Fisheries and Aquatic Sciences

The Korean Society of Fisheries and Aquatic Science (한국수산과학회)
권호 표지
DOI QR코드

DOI QR Code

Complete Mitogenome of the Russian Sturgeon Acipenser gueldenstaedtii (Acipenseriformes; Acipenseridae)

  • Published : 2009.03.31
Download PDF
⟨ Previous Next ⟩

Abstract

Sturgeons and paddlefishes are frequently referred to as 'living fossils' among the actionpterygian lineage. They are increasingly facing threats to their existence because of various anthropogenic pressures. In this study, we present the complete mitogenome sequence of the Russian sturgeon Acipenser gueldenstaedtii (Acipenseriformes; Acipenseridae). The mitogenome showed highly homogeneous molecular features compared to previously known vertebrate mitogenomes. Phylogenetic tree inferred from concatenated protein-coding and tRNA genes unambiguously revealed the monophyly of A. gueldenstaedtii, Acipenser stellatus, and Huso huso. Genetic information of the endangered A. gueldenstaedtii will provide baseline data needed to develop molecular markers for stock identification and assessment of population diversity and also to develop future conservation strategies.

Keywords

References

  1. Anderson, S., A.T. Bankier, B.G. Barrell, M.H. de Bruijn, A.R. Coulson, J. Drouin, I.c. Eperon, D.P. Nierlich, B.A. Roe, F. Sanger, P.H. Schreier, A.J. Smith, R. Staden and I.G. Young. 1981. Sequence and organization of the human mitochondrial genome. Nature, 290, 457-465 https://doi.org/10.1038/290457a0
  2. Amason, u., A. Gullberg, A. Janke, J. Joss and C. Elmerot. 2004. Mitogεnomic ana1yses of deep gnathostome divergences: a fish is a fish. Gene, 333, 61-70 https://doi.org/10.1016/j.gene.2004.02.014
  3. Bemis, w.E., E.K. Findeis and L. Grande. 1997. An overview of Acipenseriforrnes. Environ. Biol. Fishes, 48, 25-71 https://doi.org/10.1023/A:1007370213924
  4. Billard, R. and G. Lecointre. 2001. Biology and conservation of sturgeon and paddlefish. Rev. Fish Biol. Fish., 10, 355-392 https://doi.org/10.1023/A:1012231526151
  5. Birstein, Y.J. 1993. Sturgeons and paddlefishes: threatened fishεs in need of conservation. Conserv. Biol., 773-787 https://doi.org/10.1046/j.1523-1739.1993.740773.x
  6. Birstein， Y.J. and W.E. Bemis. 1997. How many species are there within the genus Acipenser? Environ. Biol. Fishes, 48, 157-163 https://doi.org/10.1023/A:1007354827093
  7. Birstein, V.J., R. Hanner and R. DeSalle. 1997. Phylogeny of the Acipenseriforrnes: cytogenetic and molecular approaches. Environ. Biol. Fishes, 48, 127-155 https://doi.org/10.1023/A:1007366100353
  8. Birstein, Y.J., P. Doukakis and R. DeSalle. 2000. Polyphyly of mtDNA lineages in the Russian sturgeon, Acipenser gμeldenstaedtii: forensic and evolutionaryimplications. Conserv. Genet., 1, 81-88 https://doi.org/10.1023/A:1010141906100
  9. Birstein, Y.J., G. Ruban, A. Ludwig, P. Doukakis and R. DeSalle. 2005. The enigmatic Caspian Sea Russian sturgeon: how many cryptic forrns does it contain? Syst. Biodivers., 3, 203-218 https://doi.org/10.1017/S1477200005001647
  10. Boore, J.L. 1999. Anima1 mitochondrial genomes. Nucleic AcidsRes., 27, 1767-1780 https://doi.org/10.1093/nar/27.8.1767
  11. Boore, J.L., L.L. Daehler and W.M. Brown. 1999. Complete sequence, gene arrangement, and genetic code of mitochondria1 DNA of the cephalochordate Branchiostoma floridae (Amphioxus). Mol. Biol. Evol., 16, 410-418 https://doi.org/10.1093/oxfordjournals.molbev.a026122
  12. Broughton, R.E., J.E. Mi1am and B.A. Roe. 2001. The comp1ete sequence of the zebrafish (Danio rerio) mitochondria1 genome and evo1utionary pattems in vεrtebrate mitochondrial DNA. Genome Res., 11, 1958-1967
  13. Brown, J.R., K. Beckenbach, A.T. Beckenbach and M.J. Smith. 1996. Length variation, heteroplasmy and sequence divergence in the mitochondrial DNA of four species of sturgeon (Acipenser). Genetics, 142, 525-535
  14. Chang, Y. S., F.L. Huang and T.B. Lo. 1994. The complete nucleotide sequencε and gene organization of carp (Cyprinus carpio) mitochondrial genome. J. Mol. Evol., 38, 138-155 https://doi.org/10.1007/BF00166161
  15. C1ayton, D.A. 1991. Nuclear gadgets in mitochondria1 DNA replication and transcription. Trends Biochem. Sci., 16, 107-111 https://doi.org/10.1016/0968-0004(91)90043-U
  16. Doda, J.N., c.T. Wright and D.A. C1ayton. 1981. E1ongation of disp1acement-1oop strands in human and mouse mitochondria1 DNA is arrested near specifictemp1ate sequences. Proc. Natl. Acad. Sci. USA, 78, 6116-6120 https://doi.org/10.1073/pnas.78.10.6116
  17. Gardiner，B.G. 1984. Sturgεons as living fossils. In: Living Fossils, Eldredge, N. and S.M. Stanley, eds. SpringerVerlag, New York, 148-152
  18. Hall, T.A. 1999. BioEdit: a user -friendly biological sequence alignment editor and analysis program for Windows 95/981NT. Nucleic Acids Symp. Scr., 41, 95-98
  19. Inoue, J.G., M. Miya, K. Tsukamoto and M. Nishida. 2003. Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the ‘ancient físh. ’Mol. Phylogenet. Evol., 26, 110-120 https://doi.org/10.1016/S1055-7903(02)00331-7
  20. Krieger，J. and P.A. Fuerst. 2002. Evidence for a slowed rate of molecular 강volution in the order Acipenserifonnes. Mol. Biol. Evol., 19, 891-897 https://doi.org/10.1093/oxfordjournals.molbev.a004146
  21. Krieger, J., A.K. Hett, P.A. Fuerst, V.J. Birstein and A. Ludwig. 2006. Unusual intraindividual variation of the nuclear 18S rRNA gene is widespread within the Acipenseridae. J. Hered., 97, 218-225 https://doi.org/10.1093/jhered/esj035
  22. Lee, W.J. and T.D. Kocher. 1995. Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization. Geneucs，139, 873-887
  23. Lowe, T.M. and S.R. Eddy. 1997. tRNAsean-SE: a program for improved detection of transfer RNA gεnesin genomic sequence. Nucleic Acids Res., 25, 955-964 https://doi.org/10.1093/nar/25.5.955
  24. Ludwig, A., B. May, L. Debus and I. Jenneckens. 2000. Heteroplasmy in the mtDNA control region of sturgeon (Acipenser， Huso and Scaphirhynchus). Genetics，156, 1933-1947
  25. Ludwig, A., N.M. Belfiore，C. Pitra, V. Svirsky and I. Jenneekens. 2001. Genome duplieation events and functional reduction of ploidy levels in sturgeon (Acipenser， Huso and Scaphirhynchus). Genetics, 158, 1203-1215
  26. Ludwig, A., L. Debus, D. Lieckfeldt, I. Wirgin, N. Benecke，I. Jenneckens, P. Williot, J.R. Waldman and C. Pitra. 2002. When the American sea sturgeonswam east. Nature, 419, 447-448 https://doi.org/10.1038/419447a
  27. Ludwig, A., L. Congiu, C. Pitra, J. Fickel, J. Gessner, F. Fontana, T. Patamellos and L. Zanes. 2003. Nonconcordant evolutionary history of matemal and paternaJlineages in Adriatic sturgeon. Mol. Ecol., 12, 3253-3264 https://doi.org/10.1046/j.1365-294X.2003.01999.x
  28. Miya, M., H. Takεshima， H. Endo, N.B. Ishiguro, J.G. Inoue, T. Mukai, T.P. Satoh, M. Yamaguchi, A. Kawaguchi, K. Mabuchi, S.M. Shirai and M. Nishida.2003. Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequεnces. Mol. Phylogenet. Evol., 26, 121-138 https://doi.org/10.1016/S1055-7903(02)00332-9
  29. Nelson, J.S. 2006. Fishcs ofthe World, 4th Ed., John Wilecy & Sons, Hoboken, New Jersey
  30. Ojala，D., J. Montoya and G. Attardi. 1981. tRNA punctuation model of RNA processing in human mitochondria. Nature, 290, 470-474 https://doi.org/10.1038/290470a0
  31. Peng, Z., A. Ludwig, D. Wang, R. Diogo, Q. Wei and S. He. 2007. Age and biogeography of major clades in sturgeons and paddleiishcs (Pisces: Acipenserifonnes). Mol. Phylogenet. Evol., 42, 854-862 https://doi.org/10.1016/j.ympev.2006.09.008
  32. Pikitch, E.K., P. Doukakis, L. Lauck, P. Chakrabarty and D.L. Erickson. 2005. Status, trends and management of sturgeon and paddlefish fishεries. Fish Fish., 6, 233-265 https://doi.org/10.1111/j.1467-2979.2005.00190.x
  33. Posada, D. and K.A. CrandalJ. 1998. MODELTEST: testing the model of DNA substitution. Bioinfonnatics, 14, 817-818
  34. Saccone, C., C. De Giorgi, C. Gissi, G. Pesole and A. Reyes. 1999. Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene，238,195-209 https://doi.org/10.1016/S0378-1119(99)00270-X
  35. Sambrook, J. and D.W. Russell. 2001. Molecular Cloning: A Laboratory Manual, Third Ed., Cold Spring Harbor Laboratory Press，New York
  36. Swolfford, D.L. 2002. PAUP*: Phylogenetic Analysis Using Parsimony (*and Othεr Methods), Ver. 4.0b10, Sinauer Assocìates, Sunderland, Massachusetts
  37. Tiedemann, R., K. Moll, K.B. Paulus, M. Scheer, P. Williot, R. Bartel, J. Gessner and F. Kirschbaum. 2007. Atlantic sturgeons (Acipenser sturio, Acipenser oxyrinchus): American females successful in Europe. Naturwissenschagten, 94, 213-217 https://doi.org/10.1007/s00114-006-0175-1
  38. Tzeng, C.S., C.F. Hui, S.C. Shen and P.c. Huang. 1992. The complete nucleotide sequencε of the Crossostoma lαcustre mitochondrial genome: conservation and variations among vεrtεbrates. Nucleic Acids Res., 20,4853-4858 https://doi.org/10.1093/nar/20.18.4853
  39. Wang, X., J. Wang, S. Hε and R.L. Mayden. 2007. The complete mitochondrial genome of the Chinese hook snout carp Opsariichthys bidens (Actinopterygii:Cypriniformes) and an alternative pattern of mito-genomic evolution in vertebrate. Gene, 399, 11-19 https://doi.org/10.1016/j.gene.2007.04.019
  40. Xia, X. and Z. Xie. 2001. DAMBE: Data analysis in molecular biology and evolution. J. Hered., 92, 371-373 https://doi.org/10.1093/jhered/92.4.371
  41. Zardoya, R., A. Garrido-PertieITa and J.M. Bautista. 1995. The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss. J. Mol. Evol., 41 , 942-951 https://doi.org/10.1007/BF00173174

Cited by

  1. Embryonic Development of Siberian Sturgeon Acipenser baerii under Hatchery Conditions: An Image Guide with Embryological Descriptions vol.16, pp.1, 2013, https://doi.org/10.5657/FAS.2013.0015
  2. Effects of Incubation Temperature on Egg Development, Hatching and Pigment Plug Evacuation in Farmed Siberian Sturgeon Acipenser baerii vol.16, pp.1, 2009, https://doi.org/10.5657/fas.2013.0025