Fisheries and Aquatic Sciences

The Korean Society of Fisheries and Aquatic Science (한국수산과학회)
권호 표지
DOI QR코드

DOI QR Code

Genetic Diversity and Gene Flow Patterns in Pollicipes mitella in Korea Inferred from Mitochondrial DNA Sequence Analysis

  • Yoon, Moongeun (Yangyang Salmon Station, Korea Fisheries Resources Agency) ;
  • Jung, Ju-Yeon (Institute of Marine Living Modified Organisms (iMLMO), Pukyong National University) ;
  • Kim, Dong Soo (Institute of Marine Living Modified Organisms (iMLMO), Pukyong National University)
  • Received : 2012.03.26
  • Accepted : 2013.08.06
  • Published : 2013.12.30
Download PDF
⟨ Previous Next ⟩

Abstract

Genetic diversity and gene flow patterns in Pollicipes mitella were investigated with a nucleotide sequence analysis of 514 base pairs from the mitochondrial cytochrome c oxidase subunit I gene (COI) in 124 samples collected from six Korean populations. In total, 59 haplotypes were defined by 40 variable nucleotide sites in the COI region. The haplotypes had shallow haplotype genealogy and no geographic associations. All populations had high haplotype diversity (0.909 to 0.979) and low nucleotide diversity (0.0055 to 0.0098). The haplotypes with recently diverged nucleotides were distributed by long-range larvae dispersal among regional populations. The pairwise fixation indices ($F_{ST}$) estimated with the exact test and migration rates indicate that substantial gene flow has occurred among populations as a result of sea currents, except between the Uljin (East Sea coast) and other Korean populations. This suggests that significant genetic differentiation and low migration rates have affected the Uljin population.

Keywords

References

  1. Allendorf FW, Hohenlohe PA and Luikart G. 2010. Genomics and the future of conservation genetics. Nat Rev Genet 11, 697-709. http://dx.doi.org/10.1038/nrg2844.
  2. Avise JC. 1994. Molecular Markers, Natural History, and Evolution. Chapman & Hall, New York, US.
  3. Avise JC. 2000. Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, MA, US
  4. Barber PH, Erdmann MV and Palumbi SR. 2006. Comparative phylogeography of three codistributed stomatopods: origins and timing of regional lineage diversification in the coral triangle. Evolution 60, 1825-1839. http://dx.doi.org/10.1111/j.0014-3820.2006.tb00526.x.
  5. Beerli P and Felsenstein J. 2001. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc Natl Acad Sci U S A 98, 4563-4568. http://dx.doi.org/10.1073/pnas.081068098
  6. Chan BKK. 2006. Ecology and biodiversity of rocky intertidal barnacles along a latitudinal gradient; Japan, Taiwan and Hongkong. Publ Seto Mar Biol Lab Spec Publ Ser 8, 1-10.
  7. Chan BKK, Tsang LM and Chu KH. 2007. Morphological and genetic differentiation of the acorn barnacle Tetraclita squamosa (Crustacea, Cirripedia) in East Asia and description of a new species of Tetraclita. Zool Scripta 36, 79-91. http://dx.doi.org/10.1111/j.1463-6409.2007.00260.x.
  8. Cooley SR, Doney SC. 2009. Anticipating ocean acidification's economic consequences for commercial fisheries. Environ Res Lett 4, 024007. http://dx.doi.org/10.1088/1748-9326/4/2/024007.
  9. Dawson MN, Grosberg RK, Stuart YE and Sanford E. 2010. Population genetic analysis of a recent range expansion: mechanisms regulating the poleward range limit in the volcano barnacle Tetraclita rubescens. Mol Ecol 19, 1585-1605. http://dx.doi.org/10.1111/j.1365-294X.2010.04588.x.
  10. Doyle MJ, Morse WW and Kendall AW Jr. 1993. A comparison of larval fish assemblages in the temperate zone of the northeast Pacific and northwest Atlantic Oceans. Bull Mar Sci 53, 588-644.
  11. Excoffier L, Laval G and Schneider S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1, 47-50.
  12. Felsenstein J. 1993. PHYLIP (Phylogeny Interference Package) Version 3.5c. Department of Genetics, Washington State University, Seattle, WA, US.
  13. Gerlach G, Atema J, Kingsford MJ, Black KP and Miller-Sims V. 2007. Smelling home can prevent dispersal of reef fish larvae. Proc Natl Acad Sci U S A 104, 858-863. http://dx.doi.org/10.1073/pnas.0606777104.
  14. Hong SE, Kim JK, Yu JN, Kim KY, Lee CI, Hong KE, Park KY and Yoon MG. 2012. Genetic variation in the asian shore crab Hemigrapsus sanguineus in Korean coastal waters as inferred from mitochondrial DNA sequences. Fish Aquat Sci 15, 49-56. http://dx.doi.org/10.5657/FAS.2012.0049.
  15. Horne JB, van Herwerden L, Choat JH and Robertson DR. 2008. High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Mol Phylogenet Evol 49, 629-638. http://dx.doi.org/10.1016/j.ympev.2008.08.023.
  16. Hsieh HY, Lo WT, Liu DC and Su WC. 2010. Influence of hydrographic features on larval fish distribution during the south-westerly monsoon in the waters of Taiwan, western North Pacific Ocean. J Fish Biol 76, 2521-2539. http://dx.doi.org/10.1111/j.1095-8649.2010.02643.x.
  17. Ichikawa H and Beardsley RC. 2002. The current system in the Yellow and East China Seas. J Oceanog 58, 77-92. https://doi.org/10.1023/A:1015876701363
  18. Kim WJ, Lee CI, Kim HS, Han HS, Jee YJ, Kong HJ, Nam BH, Kim YO, Kim KK, Kim BS, Lee SJ, Hong KE, Yu JN and Yoon M. 2012. Population genetic structure and phytogeography of the ascidian Halocynthia roretzi, along the coasts of Korea and Japan, inferred from mitochondrial DNA sequence analysis. Biochem Syst Ecol 44, 128-135. http://dx.doi.org/10.1016/j.bse.2012.04.020.
  19. Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120. http://dx.doi.org/10.1007/BF01731581.
  20. Klanten OS, Choat JH and van Herwerden L. 2007. Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish. Mar Biol 150, 659-670. http://dx.doi.org/10.1007/s00227-006-0372-7.
  21. Lessios HA, Kane J and Robertson DR. 2003. Phylogeography of the pantropical sea urchin Tripneustes: contrasting patterns of population structure between oceans. Evolution 57, 2026-2036. http://dx.doi.org/10.1554/02-681.
  22. Levitus S, Antonov J I and Boyer TP. 2005, Warming of the World Ocean, 1955-2003, Geophys Res Lett 32, LO2604, doi: 10.1029/2004GRL021592.
  23. Lewis CA. 1975. Development of the gooseneck barnacle Pollicipes polymerus (Cirripedia: Lepadomorpha): fertilization through settlement. Mar Biol 30, 141-153. http://dx.doi.org/10.1007/BF00388507.
  24. Lim JT and Hwang UW. 2006. The complete mitochondrial genome of Pollicipes mitella (Crustacea, Maxillopoda, Cirripedia): non-monophylies of Maxillopoda and Crustacea. Mol Cells 22, 314-322.
  25. Machado-Schiaffino G, Juanes F and Garcia-Vazquez E. 2010. Introgressive hybridization in North American hakes after secondary contact. Mol Phylogenet Evol 55, 552-558. http://dx.doi.org/10.1016/j.ympev.2010.01.034.
  26. McElroy D, Moran P, Bermingham E and Kornfield I. 1993. REAP: An integrated environment for the manipulation and phylogenetic analysis of restriction data. J Hered 83, 157-158.
  27. Molares J, Tilves F, Quintana R, Rodríquez S and Pascual C. 1994. Gametogenesis of Pollicipes cornucopia (Cirripedia: Scalpellomorpha) in north-west Spain. Mar Biol 120, 553-560. http://dx.doi.org/10.1007/BF00350075.
  28. Nei M. 1987. Molecular Evolutionary Genetics. Columbia University Press, New York, US.
  29. Palumbi SR. 1994. Genetic divergence, reproductive isolation, and marine speciation. Annu Rev Ecol Syst 25, 547-572. http://dx.doi.org/10.1146/annurev.ecolsys.25.1.547.
  30. Pickart RS, Spall MA and Lazier JRN. 1997. Mid-depth ventilation in the western boundary current system of the sub-polar gyre. Deep-Sea Res I 44, 1025-1054. http://dx.doi.org/10.1016/S0967-0637(96)00122-7.
  31. Quinteiro J, Rodriguez-Castro J and Rey-Mendez M. 2007. Population genetic structure of the stalked barnacle Pollicipes pollicipes (Gmelin, 1789) in the northeastern Atlantic: influence of coastal currents and mesoscale hydrographic structures. Mar Biol 153, 47-60. http://dx.doi.org/10.1007/s00227-007-0783-0.
  32. Raymond M and Rousset F. 1995. An exact test for population differentiation. Evolution 49, 1280-1283. http://dx.doi.org/10.2307/2410454.
  33. Reece JS, Bowen BW, Joshi K, Goz V and Larson A. 2010. Phylogeography of two moray eels indicates high dispersal throughout the Indo-Pacific. J Hered 101, 391-402. http://dx.doi.org/10.1093/ jhered/esq036.
  34. Rhein M, Stramma L and Send U. 1995. The Atlantic deep western boundary current: water masses and transport near the equator. J Geophys Res 100, 2441-2457. http://dx.doi.org/10.1029/94JC02355.
  35. Rozas J and Rozas R. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput Appl Biosci 13, 307-311.
  36. Saitou N and Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
  37. Sambrook J and Russell DW. 2001. Molecular Cloning: A Laboratory Manual. 3rd ed. Cold Spring Harbor Laboratory Press, New York, US.
  38. Senjyu T. 1999. The Japan Sea intermediate water: its characteristics and circulation. J Oceanogr 55, 111-122. https://doi.org/10.1023/A:1007825609622
  39. Slatkin M and Hudson RR. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129, 555-562.
  40. Sotka EE, Wares JP, Barth JA, Grosberg RK and Palumbi SR. 2004. Strong genetic clines and geographical variation in gene flow in the rocky intertidal barnacle Balanus glandula. Mol Ecol 13, 2143-2156. http://dx.doi.org/10.1111/j.1365-294X.2004.02225.x.
  41. Tajima F and Nei M. 1984. Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol 1, 269-285.
  42. Wilson AC, Cann RL, Carr SM, George M, Gyllensten UB, Helm-Bychowski K, Higuchi RG, Palumbi SR, Prager EM, Sage RD and Stoneking M. 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biol J Linn Soc 26, 375-400. http://dx.doi.org/10.1111/j.1095-8312.1985.tb02048.x.

Cited by

  1. (Liu, 1932) (Rajidae) in the Yellow and East seas based on molecular and morphometric data vol.33, pp.5, 2017, https://doi.org/10.1111/jai.13408