References
- An, D. S., C. H. Cui, H. G. Lee, L. Wang, S. C. Kim, S. T. Lee, et al. 2010. Identification and characterization of a novel Terrabacter ginsenosidimutans sp. nov. beta-glucosidase that transforms ginsenoside Rb1 into the rare gypenosides XVII and LXXV. Appl. Environ. Microbiol. 76: 5827-5836. https://doi.org/10.1128/AEM.00106-10
- Atlas, R. M. 1993. Handbook of Microbiological Media. L. C. Parks (ed.). CRC Press, Boca Raton, FL, U.S.A
- Attele, A. S., J. A. Wu, and C. S. Yuan. 1999. Ginseng pharmacology: Multiple constituents and multiple actions. Biochem. Pharmacol. 58: 1685-1693. https://doi.org/10.1016/S0006-2952(99)00212-9
- Baek, S. H., J. H. Lim, L. Jin, H. G. Lee, and S. T. Lee. 2011. Novosphingobium sediminicola sp. nov. isolated from freshwater sediment. Int. J. Syst. Evol. Microbiol. 61: 2464-2468. https://doi.org/10.1099/ijs.0.024307-0
- Balkwill, D. L., G. R. Drake, R. H. Reeves, J. K. Fredrickson, D. C. White, D. B. Ringelberg, et al. 1997. Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. Int. J. Syst. Bacteriol. 47: 191-201. https://doi.org/10.1099/00207713-47-1-191
- Buck, J. D. 1982. Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl. Environ. Microbiol. 44: 992-993.
- Cappuccino, J. G. and N. Sherman. 2002. Microbiology: A Laboratory Manual, 6th Ed. Pearson Education, Inc., California.
- Christensen, L. P. 2009. Ginsenosides chemistry, biosynthesis, analysis, and potential health effects. Adv. Food Nutr. Res. 55: 1-99.
- Chun, J., J. H. Lee, Y. Jung, M. Kim, S. Kim, B. K. Kim, and Y. W. Lim. 2007. EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57: 2259-2261. https://doi.org/10.1099/ijs.0.64915-0
- Cui, C. H., T. E. Choi, H. Yu, F. Jin, S. T. Lee, S. C. Kim, and W. T. Im. 2011. Mucilaginibacter composti sp. nov., with ginsenoside converting activity, isolated from compost. J. Microbiol. 49: 393-398. https://doi.org/10.1007/s12275-011-1176-0
- Euzeby, J. P. 1997. List of bacterial names with standing in nomenclature: A folder available on the Internet. Int. J. Syst. Bacteriol. 47: 590-592. https://doi.org/10.1099/00207713-47-2-590
- Ezaki, T., Y. Hashimoto, and E. Yabuuchi. 1989. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39: 224-229. https://doi.org/10.1099/00207713-39-3-224
- Felsenstein, J. 1985. Confidence limit on phylogenies: An approach using the bootstrap. Evolution 39: 783-791. https://doi.org/10.2307/2408678
- Fitch, W. M. 1971. Toward defining the course of evolution: Minimum change for a specific tree topology. Syst. Zool. 20: 406-416. https://doi.org/10.2307/2412116
- Gupta, S. K., D. Lal, and R. Lal. 2009. Novosphingobium panipatense sp. nov. and Novosphingobium mathurense sp. nov., from oil-contaminated soil. Int. J. Syst. Evol. Microbiol. 59: 156-161. https://doi.org/10.1099/ijs.0.65743-0
- Hall, T. A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41: 95-98.
- Hiraishi, A., Y. Ueda, J. Ishihara, and T. Mori. 1996. Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection. J. Gen. Appl. Microbiol. 42: 457-469. https://doi.org/10.2323/jgam.42.457
-
Hong, H., C. H. Cui, J. K. Kim, F. X. Jin, S. C. Kim, and W. T. Im. 2012. Enzymatic biotransformation of ginsenoside
$Rb_1$ and gypenoside XVII into ginsenosides Rd and$F_2$ by recombinant$\beta$ -glucosidase from Flavobacterium johnsoniae. J. Ginseng Res. 36: 418-424. https://doi.org/10.5142/jgr.2012.36.4.418 - Im, W. T., S. Y. Kim, Q. M. Liu, J. E. Yang, S. T. Lee, and T. H. Yi. 2010. Nocardioides ginsengisegetis sp. nov., isolated from soil of a ginseng field. J. Microbiol. 48: 623-628. https://doi.org/10.1007/s12275-010-0001-5
- Jin, F., H. Yu, Y. Fu, D. S. An, W. T. Im, S. T. Lee, and J. A. Teixeira da Silva. 2012. Biotransformation of ginsenosides (Ginseng saponins). Int. J. Biomed. Pharm. Sci. 6: 33-44.
- Kampfer, P., C. C. Young, H. J. Busse, S. Y. Lin, P. D. Rekha, A. B. Arun, et al. 2011. Novosphingobium soli sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 61: 259-263. https://doi.org/10.1099/ijs.0.022178-0
-
Kim, J. K., C. H. Cui, M. H. Yoon, S. C. Kim, and W. T. Im. 2012. Bioconversion of major ginsenosides
$Rg_1$ to minor ginsenoside$F_1$ using novel recombinant ginsenoside hydrolyzing glycosidase cloned from Sanguibacter keddieii and enzyme characterization. J. Biotechnol. 161: 294-301. https://doi.org/10.1016/j.jbiotec.2012.06.021 - Kim, S. K. and J. H. Park. 2011. Trends in ginseng research in 2010. J. Ginseng Res. 35: 389-398. https://doi.org/10.5142/jgr.2011.35.4.389
- Kimura, M. 1983. The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge.
- Lee, J. H., J. Y. Ahn, T. J. Shin, S. H. Choi, B. H. Lee, S. H. Hwang, et al. 2011. Effects of minor ginsenosides, ginsenoside metabolites, and ginsenoside epimers on the growth of Caenorhabditis elegans. J. Ginseng. Res. 35: 375-383. https://doi.org/10.5142/jgr.2011.35.3.375
- Mesbah, M., U. Premachandran, and W. Whitman. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167. https://doi.org/10.1099/00207713-39-2-159
- Minnikin, D. E., P. V. Patel, L. Alshamaony, and M. Goodfellow. 1977. Polar lipid composition in the classification of Nocardia and related bacteria. Int. J. Syst. Bacteriol. 27:104-117. https://doi.org/10.1099/00207713-27-2-104
- Moore, D. D. 1995. Preparation and analysis of DNA, pp. 2-11. In F. W. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (eds.). Current Protocols in Molecular Biology. Wiley, New York, USA
- Park, C. S., M. H. Yoo, K. H. Noh, and D. K. Oh. 2010. Biotransformation of ginsenosides by hydrolyzing the sugar moieties of ginsenosides using microbial glycosidases. Appl. Microbiol. Biotechnol. 87: 9-19. https://doi.org/10.1007/s00253-010-2567-6
- Qu, C. L., Y. P. Bai, X. Q. Jin, Y. T. Wang, K. Zhang, J. Y. You, and H. Q. Zhang. 2009. Study on ginsenosides in different parts and ages of Panax quinquefolius L. Food Chem. 115: 340-346. https://doi.org/10.1016/j.foodchem.2008.11.079
- Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
- Sasser, M. 1990. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. MIDI Technical Note 101. MIDI Inc, Newark, DE, USA.
- Shi, W., Y. T. Wang, J. Li, H. Q. Zhang, and L. Ding. 2007. Investigation of ginsenosides in different parts and ages of Panax ginseng. Food Chem. 102: 664-668. https://doi.org/10.1016/j.foodchem.2006.05.053
- Stackebrandt, E. and B. M. Goebel. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44: 846-849. https://doi.org/10.1099/00207713-44-4-846
- Takeuchi, M., K. Hamana, and A. Hiraishi. 2001. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. 51: 1405-1417.
- Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. https://doi.org/10.1093/molbev/msr121
- Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882. https://doi.org/10.1093/nar/25.24.4876
- Wang, L., D. S. An, S. G. Kim, F. X. Jin, S. C. Kim, S. T. Lee, and W. T. Im. 2012. Ramlibacter ginsenosidimutans sp. nov., with ginsenoside-converting activity. J. Microbiol. Biotechnol. 22: 311-315. https://doi.org/10.4014/jmb.1106.06041
- Wayne, L. G. 1988. International Committee on Systematic Bacteriology: Announcement of the report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Zentralbl. Bakteriol. Mikrobiol. Hyg. A 268: 433-434.
- Yabuuchi, E., I. Yano, H. Oyaizu, Y. Hashimoto, T. Ezaki, and H. Yamamoto. 1990. Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol. Immunol. 34: 99-119. https://doi.org/10.1111/j.1348-0421.1990.tb00996.x
- Zhao, X., J. Wang, J. Li, L. Fu, J. Gao, X. Du, et al. 2009. Highly selective biotransformation of ginsenoside Rb1 to Rd by the phytopathogenic fungus Cladosporium fulvum (syn. Fulvia fulva). J. Ind. Microbiol. Biotechnol. 36: 721-726. https://doi.org/10.1007/s10295-009-0542-y
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