards, P.A. (2013). Role of ABC transporters in lipid transport and human disease. Trends Endocrinol. Metab. 24, 342-350. https://doi.org/10.1016/j.tem.2013.01.006
- Torri, C., Samori, C., Adamiano, A., Fabbri, D., Faraloni, C., and Torzillo, G. (2011). Preliminary investigation on the production of fuels and bio-char from Chlamydomonas reinhardtii biomass residue after bio-hydrogen production. Bioresour. Technol. 102, 8707-8713. https://doi.org/10.1016/j.biortech.2011.01.064
- Tsai, C.H., Warakanont, J., Takeuchi, T., Sears, B.B., Moellering, E.R., and Benning, C. (2014). The protein compromised hydrolysis of triacylglycerols 7 (CHT7) acts as a repressor of cellular quiescence in Chlamydomonas. Proc. Natl. Acad. Sci. U. S. A. 111, 15833-15838. https://doi.org/10.1073/pnas.1414567111
- Tsai, C.H., Zienkiewicz, K., Amstutz, C.L., Brink, B.G., Warakanont, J., Roston, R., and Benning, C. (2015). Dynamics of protein and polar lipid recruitment during lipid droplet assembly in Chlamydomonas reinhardtii. Plant J. 83, 650-660. https://doi.org/10.1111/tpj.12917
- Wang, P., Chen, X., Goldbeck, C., Chung, E., and Kang, B.H. (2017). A distinct class of vesicles derived from the trans-Golgi mediates secretion of xylogalacturonan in the root border cell. Plant J. 92, 596-610. https://doi.org/10.1111/tpj.13704
- Wang, Z.T., Ullrich, N., Joo, S., Waffenschmidt, S., and Goodenough, U. (2009). Algal lipid bodies: stress induction, purification, and biochemical characterization in wild-type and starchless Chlamydomonas reinhardtii. Eukaryot. Cell 8, 1856-1868. https://doi.org/10.1128/EC.00272-09
- Wase, N., Tu, B., Black, P.N., and DiRusso, C.C. (2015). Phenotypic screening identifies Brefeldin A/Ascotoxin as an inducer of lipid storage in the algae Chlamydomonas reinhardtii. Algal Res. 11, 74-84. https://doi.org/10.1016/j.algal.2015.06.002
- Wijffels, R.H. and Barbosa, M.J. (2010). An outlook on microalgal biofuels. Science 329, 796-799. https://doi.org/10.1126/science.1189003
- Yamano, T., Sato, E., Iguchi, H., Fukuda, Y., and Fukuzawa, H. (2015). Characterization of cooperative bicarbonate uptake into chloroplast stroma in the green alga Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. U. S. A. 112, 7315-7320. https://doi.org/10.1073/pnas.1501659112
- Yamaoka, Y., Achard, D., Jang, S., Legeret, B., Kamisuki, S., Ko, D., Schulz-Raffelt, M., Kim, Y., Song, W.Y., and Nishida, I. (2016). Identification of a Chlamydomonas plastidial 2-lysophosphatidic acid acyltransferase and its use to engineer microalgae with increased oil content. Plant Biotechnol. J. 14, 2158-2167. https://doi.org/10.1111/pbi.12572
- Yamaoka, Y., Shin, S., Choi, B.Y., Kim, H., Jang, S., Kajikawa, M., Yamano, T., Kong, F., Legeret, B., Fukuzawa, H., et al. (2019). The bZIP1 Transcription factor regulates lipid remodeling and contributes to ER stress management in Chlamydomonas reinhardtii. Plant Cell 31, 1127-1140. https://doi.org/10.1105/tpc.18.00723
피인용 문헌
- MicroRNA Expression Profile Analysis of Chlamydomonas reinhardtii during Lipid Accumulation Process under Nitrogen Deprivation Stresses vol.9, pp.1, 2022, https://doi.org/10.3390/bioengineering9010006