1 |
Altschul, S.F., W. Gish, W. Miller, E.W Myers, and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410
DOI
PUBMED
|
2 |
Cannone, J.J. S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, Y. Du, B. Feng, N. Lin, L.V. Madabusi, K.M. Muller, N. Pande, Z. Shang, N. Yu, and R.R. Gutell. 2003. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 2002. 3, 2-31
DOI
PUBMED
|
3 |
Liesack, W., and E. Stackebrandt. 1992. Occurence of novel groups of the domain bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174, 5072-5078
DOI
PUBMED
|
4 |
DeLong, E.F., G.S. Wickham, and N.R. Pace. 1989. Phylogenetic stains: ribosomal RNA-based probes for the identification of single sells. Science 243, 1360-1363
DOI
PUBMED
|
5 |
Kim, S.J., H.J. Shin, Y. Kim, S.J. Kim, and Y.C. Kim. 1997b. Nucleotide sequence of the Pseudomonas sp. DJ77 phnG gene encoding 2-hydroxymuconic semialdehyde dehydrogenase. Biochem. Biophys. Res. Commun. 240, 41-45
DOI
ScienceOn
|
6 |
Takuchi, M., K. Hamana, and A. Hiraishi. 2001. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphinogobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. 51, 1405-1417
DOI
PUBMED
|
7 |
Kim, S.J., J. Chun, K.S. Bae, and Y.C. Kim. 2000. Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov.. Int. J. Syst. Evol. Microbiol. 50, 1641-1647
DOI
PUBMED
ScienceOn
|
8 |
Maidak, B.L., J.R. Cole, T.G. Lilburn, C.T. Jr. Parker, P.R. Saxman, J.M. Stredwick, G.M. Garrity, B. Li, G.J. Olsen, S. Pramanik, T.M. Schmidt, and J.M. Tiedje. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. 28, 173-174
DOI
ScienceOn
|
9 |
Amann, R., W. Ludwig, and K.H. Schleifer. 1994. Identification of uncultured bacteria: a challenging task for molecular taxonomists. ASM News 60, 360-365
|
10 |
Woese, C.R. 1987. Bacterial evolution. Microbiol. Rev. 51, 221-271
PUBMED
|
11 |
Hwang, S., S.J. Kim, C.K. Kim, Y. Kim, S.J. Kim, and Y.C. Kim. 1999. The phnIJ genes encoding acetaldehyde dehydrogenase (acylating) and 4-hydroxy-2-oxovalerate aldolase in Pseudomonas sp. DJ77 and their evolutionary implications. Biochem. Biophys. Res. Commun. 256, 469-473
DOI
ScienceOn
|
12 |
Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882
DOI
ScienceOn
|
13 |
Kim, C.K., J.W. Kim, Y.C. Kim, and T.L. Mheen. 1986. Isolation of aromatic hydrocarbon-degrading bacteria and genetic characterization of their plasmid genes. Kor. J. Microbiol. 24, 67-72
|
14 |
Mathews, D.H., M.D. Disney, J.L. Childs, S.J. Schroeder, M. Zuker, and D.H. Turner. 2004. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl. Acad. Sci. USA 101, 7287-7292
|
15 |
Pace, N.R. 1997. A molecular view of microbial diversity and the biosphere. Science 276, 734-740
DOI
PUBMED
ScienceOn
|
16 |
Retief J.D. 2000. Phylogenetic analysis using PHYLIP. Methods Mol. Biol. 132, 243-258
PUBMED
|