Acknowledgement
Grant : Construction of the DNA barcode system for the conservation and management of Korean insect fauna
References
- Blackman, R.L., and Eastop, V.F. (2000). Aphids on the World's Crops: An Identification and Information Guide, 2nd eds (Chichester, John Wiley & Sons Ltd.)
- Brower, A.V.Z. (2006). Problems with DNA barcodes for species delimitation: 'ten species' of Astraptes fulgerator reassessed (Lepidoptera: Hesperiidae). Systematics and Biodiversity 4, 127-132 https://doi.org/10.1017/S147720000500191X
- Bull, N.J., Schwarz, M.P., and Cooper, S.J.B. (2003). Phylogenetic divergence of the Australian allodapine bees (Hymenoptera : Apidae). Mol. Phylogenet. Evol. 27, 212-222 https://doi.org/10.1016/S1055-7903(02)00402-5
- Bulman, S.R., Stufkens, M.A.W., Eastop, V.F., and Teulon, D.A.J. (2005). Rhopalosiphum aphids in New Zealand. II. DNA sequences reveal two incompletely described species. NZ J. Zool. 32, 37-45 https://doi.org/10.1080/03014223.2005.9518396
- Castresana, J. (2002). GBLOCLKS: selection of conserved blocks from multiple alignments for their use in phylogenetic analysis (Copyrighted by J. Castresana, EMBL)
- Cho, S.W., Mitchell, A., Regier, J.C., Mitter, C., Poole, R.W., Friedlander, T.P., and Zhao, S.W. (1995). A highly conserved nuclear gene for low-level phylogenetics: elongation factor-1-alpha recovers morphology-based tree for heliothine moths. Mol. Biol. Evol. 12, 650-656
- Crozier, R.H., Dobric, N., Imai, H.T., Graur, D., Cornuet, J.M., and Taylor, R.W. (1995). Mitochondrial-DNA sequence evidence on the phylogeny of Australian jack-jumper ants of the Myrmecia pilosula complex. Mol. Phylogenet. Evol. 4, 20-30 https://doi.org/10.1006/mpev.1995.1003
- Damgaard, J., and Sperling, F.A.H. (2001). Phylogeny of the water strider genus Gerris Fabricius (Heteroptera: Gerridae) based on COI mtDNA, EF-1 nuclear DNA and morphology. Systematic Entomology 26, 241-254 https://doi.org/10.1046/j.1365-3113.2001.00141.x
- Djernaes, M., and Damgaard, J. (2006). Exon-intron structure, paralogy and sequenced regions of elongation factor-1 alpha in Hexapoda. Arthropod Systematics & Phylogeny 64, 45-52
- Farris, J.S., Kallersjo, M., Kluge, A.G., and Bult, C. (1994). Testing significance of incongruence. Cladistics-the International Journal of the Willi Hennig Society 10, 315-319 https://doi.org/10.1111/j.1096-0031.1994.tb00181.x
- Folmer, O., Black, M., Hoeh, W., Lutz, R., and Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3, 294-299
- Friedlander, T.P., Regier, J.C., and Mitter, C. (1992). Nuclear gene-sequences for higher level phylogenetic analysis - 14 promising candidates. Systematic Biology 41, 483-490 https://doi.org/10.1093/sysbio/41.4.483
- Friedlander, T.P., Regier, J.C., and Mitter, C. (1994). Phylogenetic information content of five nuclear gene sequences in animals: Initial assessment of character sets from concordance and divergence studies. Systematic Biology 43, 511-525 https://doi.org/10.1093/sysbio/43.4.511
- Friedlander, T.P., Regier, J.C., and Mitter, C. (1997). Initial assessment of character sets from five nuclear gene sequences in animals. In Biodiversity II, M.L. Reaka-Kudla, D.E. Wilson, and E.O. Wilson, eds. (Washington, D.C., USA: Joseph Henry Press), pp. 301-320
- Han, H.Y., and Ro, K.E. (2005). Molecular phylogeny of the superfamily Tephritoidea (Insecta: Diptera): new evidence from the mitochondrial 12S, 16S, and COII genes. Mol. Phylogenet. Evol. 34, 416-430 https://doi.org/10.1016/j.ympev.2004.10.017
- Harry, M., Solignac, M., and Lachaise, D. (1998). Molecular evidence for parallel evolution of adaptive syndromes in figbreeding Lissocephala (Drosophilidae). Mol. Phylogenet. Evol. 9, 542-551 https://doi.org/10.1006/mpev.1998.0508
- Hebert, P.D.N., Cywinska, A., Ball, S.L., and DeWaard, J.R. (2003). Biological identifications through DNA barcodes. Proc. R. Soc. Lond. B. Biol. Sci. 270, 313-321
- Hebert, P.D.N., Penton, E.H., Burns, J.M., Janzen, D.H., and Hallwachs, W. (2004). Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc. Natl. Acad. Sci. USA 101, 14812-14817
- Hebert, P.D.N., Ratnasingham, S., and deWaard, J.R. (2003). Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. R. Soc. Lond. B. Biol. Sci. 270, S96-S99
- Heie, O.E. (1994). The Aphidoidea (Hemiptera) of Fennoscandia and Denmark. V. Family Aphididae. Part 2 of tribe Macrosiphini of subfamily Aphidinae. (Klampenborg, Scandinavian Science Press Ltd.)
- Heie, O.E. (1995). The Aphidoidea (Hemiptera) of Fennoscandia and Denmark. VI. Family Aphididae. Part 3 of tribe Macrosiphini of subfamily Aphidinae, and family Lachninae. (Klampenborg, Scandinavian Science Press Ltd.)
- Hille Ris Lambers, D. (1965). On some Japanses Aphididae (Homoptera). Tijdschrft voor enomologie, Dell 108, AFL 7, 189-203
- Hillis, D.M., and Dixon, M.T. (1991). Ribosomal DNA - molecular evolution and phylogenetic inference. Q. Rev. Biol. 66, 411-453 https://doi.org/10.1086/417338
- Hoy, M.A. (1994). Chapter13. Insect molecular systematics and evolution. In Insect Molecular Genetics (San Diego, USA: Academic Press Inc.), pp. 337-379
- Jermiin, L.S., and Crozier, R.H. (1994). The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger: sequence divergence in Hymenoptera may be associated with nucleotide content. J. Mol. Evol. 38, 282-294
- Ji, Y.J., Zhang, D.X., and He, L.J. (2003). Evolutionary conservation and versatility of a new set of primers for amplifying the ribosomal internal transcribed spacer regions in insects and other invertebrates. Mol. Ecol. Notes 3, 581-585 https://doi.org/10.1046/j.1471-8286.2003.00519.x
- Jousselin, E., van Noort, S., and Greeff, J.M. (2004). Labile male morphology and intraspecific male polymorphism in the Philotrypesis fig wasps. Mol. Phylogenet. Evol. 33, 706-718 https://doi.org/10.1016/j.ympev.2004.08.008
- Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120 https://doi.org/10.1007/BF01731581
- Kumar, S., Tamura, K., and Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5, 150-163 https://doi.org/10.1093/bib/5.2.150
- Lee, S., Holman, J., and Havelka, J. (2002). Taxonomic revision of the genus Megoura Buckton (Hemiptera: Aphididae) from the Korean Peninsula with the description of a new species and a key to the world species. Proceedings of the Entomological Society of Washington 104, 447-457
- Mezghani, M., Makni, H., Pasteur, N., Navajas, M., and Marrakchi, M. (2002). Species distinction and population structure in Mayetiola species (Diptera: cecidomyiidae) based on nuclear and mitochondrial sequences. International Journal of Dipterological Research 13, 93-107
- Miyazaki, M. (1971). A revision of the tribe Macrosiphini of Japan (Homoptera: Aphididae: Aphidinae). Insecta Matsumurana 34, 1-247
- Moran, N.A., Kaplan, M.E., Gelsey, M.J., Murphy, T.G., and Scholes, E.A. (1999). Phylogenetics and evolution of the aphid genus Uroleucon based on mitochondrial and nuclear DNA sequences. Systematic Entomology 24, 85-93 https://doi.org/10.1046/j.1365-3113.1999.00076.x
- Nazari, V., Zakharov, E.V., and Sperling, F.A.H. (2007). Phylogeny, historical biogeography, and taxonomic ranking of Parnassiinae (Lepidoptera, Papilionidae) based on morphology and seven genes. Mol. Phylogenet. Evol. 42, 131-156 https://doi.org/10.1016/j.ympev.2006.06.022
- Nei, M. (1991). Relative efficiencies of different tree-making methods for molecular data. In Phylogenetic Analysis of DNA sequences. M.M. Miyamoto, and J. Cracraft, eds. (New York, USA: Oxford Univ. Press), pp. 90-128
- Nei, M. (1996). Phylogenetic analysis in molecular evolutionary genetics. Annu. Rev. Genet. 30, 371-403 https://doi.org/10.1146/annurev.genet.30.1.371
- Normark, B.B. (1996). Phylogeny and evolution of parthenogenetic weevils of the Aramigus tessellatus species complex (Coleoptera: Curculionidae: Naupactini): Evidence from mitochondrial DNA sequences. Evolution 50, 734-745 https://doi.org/10.2307/2410846
- Normark, B.B. (1999). Evolution in a putatively ancient asexual aphid lineage: Recombination and rapid karyotype change. Evolution 53, 1458-1469 https://doi.org/10.2307/2640892
- Normark, B.B. (2000). Molecular systematics and evolution of the aphid family Lachnidae. Mol. Phylogenet. Evol. 14, 131-140 https://doi.org/10.1006/mpev.1999.0699
- Ortiz-Rivas, B., Moya, A., and Martinez-Torres, D. (2004). Molecular systematics of aphids (Homoptera: Aphididae): new insights from the long-wavelength opsin gene. Mol. Phylogenet. Evol. 30, 24-37 https://doi.org/10.1016/S1055-7903(03)00155-6
- Palumbi, S.R. (1996). Nucleic acids II: The polymerase chain reaction. In Molecular Systematics. D.M. Hillis, ed. (Sunderland, UK: Sinauer Press), pp. 205-247
- Park, M.H., Sim, C.J., Baek, J., and Min, G.S. (2007). Identification of genes suitable for DNA barcoding of morphologically indistinguishable Korean Halichondriidae sponges. Mol. Cells 23, 220-227
- Raboudi, F., Mezghani, M., Makni, H., Marrakchi, M., Rouault, J.D., and Makni, M. (2005). Aphid species identification using cuticular hydrocarbons and cytochrome b gene sequences. Journal of Applied Entomology 129, 75-80 https://doi.org/10.1111/j.1439-0418.2005.00934.x
- Reed, R.D., and Sperling, F.A.H. (1999). Interaction of process partitions in phylogenetic analysis: an example from the swallowtail butterfly genus Papilio. Mol. Biol. Evol. 16, 286-297 https://doi.org/10.1093/oxfordjournals.molbev.a026110
- Remaudiere, G., and Remaudiere, M. (1997). Catalogue des Aphididae du Monde. Homoptera Aphidoidea; Catalogue of the world's Aphididae (Paris, INRA)
- Ronquist, F., and Huelsenbeck, J.P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574 https://doi.org/10.1093/bioinformatics/btg180
- Simmons, R.B., and Weller, S.J. (2001). Utility and evolution of cytochrome b in insects. Mol. Phylogenet. Evol. 20, 196-210 https://doi.org/10.1006/mpev.2001.0958
- Simon, C., Franke, A., and Martin A. (1991). The polymerase chain reaction: DNA extraction and amplication. In Molecular Techniques in Taxonomy, G.M., H. ed. (Berlin, Germany: Springer), p. 410
- Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H., and Flook, P. (1994). Evolution, weighting, and phylogenetic utility of mitochondrial gene-sequences and a compilation of conserved polymerase chain-reaction primers. Ann. Entomol. Soc. Am. 87, 651-701 https://doi.org/10.1093/aesa/87.6.651
- Stern, D.L. (1994). A Phylogenetic analysis of soldier evolution in the aphid family hormaphididae. Proc. R. Soc. Lond. B. Biol. Sci. 256, 203-209
- Stern, D.L. (1998). Phylogeny of the tribe Cerataphidini (Homoptera) and the evolution of the horned soldier aphids. Evolution 52, 155-165 https://doi.org/10.2307/2410930
- Stern, D.L., Aoki, S., and Kurosu, U. (1997). Determining aphid taxonomic affinities and life cycles with molecular data: a case study of the tribe Cerataphidini (Hormaphididae: Aphidoidea: Hemiptera). Systematic Entomology 22, 81-96 https://doi.org/10.1046/j.1365-3113.1997.d01-20.x
- Swofford, D.L. (1998). PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods) (Sunderland, MA, Sinauer Associates)
- Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24, 4876-4882
- von Dohlen, C.D., and Moran, N.A. (2000). Molecular data support a rapid radiation of aphids in the Cretaceous and multiple origins of host alternation. Biol. J. Linn. Soc. 71, 689-717 https://doi.org/10.1111/j.1095-8312.2000.tb01286.x
- von Dohlen, C.D., and Teulon, D.A.J. (2003). Phylogeny and historical biogeography of New Zealand indigenous aphidini aphids (Hemiptera, Aphididae): An hypothesis. Ann. Entomol. Soc. Am. 96, 107-116 https://doi.org/10.1603/0013-8746(2003)096[0107:PAHBON]2.0.CO;2
- von Dohlen, C.D., Kurosu, U., and Aoki, S. (2002). Phylogenetics and evolution of the eastern Asian-eastern North American disjunct aphid tribe, Hormaphidini (Hemiptera : Aphididae). Mol. Phylogenet. Evol. 23, 257-267 https://doi.org/10.1016/S1055-7903(02)00025-8
- von Dohlen, C.D., Rowe, C.A., and Heie, O.E. (2006). A test of morphological hypotheses for tribal and subtribal relationships of Aphidinae (Insecta : Hemiptera : Aphididae) using DNA sequences. Mol. Phylogenet. Evol. 38, 316-329 https://doi.org/10.1016/j.ympev.2005.04.035
- Yoo, H.S., Eah, J.Y., Kim, J.S., Kim, Y.J., Min, M.S., Paek, W.K., Lee, H., and Kim, C.B. (2006). DNA barcoding Korean birds. Mol. Cells 22, 323-327
- Zhang, D.X., and Hewitt, G.M. (1997). Assessment of the universality and utility of a set of conserved mitochondrial COI primers in insects. Insect Mol. Biol. 6, 143-150 https://doi.org/10.1111/j.1365-2583.1997.tb00082.x