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Identification of host plant species of Balanophora fungosa var. indica from Phnom Bokor National Park of Cambodia using DNA barcoding technique

캄보디아 프놈보콜국립공원의 Balanophora fungosa var. indica의 숙주식물에 대한 DNA barcoding 기법을 통한 동정

  • Kim, Joo Hwan (Department of Biological Science, Daegu University) ;
  • Won, Hyosig (Department of Biological Science, Daegu University)
  • Received : 2013.10.07
  • Accepted : 2013.11.04
  • Published : 2013.12.30

Abstract

During the floristic survey on Phnom Bokor National Park, Kampot, Cambodia, we encountered Balanophora fungosa var. indica, which is a tropical holoparasitic plant. To identify its host species, we collected host roots and trees nearby and tried to identify them using DNA barcoding approach. We applied plastid rbcL and matK gene regions as DNA barcode markers, and successfully amplified and sequenced the markers from 15 host roots and seven tree samples. Obtained host root sequences were identified as Primulaceae, Celastraceae, Myrtaceae, and Oleaceae, while trees nearby are Oleaceae, Myrtaceae, Sapindaceae, Rosaceae, Clusiaceae, Ericaceae, and Lauraceae. At genus level, host species are identified as Myrsine, Euonymus, Syzygium, and Olea, but failed in species discrimination. Myrsine (Primulaceae) and Olea (Oleaceae) are reported here as host species of B. fungosa var. indica for the first time. Further sampling and comparative work, and DNA barcoding will help recognize the biodiversity of the area and host species of Balanophora, together with their evolution.

캄보디아 캄폿주 프놈보콜국립공원에 대한 식물상 조사 중 열대성 전기생식물인 B. fungosa var. indica를 발견하였다. 이들의 숙주를 확인하기 위해 숙주의 뿌리와 더불어 주변에 위치한 목본 식물을 채집하였으며, 이들을 DNA barcoding 방법을 사용하여 동정하였다. DNA barcode 마커로는 엽록체 rbcL 및 matK 유전자 구간을 적용하였으며, 15개의 숙주 뿌리와 7개의 주변 목본식물로부터 성공적으로 PCR 증폭 및 염기서열을 확보하였다. 숙주 뿌리로부터 얻어진 숙주의 염기서열은 앵초과, 노박덩굴과, 도금양과, 그리고 물푸레나무과로 식별되었으며, 주변의 목본식물은 물푸레나무과, 도금양과, 무환자나무과, 장미과, 물레나물과, 철쭉과와 녹나무과였다. 속 수준에서 앵초과는 Myrsine, 노박덩굴과는 Euonymus, 도금양과는 Syzygium, 물푸레나무과는 Olea 등으로 각각 식별되었으나, 종 수준에서의 동정은 불가능하였다. 앵초과 Myrsine와 물푸레나무과 Olea는 본 연구를 통해 최초로 B. fungosa var. indica의 숙주로 확인되었다. 추가적인 채집 조사 및 비교 연구, DNA barcoding을 통해 해당 지역의 생물다양성과 Balanophora속 식물의 숙주 식물 및 진화에 대해 좀더 명확하게 확인이 가능할 것으로 판단된다.

Keywords

References

  1. Azukawa, E. 1982. Balanophoraceae. In Wild Flowers of Japan, vol. 2. Herbaceous Plants. Satake, Y. et al. (eds.), Heibonsha, Tokyo, Japan. Pp. 12-13.
  2. CBOL Plant Working Group. 2009. A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 106: 12794-12797. https://doi.org/10.1073/pnas.0905845106
  3. Chen, J. and J. J. Pipoly III. 1996. Myrsinaceae. In Flora of China. Vol. 15. Wu, C. Y., P. H. Raven, and D. Y. Hong (eds.), Science Press & Missouri Botanical Garden Press, Beijing & St. Louis. Pp. 1-38.
  4. Chen, S., H. Yao, J. Han, C. Liu, J. Song, L. Shi, Y. Zhu, X. Ma, T. Gao, X. Pang, K. Luo, Y. Li, X. Li, X. Jia, Y. Lin, and C. Leon. 2010. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS ONE 5: e8613. https://doi.org/10.1371/journal.pone.0008613
  5. China Plant BOL Group, D.-Z. Li, L.-M. Gao, H.-T. Li, H. Wang, X.-J. Ge, J.-Q. Liu, Z-D. Chen, S.-L. Zhou, S.-L. Chen, J.-B. Yang, C.-X. Fu, C.-X. Zeng, H.-F. Yan, Y.-J. Zhu, Y.-S. Sun, S.-Y. Chen, L. Zhao, K. Wang,, T. Yang, and G.-W. Duan. 2011. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proceedings of the National Academy of Sciences of the United States of America 108: 19641-19646. https://doi.org/10.1073/pnas.1104551108
  6. Eberwein, R., D. L. Nickrent, and A. Weber. 2009. Development and morphology of flowers and inflorescences in Balanophora papuana and B. elongata (Balanophoraceae). American Journal of Botany 96: 1055-1067. https://doi.org/10.3732/ajb.0800289
  7. Ekrem, T., E. Willassen, and E. Stur. 2007. A comprehensive DNA sequence library is essential for identification with DNA barcodes. Molecular Phylogenetics and Evolution 43: 530-542. https://doi.org/10.1016/j.ympev.2006.11.021
  8. Fay, M. F., C. Bayer, W. S. Alverson, A. Y. de Bruijn, and M. W. Chase. 1998. Plastid rbcL sequence data indicate a close affinity between Diegodendron and Bixa. Taxon 47: 43-50. https://doi.org/10.2307/1224017
  9. Fazekas, A. J., K. S. Burgess, P. R. Kesanakurti, S. W. Graham, S. G. Newmaster, B. C. Husband, D. M. Percy, M. Hajibabaei, and S. C. H. Barrett. 2008. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS ONE 3: e2802. https://doi.org/10.1371/journal.pone.0002802
  10. Fu, D.-Z. 2012. The Plant-Dictionary. Qingdao Publishing House, Qingdao, China. Pp. 1520.
  11. Hansen, B. 1972. The genus Balanophora J. R. & G. Forster - a taxonomic monograph. Dansk Botanisk Arkiv 28: 1-189.
  12. Hansen, B. 1973. Balanophoraceae. In Flore du Cambodge, du Laos, et du Vietnam. Vol. 14. Aubreville, A.and J. F. Leroy J.-F. (eds.), Museum National D'Histoire Naturelle, Paris. Pp. 49-58.
  13. Hebert, P. D. N., A. Cywinska, S. L. Ball, J. R. deWaard. 2003. Biological identification through DNA barcodes. Proceedings of the Royal Society, Biological Science Series B. 270: 313-321. https://doi.org/10.1098/rspb.2002.2218
  14. Hooker, J. D. 1856. On the structure and affinities of Balanopho raceae. Transactions of the Linnean Society of London 22: 1-68. https://doi.org/10.1111/j.1096-3642.1856.tb00079.x
  15. Hsiao, S.-C., J. . Mauseth., and C.-I. Peng. 1995. Composite bundle, the host/parasite interface in the holoparasitic angiosperms Langsdorffia and Balanophora (Balanophoraceae). American Journal of Botany 82: 81-91. https://doi.org/10.2307/2445790
  16. Huang, S.-M. and J. Murata. 2003. Balanophoraceae In Flora of China. Vol. 5. We, C. Y., P. H. Raven, and D. Y. Hong (eds.), Science Press & Missouri Botanical Garden Press, Beijing & St. Louis. Pp. 272-276.
  17. Kawakita, A. and M. Kato. 2002. Floral biology and unique pollination system of root holoparasites, Balanophora kuroiwa and B. tobiracola (Balanophoraceae). American Journal of Botany 89: 1164-1170. https://doi.org/10.3732/ajb.89.7.1164
  18. Kress, W. J. and D. L. Erickson. 2007. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2: e508. https://doi.org/10.1371/journal.pone.0000508
  19. Kress, W. J., D. L. Erickson, F. A. Jones, N. G. Swenson, R. Perez, O. Sanjur, and E. Bermingham. 2009. Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proceedings of the National Academy of Sciences of the United States of America 106: 18621-18626. https://doi.org/10.1073/pnas.0909820106
  20. Kress, W. J., K. J. Wurdack, E. A. Zimmer, L. A. Weigt, and D. H. Janzen. 2005. Use of DNA barcodes to identify flowering plants. Proceedings of the National Academy of Sciences of the United States of America 102: 8369-8374. https://doi.org/10.1073/pnas.0503123102
  21. Kujit, J. 1969. The Biology of Parasitic Flowering Plants. University of California Press, Berkeley and Los Angeles, California, USA. Pp. 246.
  22. Lahaye, R., M. van der Bank, D. Bogarin, J. Warner, F. Pupulin, G. Gigot, O. Maurin, S. Duthoit, T. G. Barraclough, and V. Savolainen. 2008. DNA barcoding the floras of biodiversity hotspots. Proceedings of the National Academy of Sciences of the United States of America 105: 2923-2928. https://doi.org/10.1073/pnas.0709936105
  23. Li, F.-W., L.-Y. Kuo, C. J. Rothfels, A. Ebihara, W.-L. Chiou, M. D. Windham, and K. M. Pryer. 2011. rbcL and matK earn two thumbs up as the core DNA barcode for ferns. PLoS One 6: e26597. https://doi.org/10.1371/journal.pone.0026597
  24. Mabberley, D. J. 1997. The Plant Book: A Portable Dictionary of the Vascular Plants, 2nd ed., Cambridge University Press, Cambridge, UK. Pp. 858.
  25. Meng, M., K. E. Hourt, R. Bansok, E. Thol, and D. Ashwell. 2000. Plants. In Cardamom Mountains Biodiversity Survey 2000. Daltry, J. C. and F. Momberg (eds.). Flora & Fauna International, Cambridge, UK. Pp. 31-47.
  26. Newmaster, S. G., A. J. Fazekas, and S. Ragupathy. 2006. DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach. Canadian Journal of Botany 84: 335-441. https://doi.org/10.1139/b06-047
  27. Nickrent, D. L., J. P. Der, and F. E. Anderson. 2005. Discovery of the photosynthetic relatives of the "Maltese mushroom" Cynomorium. BMC Evolutionary Biology 5: 38. https://doi.org/10.1186/1471-2148-5-38
  28. Ricketson, J. M. & I. J. J. Pipoly. 1997. Nomenclatural notes and a synopsis of the genus Myrsine (Myrsinaceae). Sida 17: 579-589.
  29. Ridley, H. N. 1930. The Dispersal of Plants throughout the World. Kent, Ashford, UK.
  30. Sang, T., D. J. Crawford, and T. F. Stuessy. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136. https://doi.org/10.2307/2446155
  31. Su, H.-J., J. Murata, and J.-M. Hu. 2012. Morphology and phylogenetics of two holoparasitic plants, Balanophora japonica and Balanophora yakushimensis (Balanophoraceae), and their hosts in Taiwan and Japan. Journal of Plant Research 125: 317-326. https://doi.org/10.1007/s10265-011-0447-5
  32. Swofford, D. L. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4. Sinauer Associates, Sunderland. Massachusetts.
  33. The Angiosperm Phylogeny Group. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APGIII. Botanical Journal of the Linnean Society 161: 105-121. https://doi.org/10.1111/j.1095-8339.2009.00996.x
  34. Valentini, A., F. Pompanon, and P. Taberlet. 2008. DNA barcoding for ecologists. Trends in Ecology and Evolution 24: 110-117.
  35. Won. H. 2009. Phylogenetic position of Corchoropsis Siebold & Zucc. (Malvaceae s.l.) inferred from plastid DNA sequences. Journal of Plant Biology 52: 411-416. https://doi.org/10.1007/s12374-009-9052-8
  36. Yu, J., J.-H. Xue, and S.-L. Zhou. 2011a. New universal matK primers for DNA barcoding angiosperms. Journal of Systematics and Evolution 49: 176-181. https://doi.org/10.1111/j.1759-6831.2011.00134.x
  37. Yu, W.-B., P.-H. Huang, R. H. Ree, M.-L. Liu, D.-Z. Li, and H. Wang. 2011b. DNA barcoding of Pedicularis L. (Orobanchaceae): evaluating four universal barcode loci in a large and hemiparasitic genus. Journal of Systematics and Evolution 49: 425-437. https://doi.org/10.1111/j.1759-6831.2011.00154.x