Evolutionary Relationship of Liobagrus mediadiposalis (Teleostei: Amblycipitidae) Populations in Korea Inferred from Cytochrome b DNA Sequences

한국 고유종인 자가사리(Liobagrus mediadiposalis) 지역개체군의 분자진화적 유연관계

  • Kim, Maeng Jin (Faculty of Applied Marine Sciences, Cheju National University) ;
  • Han, Song-Hun (Faculty of Applied Marine Sciences, Cheju National University) ;
  • Yang, Hye-Young (Faculty of Applied Marine Sciences, Cheju National University) ;
  • Jo, Mi-Ran (Faculty of Applied Marine Sciences, Cheju National University) ;
  • Chung, Sang-Chul (Faculty of Applied Marine Sciences, Cheju National University) ;
  • Song, Choon Bok (Faculty of Applied Marine Sciences, Cheju National University)
  • Received : 2006.11.14
  • Accepted : 2006.11.28
  • Published : 2006.12.31

Abstract

Phylogenetic relationships and DNA polymorphism among local populations of the Korean native catfish species, Liobagrus mediadiposalis, have been investigated based on mitochondrial cytochrome b DNA sequences. As a result, three genetically distinct groups of local populations were recognized based on the phylogenetic tree constructed. The first group was called "Nakdong-river group" that included the local populations from Geumho-river, Gyeongho-river, and Deokcheon-river; the second one was "Geum-river group"; the third one was represented as "Seomjin-river group" that included the samples from Seomjin-river, Dongjin-river and Geokum-do. The phylogeny also implied that the ancestral group of L. mediadiposalis have first evolved to Nakdong-river group, and later two local populations (Geum-river and Seomjinriver group) were diverged from the other lineage. DNA polymorphisms we observed were 4.4~4.7% between Geum-river group and Seomjin-river group, 5.1~5.5% between Seomjinriver group and Nakdong-river group, and 5.5~5.7% between Nakdong-river group and Geumriver group. These results indicated the long period of geographic isolation due to the river system in Korea caused such high degrees of DNA polymorphisms between local populations of L. mediadiposalis.

자가사리 지역개체군의 분자계통 진화적 유연관계를 알아보기 위하여 미토콘드리아 cytochrome b 유전자 서열을 이용하여 분석하였다. 그 결과, 우리나라 자가사리 개체군은 크게 3개의 집단으로 구분되었다. 즉 조상형 자가사리 개체군에서 먼저 낙동강 집단(금호강, 덕천강, 경호강 개체군)이 분화되었으며 그 후 섬진강 집단(동진강, 섬진강, 영산강, 거금도 개체군)과 금강 집단으로 분화되었을 것으로 추정할 수 있었다. 그리고 자가사리 개체군 집단 사이의 염기서열 차이는 금강집단과 섬진강집단 사이의 50~53 bp (4.4~4.7%)에 비해서 금강 집단과 낙동강 집단 사이의 차이는 63~65 bp (5.5~5.7%), 그리고 낙동강 집단과 섬진강 집단 사이에서 58~63 bp (5.1~5.5%)를 나타내어서 금강 집단과 낙동강 집단 사이에서 가장 유전적인 차이가 높은 것으로 나타났다. 이러한 개체군 집단의 분화양상과 유전적인 다형은 수계 형성과 같은 지리적 변화 때문에 생기는 오랫동안의 유전적 격리에 의한 것으로 분화시기 추정결과 이들 개체군 집단들의 격리 시기는 적어도 빙하기 이전으로 거슬러 올라가는 것으로 생각된다.

Keywords

References

  1. Cantatore, P., M. Roberi, G. Pesole, A. Ludovico, F. Milella, M.N. Gadaleta and C. Saccone. 1994. Evolutionary analysis of cytochrome b sequences in some Perciformes: evidence for a slower rate of evolution than mammals. J. Mol. Evol., 39 : 589-597 https://doi.org/10.1007/BF00160404
  2. Choi, K.C. 1973. On the geographical distribution of fresh water fishes south of DMZ in Korea. Korean J. Lim., 6 : 29-36
  3. Esposti, M.D., S.D. Vries, M. Crimi, A. Ghelli, T. Oatarnello and A. Meyer. 1993. Mitochondrial cytochrome b: evolution and structure of the protein. Biochim. Biophys. Acta., 1143 : 243-271 https://doi.org/10.1016/0005-2728(93)90197-N
  4. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39(4) : 783- 791 https://doi.org/10.2307/2408678
  5. Fitch, W.M. 1971. Toward defining the course of evolution: minimum change for a specific tree topolgy. Syst. Zool., 20 : 406-416 https://doi.org/10.2307/2412116
  6. Jeon, S.R. 1986. Studies on the key and distribution of serranid peripheral fresh-water fishes from Korea. Ph.D. Thesis SMWU, 18 : 335-355
  7. Jeon, S.R. 1983. Studies on the distribution and key of Cobitididae fishes (Cypriniformes) from Korea. Coll. Thesis SMWU, 11 : 289-321
  8. Jeon, S.R. 1980. Studies on the distribution of fresh-water fishes from Korea. Ph.D. Thesis, Choong-Ang Univ., 85pp
  9. Johns, G.C. and J.C. Avise. 1998. A comparative summary of genetic distances in the vertebrate from the mitochondrial cytochrome b gene. Mol. Biol. Evo., 15(11) : 1481-1490
  10. Kim, I.S., C. Youn, C.L. Lee, Y.J. Lee. B.J. Kim and J.H. Kim. 2005. Illustrated book of Korean fishes. Kyo-Hak publishing Co., Ltd., pp. 417-418
  11. Kim, M.J. 2004. Origin and Biogeography of the Korean perch (Coreoperca herzi) and its relatives based on phylogenetic approach with cytochrome b DNA sequences. M.S. Thesis, Cheju Natl. Univ., 39pp
  12. Kocher, T.D. and C.A. Stepien. 1997. Molecular systematics of fishes. Academic Press New York, 314pp
  13. Koh, B.S. and C.B. Song. 2004. Molecular phylogeny of Syngnathiformes fishes inferred from mitochondrial cytochrome b sequences. J. Kor. Fish. Soc., 37(5) : 405 -413
  14. Kumar, S., K. Tamura and M. Nei. 2004. Integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5(2) : 150-163 https://doi.org/10.1093/bib/5.2.150
  15. Lindberg, G. 1972. 現世淡水魚類の起源. 東海大學出版社, 336pp
  16. Masaru, M., T. Yamagishi, M. Sakaizumi and S.R. Joen. 1997. Mitochondrial DNA variation in the Korean wild population of medaka, Oryzias latipes. Korean J. Limn., 2 : 119-128
  17. Meyer, A. 1993. Evolution of mitochondrial DNA in fishes. pp. 1-38. In Molecular biology frontiers, biochemistry and molecular biology of fishes. Vol. 2. Hochachka, P.W. and T.P. Mommsen eds. Elsevier Sci. Pub. AM, 470pp
  18. Min, M.S. and S.Y. Yang. 1986. Classification, distribution and geographic variation of tow species of the genus Moroco in Korea. Korean J. Syst. Zool., 2 : 63-78
  19. Mori, T. 1936. Studies on the geographical distribution of fresh water fishes in Korea. Bull. Biogeogr. Soc. Japan, 6 : 35-61
  20. Nei, M. and S. Kumar. 2000. Molecular evolution and phylogenetics. Oxford University Press. New York, 333pp
  21. Nelson, J.S. 1994. Fishes of the world (3rd ed). John Wiley & Sons, New York, 600pp
  22. Orti, G., M.A. Bell, T.E. Reimchen and A. Meyer. 1994. Global survey of mitochondrial DNA sequences in the threespine stickleback: evidence for recent migrations. Evolution, 48 : 608-622 https://doi.org/10.2307/2410473
  23. Perdices, A., C. Cunha and M.M. Coelho. 2004. Phylogenetic of Zacco platypus (Teleostei, Cyprinidae) populations on the upper and middle Chang Jiang (=Yangtze) drainage inferred from cytochrome b sequences. Mol. Phylo. Evol., 31 : 192-203 https://doi.org/10.1016/j.ympev.2003.07.001
  24. Posada, D. and K.A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics, 14(9) : 817 -818 https://doi.org/10.1093/bioinformatics/14.9.817
  25. Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4(4) : 406-425
  26. Son, Y.M. 1995. On the piscigeography of the freshwater of islands in Korea. Proceeding of '95 ichthyofauna and characteristics of freshwater ecosystem in Korea. pp. 51 -62. (in Korean)
  27. Son, Y.M. 1987. Systematic studies on the torrent catfish, family Amblycipitidae (Pisces: Siluriformes) from Korea. Ph.D. Thesis, Choong-Ang Univ., 81pp
  28. Son, Y.M. and H.B. Song. 1998. Freshwater fish fauna and distribution in Kojedo, Korea. Korean J. Ichthyol., 10(1) : 87-97
  29. Son, Y.M. and I.Y. Choo. 1988. Ecological studies of catfish, genus Liobagrus from Korea. Korean Journal of Limnology, 21(4) : 243-251
  30. Son, Y.M. and J.H. Lee. 1989. Karyotypes of genus Liobagrus (Pisces: Amblycipitidae) in Korea. Korean J. Ichthyol., 1(1, 2) : 64-72
  31. Song, C.B., T.N. Near and L.M. Page. 1998. Phylogenetic relations among percid fishes as inferred from mitochondrial cytochrome b DNA sequence data. Mol. Phylo. Evol., 10(3) : 343-353 https://doi.org/10.1006/mpev.1998.0542
  32. Sota, T., M. Takahiko, S. Toshihiko, S. Hitoshi and Y. Kenichiro. 2005. Genetic differentiation of the Gobies Gymnogobius castaneus and G. taranetizi in the region surrounding the sea of Japan as inferred from a mitochondrial gene genealogy. Zoological Science, 22 : 87- 93 https://doi.org/10.2108/zsj.22.87
  33. Swofford, D.L. 1998. PAUP: phylogenetic analysis using parsimony, version 4.0b8, Sinauer Associates, Sunderland, MA
  34. Toshio, O., S.R. Jeon and T. Kobayashi. 1993. Genetic variation and population structure in Korean piscivorous chub, Opsariichthys bidens from Korea. Korean J. Basic. Sci., 7 : 1-10
  35. Yang, S.Y. and Y.M. Son. 1986. Genetic and Morphological Variation of the Genus Liobagrus in Korea. Korean J. Syst. Zool., 2(2) : 1-12
  36. Zhao, Y., J. Lan and C. Zhang. 2004. A new species of amblycipitid catfish, Xiurenbagrus gigas (Teleostei: Siluriformes), from Guangxi, China. Ichthyol. Res., 51(3) : 228-232