Journal of Microbiology and Biotechnology

  • 제18권8호
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  • Pages.1377-1385
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  • 2008
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  • 1017-7825(pISSN)
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  • 1738-8872(eISSN)
한국미생물·생명공학회 (The Korean Society for Microbiology and Biotechnology)
권호 표지

Sensing Domain and Extension Rate of a Family B-Type DNA Polymerase Determine the Stalling at a Deaminated Base

  • Kim, Yun-Jae (Korea Ocean Research and Development Institute) ;
  • Cha, Sun-Shin (Korea Ocean Research and Development Institute) ;
  • Lee, Hyun-Sook (Korea Ocean Research and Development Institute) ;
  • Ryu, Yong-Gu (Korea Ocean Research and Development Institute) ;
  • Bae, Seung-Seob (Korea Ocean Research and Development Institute) ;
  • Cho, Yo-Na (Korea Ocean Research and Development Institute) ;
  • Cho, Hyun-Soo (Department of Biology, College of Science, Yonsei University) ;
  • Kim, Sang-Jin (Korea Ocean Research and Development Institute) ;
  • Kwon, Suk-Tae (Department of Genetic Engineering, Sungkyunkwan University) ;
  • Lee, Jung-Hyun (Korea Ocean Research and Development Institute) ;
  • Kang, Sung-Gyun (Korea Ocean Research and Development Institute)
  • 발행 : 2008.08.31
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초록

The uracil-sensing domain in archaeal family B-type DNA polymerases recognizes pro-mutagenic uracils in the DNA template, leading to stalling of DNA polymerases. Here, we describe our new findings regarding the molecular, mechanism underpinning the stalling of polymerases. We observed that two successive deaminated bases were required to stall TNA1 and KOD1 DNA polymerases, whereas a single deaminated base was enough for stalling Pfu DNA polymerase, in spite of the virtually identical uracil-sensing domains. TNA1 and KOD1 DNA polymerases have a much higher extension rate than Pfu DNA polymerase; decreasing the extension rate resulted in stalling by TNA1 and KOD1 DNA polymerases at a single deaminated base. These results strongly suggest that these polymerases require two factors to stop DNA polymerization at a single deaminated base: the presence of the uracil-sensing domain and a relatively slow extension rate.

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참고문헌

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