References
- Altschul, S.F., W. Gish, W. Miller, E.W Myers, and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 https://doi.org/10.1016/S0022-2836(05)80360-2
- Amann, R., W. Ludwig, and K.H. Schleifer. 1994. Identification of uncultured bacteria: a challenging task for molecular taxonomists. ASM News 60, 360-365
- Cannone, J.J. S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, Y. Du, B. Feng, N. Lin, L.V. Madabusi, K.M. Muller, N. Pande, Z. Shang, N. Yu, and R.R. Gutell. 2003. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 2002. 3, 2-31 https://doi.org/10.1186/1471-2105-3-2
- DeLong, E.F., G.S. Wickham, and N.R. Pace. 1989. Phylogenetic stains: ribosomal RNA-based probes for the identification of single sells. Science 243, 1360-1363 https://doi.org/10.1126/science.2466341
- Hwang, S., S.J. Kim, C.K. Kim, Y. Kim, S.J. Kim, and Y.C. Kim. 1999. The phnIJ genes encoding acetaldehyde dehydrogenase (acylating) and 4-hydroxy-2-oxovalerate aldolase in Pseudomonas sp. DJ77 and their evolutionary implications. Biochem. Biophys. Res. Commun. 256, 469-473 https://doi.org/10.1006/bbrc.1999.0355
- Kim, C.K., J.W. Kim, Y.C. Kim, and T.L. Mheen. 1986. Isolation of aromatic hydrocarbon-degrading bacteria and genetic characterization of their plasmid genes. Kor. J. Microbiol. 24, 67-72
- Kim, S.J., H.J. Shin, Y. Kim, S.J. Kim, and Y.C. Kim. 1997b. Nucleotide sequence of the Pseudomonas sp. DJ77 phnG gene encoding 2-hydroxymuconic semialdehyde dehydrogenase. Biochem. Biophys. Res. Commun. 240, 41-45 https://doi.org/10.1006/bbrc.1997.7595
- Kim, S.J., J. Chun, K.S. Bae, and Y.C. Kim. 2000. Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov.. Int. J. Syst. Evol. Microbiol. 50, 1641-1647 https://doi.org/10.1099/00207713-50-4-1641
- Liesack, W., and E. Stackebrandt. 1992. Occurence of novel groups of the domain bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174, 5072-5078 https://doi.org/10.1128/jb.174.15.5072-5078.1992
- Maidak, B.L., J.R. Cole, T.G. Lilburn, C.T. Jr. Parker, P.R. Saxman, J.M. Stredwick, G.M. Garrity, B. Li, G.J. Olsen, S. Pramanik, T.M. Schmidt, and J.M. Tiedje. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. 28, 173-174 https://doi.org/10.1093/nar/28.1.173
- Mathews, D.H., M.D. Disney, J.L. Childs, S.J. Schroeder, M. Zuker, and D.H. Turner. 2004. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl. Acad. Sci. USA 101, 7287-7292
- Pace, N.R. 1997. A molecular view of microbial diversity and the biosphere. Science 276, 734-740 https://doi.org/10.1126/science.276.5313.734
- Retief J.D. 2000. Phylogenetic analysis using PHYLIP. Methods Mol. Biol. 132, 243-258
- Takuchi, M., K. Hamana, and A. Hiraishi. 2001. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphinogobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. 51, 1405-1417 https://doi.org/10.1099/00207713-51-4-1405
- Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882 https://doi.org/10.1093/nar/25.24.4876
- Woese, C.R. 1987. Bacterial evolution. Microbiol. Rev. 51, 221-271