Acknowledgement
Supported by : Korea Research Foundation
References
- Akira, S., Uematsu, S., and Takeuchi, O. (2006). Pathogen recognition and innate immunity. Cell 124, 783-801 https://doi.org/10.1016/j.cell.2006.02.015
- An, J., and Rettig, M.B. (2005). Mechanism of von Hippel-Lindau protein-mediated suppression of nuclear factor kappa B activity. Mol. Cell. Biol. 25, 7546-7556 https://doi.org/10.1128/MCB.25.17.7546-7556.2005
- An, J., Fisher, M., and Rettig, M.B. (2005). VHL expression in renal cell carcinoma sensitizes to bortezomib (PS-341). through an NF-kappaB-dependent mechanism. Oncogene 24, 1563-1570 https://doi.org/10.1038/sj.onc.1208348
- Bolstad, B.M., Irizarry, R.A., Astrand, M., and Speed, T.P. (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19, 185-193 https://doi.org/10.1093/bioinformatics/19.2.185
- Bosco, M.C., Puppo, M., Santangelo, C., Anfosso, L., Pfeffer, U., Fardin, P., Battaglia, F., and Varesio, L. (2006). Hypoxia modifies the transcriptome of primary human monocytes: modulation of novel immune-related genes and identification of CCchemokine ligand 20 as a new hypoxia-inducible gene. J. Immunol. 177, 1941-1955 https://doi.org/10.4049/jimmunol.177.3.1941
- Chi, J.T., Wang, Z., Nuyten, D.S., Rodriguez, E.H., Schaner, M.E., Salim, A., Wang, Y., Kristensen, G.B., Helland, A., Borresen-Dale, A.L., et al. (2006). Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers. PLoS Med. 3, e47 https://doi.org/10.1371/journal.pmed.0030047
- Choi, J.W., Park, S.C., Kang, G.H., Liu, J.O., and Youn, H.D. (2004). Nur77 activated by hypoxia-inducible factor-1alpha overproduces proopiomelanocortin in von Hippel-Lindau-mutated renal cell carcinoma. Cancer Res. 64, 35-39 https://doi.org/10.1158/0008-5472.CAN-03-0145
- Dennis, G., Jr., Sherman, B.T., Hosack, D.A., Yang, J., Gao, W., Lane, H.C., and Lempicki, R.A. (2003). DAVID: database for annotation, visualization, and integrated discovery. Genome Biol. 4, P3 https://doi.org/10.1186/gb-2003-4-5-p3
- Dery, M.A., Michaud, M.D., and Richard, D.E. (2005). Hypoxiainducible factor 1: regulation by hypoxic and non-hypoxic activators. Int. J. Biochem. Cell Biol. 37, 535-540 https://doi.org/10.1016/j.biocel.2004.08.012
- Ebert, B.L., Firth, J.D., and Ratcliffe, P.J. (1995). Hypoxia and mito chondrial inhibitors regulate expression of glucose transporter-1 via distinct Cis-acting sequences. J. Biol. Chem. 270, 29083-29089 https://doi.org/10.1074/jbc.270.49.29083
- Franovic, A., Gunaratnam, L., Smith, K., Robert, I., Patten, D., and Lee, S. (2007). Translational up-regulation of the EGFR by tumor hypoxia provides a nonmutational explanation for its over-expression in human cancer. Proc. Natl. Acad. Sci. USA 104, 13092-13097 https://doi.org/10.1073/pnas.0702387104
- Frede, S., Stockmann, C., Freitag, P., and Fandrey, J. (2006). Bacterial lipopolysaccharide induces HIF-1 activation in human monocytes via p44/42 MAPK and NF-kappaB. Biochem. J. 396, 517-527 https://doi.org/10.1042/BJ20051839
- Gotea, V., and Ovcharenko, I. (2008). DiRE: identifying distant regulatory elements of co-expressed genes. Nucleic Acids Res. 36, W133-139 https://doi.org/10.1093/nar/gkn300
- Gross, C., Dubois-Pot, H., and Wasylyk, B. (2008). The ternary complex factor Net/Elk-3 participates in the transcriptional response to hypoxia and regulates HIF-1 alpha. Oncogene 27, 1333-1341 https://doi.org/10.1038/sj.onc.1210736
- Hong, S.W., Kim, S., and Lee, D.K. (2008). The role of Bach2 in nucleic acid-triggered antiviral innate immune responses. Biochem. Biophys. Res. Commun. 365, 426-432 https://doi.org/10.1016/j.bbrc.2007.10.183
- Hwang, I.I., Watson, I.R., Der, S.D., and Ohh, M. (2006). Loss of VHL confers hypoxia-inducible factor (HIF).-dependent resistance to vesicular stomatitis virus: role of HIF in antiviral response. J. Virol. 80, 10712-10723 https://doi.org/10.1128/JVI.01014-06
- Irizarry, R.A., Bolstad, B.M., Collin, F., Cope, L.M., Hobbs, B., and Speed, T.P. (2003). Summaries of affymetrix genechip probe level data. Nucleic Acids Res. 31, e15 https://doi.org/10.1093/nar/gng015
- Kilani, M.M., Mohammed, K.A., Nasreen, N., Tepper, R.S., and Antony, V.B. (2004). RSV causes HIF-1alpha stabilization via NO release in primary bronchial epithelial cells. Inflammation 28, 245-251 https://doi.org/10.1007/s10753-004-6047-y
- Kim, K.S., Rajagopal, V., Gonsalves, C., Johnson, C., and Kalra, V.K. (2006). A novel role of hypoxia-inducible factor in cobalt chloride- and hypoxia-mediated expression of IL-8 chemokine in human endothelial cells. J. Immunol. 177, 7211-7224 https://doi.org/10.4049/jimmunol.177.10.7211
- Kim, H.A., Kim, K., Kim, S.W., and Lee, M. (2007a). Transcriptional and post-translational regulatory system for hypoxia specific gene expression using the erythropoietin enhancer and the oxygen-dependent degradation domain. J. Control. Release 121, 218-224 https://doi.org/10.1016/j.jconrel.2007.05.036
- Kim, H.Y., Kim, Y.H., Nam, B.H., Kong, H.J., Kim, H.H., Kim, Y.J., An, W.G., and Cheong, J. (2007b). HIF-1alpha expression in response to lipopolysaccaride mediates induction of hepatic inflammatory cytokine TNFalpha. Exp. Cell Res. 313, 1866-1876 https://doi.org/10.1016/j.yexcr.2007.03.009
- Lee, M.S., and Kim, Y.J. (2007). Pattern-recognition receptor signaling initiated from extracellular, membrane, and cytoplasmic space. Mol. Cells 23, 1-10 https://doi.org/10.1016/j.molcel.2006.06.008
- Liu, X.H., Yu, E.Z., Li, Y.Y., and Kagan, E. (2006). HIF-1alpha has an anti-apoptotic effect in human airway epithelium that is mediated via Mcl-1 gene expression. J. Cell. Biochem. 97, 755-765 https://doi.org/10.1002/jcb.20683
- Manalo, D.J., Rowan, A., Lavoie, T., Natarajan, L., Kelly, B.D., Ye, S.Q., Garcia, J.G., and Semenza, G.L. (2005). Transcriptional regulation of vascular endothelial cell responses to hypoxia by HIF-1. Blood 105, 659-669 https://doi.org/10.1182/blood-2004-07-2958
- Masson, N., Willam, C., Maxwell, P.H., Pugh, C.W., and Ratcliffe, P.J. (2001). Independent function of two destruction domains in hypoxia-inducible factor-alpha chains activated by prolyl hydroxylation. EMBO J. 20, 5197-5206 https://doi.org/10.1093/emboj/20.18.5197
- Nasimuzzaman, M., Waris, G., Mikolon, D., Stupack, D.G., and Siddiqui, A. (2007). Hepatitis C virus stabilizes hypoxia-inducible factor 1alpha and stimulates the synthesis of vascular endothelial growth factor. J. Virol. 81, 10249-10257 https://doi.org/10.1128/JVI.00763-07
- Peyssonnaux, C., Cejudo-Martin, P., Doedens, A., Zinkernagel, A.S., Johnson, R.S., and Nizet, V. (2007). Cutting edge: Essential role of hypoxia inducible factor-1alpha in development of lipopolysaccharide-induced sepsis. J. Immunol. 178, 7516-7519 https://doi.org/10.4049/jimmunol.178.12.7516
- Samanta, M., Iwakiri, D., Kanda, T., Imaizumi, T., and Takada, K. (2006). EB virus-encoded RNAs are recognized by RIG-I and activate signaling to induce type I IFN. EMBO J. 25, 4207-4214 https://doi.org/10.1038/sj.emboj.7601314
- Sonna, L.A., Cullivan, M.L., Sheldon, H.K., Pratt, R.E., and Lilly, C.M. (2003). Effect of hypoxia on gene expression by human hepatocytes (HepG2). Physiol. Genomics 12, 195-207 https://doi.org/10.1152/physiolgenomics.00104.2002
- Ui-Tei, K., Naito, Y., Takahashi, F., Haraguchi, T., Ohki-Hamazaki, H., Juni, A., Ueda, R., and Saigo, K. (2004). Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference. Nucleic Acids Res. 32, 936-948 https://doi.org/10.1093/nar/gkh247
- van Uden, P., Kenneth, N.S., and Rocha, S. (2008). Regulation of hypoxia-inducible factor-1alpha by NF-kappaB. Biochemistry 412, 477-484 https://doi.org/10.1042/BJ20080476
- Walmsley, S.R., Print, C., Farahi, N., Peyssonnaux, C., Johnson, R.S., Cramer, T., Sobolewski, A., Condliffe, A.M., Cowburn, A.S., Johnson, N., et al. (2005). Hypoxia-induced neutrophil survival is mediated by HIF-1alpha-dependent NF-kappaB activity. J. Exp. Med. 201, 105-115 https://doi.org/10.1084/jem.20040624
- Wang, G.L., and Semenza, G.L. (1993). General involvement of hypoxia-inducible factor 1 in transcriptional response to hypoxia. Proc. Natl. Acad. Sci. USA 90, 4304-4308 https://doi.org/10.1073/pnas.90.9.4304
- Wang, G.L., Jiang, B.H., Rue, E.A., and Semenza, G.L. (1995). Hypoxia-inducible factor 1 is a basic-helix-loop-helix-PAS heterodimer regulated by cellular O2 tension. Proc. Natl. Acad. Sci. USA 92, 5510-5514 https://doi.org/10.1073/pnas.92.12.5510
- Wykoff, C.C., Beasley, N.J., Watson, P.H., Turner, K.J., Pastorek, J., Sibtain, A., Wilson, G.D., Turley, H., Talks, K.L., Maxwell, P.H., et al. (2000). Hypoxia-inducible expression of tumorassociated carbonic anhydrases. Cancer Res. 60, 7075-7083
- Yoo, J.W., Hong, S.W., Kim, S., and Lee, D.K. (2006). Inflammatory cytokine induction by siRNAs is cell type- and transfection reagent-specific. Biochem. Biophys. Res. Commun. 347, 1053-1058 https://doi.org/10.1016/j.bbrc.2006.07.001
- Zamanian-Daryoush, M., Der, S.D., and Williams, B.R. (1999). Cell cycle regulation of the double stranded RNA activated protein kinase, PKR. Oncogene 18, 315-326 https://doi.org/10.1038/sj.onc.1202293
- Zhou, J., Schmid, T., and Brune, B. (2003). Tumor necrosis factoralpha causes accumulation of a ubiquitinated form of hypoxia inducible factor-1alpha through a nuclear factor-kappaBdependent pathway. Mol. Biol. Cell 14, 2216-2225 https://doi.org/10.1091/mbc.E02-09-0598
- Zinkernagel, A.S., Johnson, R.S., and Nizet, V. (2007). Hypoxia inducible factor (HIF). function in innate immunity and infection. J. Mol. Med. 85, 1339-1346 https://doi.org/10.1007/s00109-007-0282-2
Cited by
- C. elegans SWAN-1 Binds to EGL-9 and Regulates HIF-1-Mediated Resistance to the Bacterial Pathogen Pseudomonas aeruginosa PAO1 vol.6, pp.8, 2009, https://doi.org/10.1371/journal.ppat.1001075
- Selection and optimization of asymmetric siRNA targeting the human c-MET gene vol.32, pp.6, 2009, https://doi.org/10.1007/s10059-011-0160-1
- Chromatin Dynamics of Gene Activation and Repression in Response to Interferon α (IFNα) Reveal New Roles for Phosphorylated and Unphosphorylated Forms of the Transcription Factor STAT2 vol.286, pp.23, 2011, https://doi.org/10.1074/jbc.m111.231068
- The expression of hypoxia-inducible factor-1 in primary brain tumors vol.123, pp.9, 2009, https://doi.org/10.3109/00207454.2013.789874
- The Hypoxia-Inducible Transcription Factor ZNF395 Is Controlled by IĸB Kinase-Signaling and Activates Genes Involved in the Innate Immune Response and Cancer vol.8, pp.9, 2009, https://doi.org/10.1371/journal.pone.0074911
- Hypoxia-Sensitive Materials for Biomedical Applications vol.44, pp.6, 2009, https://doi.org/10.1007/s10439-016-1578-6
- Carbon ion radiotherapy boost in the treatment of glioblastoma: a randomized phase I/III clinical trial vol.39, pp.None, 2009, https://doi.org/10.1186/s40880-019-0351-2
- Immunostimulant Bathing Influences the Expression of Immune- and Metabolic-Related Genes in Atlantic Salmon Alevins vol.10, pp.10, 2009, https://doi.org/10.3390/biology10100980