CoMFA Analysis on Inhibitory Effect of $3{\beta}$-Hydroxy-12-oleanen-28-oic Acid Analogues on PTP-1B Activity and Prediction of Active Compounds

$3{\beta}$-Hydroxy-12-oleanen-28-oic Acid 유도체들의 PTP-1B 저해활성에 대한 CoMFA 분석과 활성 분자들의 예측

  • Kim, Sang-Jin (Department of Cosmetic Science, Daejeon Health Sciences College) ;
  • Kim, Se-Gon (Division of Applied Biology and Chemistry, College of Agriculture and Life Science, Chungnam National University) ;
  • Sung, Nack-Do (Division of Applied Biology and Chemistry, College of Agriculture and Life Science, Chungnam National University)
  • 김상진 (대전보건대학 화장품과학과) ;
  • 김세곤 (충남대학교 농업생명과학대학 응용생물화학부) ;
  • 성낙도 (충남대학교 농업생명과학대학 응용생물화학부)
  • Published : 2008.06.30

Abstract

The comparative molecular field analyses(CoMFA) models between the substituents with changing groups($R_1{\sim}R_4$) of $3{\beta}$-hydroxy-12-oleanen-28-oic acid derivatives as substrate molecule and their inhibitory activities($pI_{50}$) against protein tyrosine phosphatase(PTP)-1B were derived and discussed quantitatively. The optimized CoMFA F1 model have best predictability and fitness($r^2_{cv.}=0.654$ and $r^2_{ncv.}=0.995$). The order of contribution ratio (%) with CoMFA fields on the inhibitory activities was a steric field(53.0%), electrostatic field(36.2%) and hydrophobic field(10.8%). From the analytical results of CoMFA contour maps, the inhibitory activities were dependent on the R4 group in substrate molecules. Particularly, the new active compounds(P1 & P2) with the inhibitory activity against melanin synthesis were expected.

기질 화합물로써 $3{\beta}$-hydroxy-12-oleanen-28-oic acid 유도체들의 치환기($R_1{\sim}R_4$)가 변화함에 따른 protein tyrosine phosphatase(PTP)-1B의 저해활성에 관한 비교 분자장 분석(CoMFA) 모델을 유도하고 정량적으로 검토하였다. 최적의 CoMFA F1 모델은 가장 높은 예측성과 상관성($r^2_{cv.}=0.654$$r^2_{ncv.}=0.995$)을 나타내었다. 저해활성에 관한 CoMFA장 기여비율(%)의 순서는 입체장(53.0%), 정전기장(36.2%) 및 소수성장(10.8%) 이었다. 등고도 분석 결과로부터 저해활성은 기질 분자 내 $R_4$-치환기에 의존적이었으며 특히 melanin 저해활성이 높은 새로운 화합물(P1 및 P2)이 예측되었다.

Keywords

References

  1. O. Ukkola and M. Santanielmi, Protein tyrosine phosphatase 1B: a new target for the treatment of obesity and associated co-morbidities, J. Intern. Med., 251, 467 (2002) https://doi.org/10.1046/j.1365-2796.2002.00992.x
  2. L. Wu and Z. Y. Zhan, Probing the function of the Asp128 in the lowe molecular weight protein tyrosine phosphatase catalyzed reaction A presteady state and steady state kinetic investigation, Biochemistry, 35, 5426 (1996) https://doi.org/10.1021/bi952885a
  3. H. S. Raper, The anaerobic oxidases, Physiol. Rev., 8, 245 (1928) https://doi.org/10.1152/physrev.1928.8.2.245
  4. D. Lu, Agouti protein is an antagonist of the melanocyte stimulating hormone receptor, Nature, 371, 799 (1994) https://doi.org/10.1038/371799a0
  5. G. Prota and R. H. Thompson, Melanin pigmentation in mammals, Endeavor., 35, 2 (1976) https://doi.org/10.1016/0160-9327(76)90054-5
  6. S. W. Jung, D. S. Han, S. J. Kim, and M. J. Chun, Fementation of tyrosinase inhbitor in mushroom media, Kor. J. Appl. Microbiol. Biotechnol., 24, 227 (1996)
  7. A. B. Lerner and T. B. Fitzpatrick, Biochemistry of melanin formation, Physiol. Rev., 30, 19 (1950)
  8. Y. Ishihara, M. Oka, M. Tsunakawa, K. Tomota, M. Hatori, H. Yamamoto, H. Kamei, T. Miyaki, M. Konish, and T. Oki, Melanostatin, a new melanin synthesis inhibitor production, isolation, chemical properties, structure and biological activity, J. Antibiot., 44, 25 (1991) https://doi.org/10.7164/antibiotics.44.25
  9. S. Takamatsu, M. C. Rho, M. Hayashi, K. Komiyama, H. Tanaka, and S. Omura, New inhibitiors of melanogenesis, OH-3984 K1 and K2, II, physico-chemical properties and structural elucidation, J. Antibiot., 46, 1526 (1993) https://doi.org/10.7164/antibiotics.46.1526
  10. S. H. Lee, S. Y. Kim, J. J. Km, T. S. Jang, and S. R. Chung, The isolation of the inhbitory constituents on melanin polymer formation from the leaves of Cercis chinensis, Kor. J. Pharmacogn., 30(4), 397 (1999)
  11. S. Akiu, Y. Suzuki, T. Asahara, Y. Fujinuma, and M. Fukuda, Inhibitory effect of arbutin on melanogenesis, Jpn. J. Dermatol., 101, 609 (1991)
  12. J. S. Chen, C. Wei, and M. R. Marshall, Inhibition mechanism of kojic acid on polyphenol oxidase, J. Agric. Food Chem., 39, 1897 (1991) https://doi.org/10.1021/jf00011a001
  13. K. N. Tomita, N. Oda, M. Kamel, T. Miyaki, and T. Oki, A new screening method for melanin biosynthesis inhibitors using Streptomyces bikiniensis, J. Antibiotics, 12, 1601 (1990)
  14. L. Hu, J. Li, D. Hong, and Q. Ye, Triterpenes type protein tyrosine phosphatase 1B inhibitors and the preparation method and the use, China Patent, WO 2006/0609499 A1 (2006)
  15. M. Akamatsu, Current state and perspectivies of 3D-QSAR, Curr. Topics Med. Chem., 2, 1381 (2002) https://doi.org/10.2174/1568026023392887
  16. R. D. III. Cramer, D. E. Patterson, and J. E. Bunce, Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins, J. Am. Chem. Soc., 110, 5959 (1988) https://doi.org/10.1021/ja00226a005
  17. H. Lihong, Drug discovery based on traditional Chinese medicine, Proceedings of international symposium on development of Chinese cosmetic technology, Soc. Cosmet. Scientists Korea, 31, 3 (2005)
  18. R. Kerr, Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics, Biophys. J., 67, 1501 (1994) https://doi.org/10.1016/S0006-3495(94)80624-1
  19. N. D. Sung, T. Y. Yoon, J. H. Song, and H. S. Jung, Three dimensional quantitative structure-activity relationship on the fungicidal activites of new novel 2-alkoxyphenyl-3-phenylthioisoidoline-1-one derivative using the comparative molecular field analyses (CoMFA) methodology based on the different alignment approach, Korean Soc. Appl. Bio. Chem., 48, 82 (2005)
  20. R. D. Cramer, J. D. Bunce, and D. E. Patterson, Cross-validation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR studies, Quant. Struct. Act. Relat., 7, 18 (1988) https://doi.org/10.1002/qsar.19880070105
  21. G. E. Kellogg, S. F. Semus, and D. J. Abraham, HINT: A new method of empirical hydrophobic field calculation for CoMFA, J. Comput. Aid. Mol. Des., 5, 545 (1991) https://doi.org/10.1007/BF00135313
  22. C. K. Kim, K. A. Lee, H. Zhang, H. Cho, and B. S. Lee, Docking studies on formylchromone derivatives as protein tyrosine phosphatase 1B (PTP-1B) inhibitors, Bull. Korean Chem. Soc., 28, 1141 (2007) https://doi.org/10.5012/bkcs.2007.28.7.1141