• 한국환경농학회지
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• 제35권2호
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• pp.143-147
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• 2016

BACKGROUND: Rice fields are one of the most important habitats for various bird species. The list of bird species occurred in rice fields in Korean peninsula have been documented. However, information of listed bird species is included not only rice fields but also other wetland habitats such as lakes, tidal flats and rivers. Therefore, the study was conducted to clarify the status of bird observed in rice fields of Korea.METHODS AND RESULTS: Birds using rice fields defined as birds which forage or rest on rice paddies, levees, ditches and farming roads. Birds using rice fields recorded as total 124 species belonging to 40 families. Anatidae and Scolopacidae were the best represented family, followed by Ardeidae, Accipitridae, Motacillidae and Emberizidae; 50% of species belonged to these six families. 18 of 124 endangered wild species, which designated threatened at the national scale, found in this study regions.CONCLUSION: Despite interest in birds using rice fields of Korean peninsula, knowledge of birds and rice fields there is extremely limited. We need more studies to understand and conserve for birds in rice fields of Korea.

• Journal of Plant Biotechnology
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• 제43권3호
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• pp.332-340
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• 2016

Seed size traits are controlled by multiple genes in crops and determine grain yield, quality and appearance. However, the molecular mechanisms controlling the size of plant seeds remain unclear. We performed functional analysis of BrPATL4 encoding Sec14-like protein to determine the genetic architecture of seed size, shape and their association analyses. We used 60 $T_3$ transgenic rice lines to evaluate seed length, seed width and seed height as seed size traits, and the ratios of these values as seed shape traits. Pleiotropic effects on general architecture included small seed size, erect panicles, decreased grain weight, reduced plant height and increased sterility, which are common to other mutants deficient in gibberellic acid (GA) biosynthesis. To test whether BrPATL4 overexpression is deleterious for GA signal transduction, we compared the relative expression of GA related gene and the growth rate of second leaf sheath supplied with exogenous $GA_3$. Overexpression of BrPATL4 did not affect GA biosynthesis or signaling pathway, with the same response shown under GA treatment compared to the wild type. However, the causal genes for the small seed phenotype (D1, SRS1, and SRS5) and the erection of panicles showed significantly decreased levels in mRNA accumulation compared to the wild type. These results suggest that the overexpression of BrPATL4 can control seed size through the suppression of those genes related to seed size regulation. Although the molecular function of BrPATL4 is not clear for small seed and erect panicles of BrPALT4 overexpression line, this study provides some clues about the genetic engineering of rice seed architecture.

• The Plant Pathology Journal
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• 제30권2호
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• pp.208-214
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• 2014

Wild rice, Oryza grandiglumis shows hyper-resistance response to pathogen infection. In order to identify genes necessary for defense response in plants, we have carried out a subtractive hybridization coupled with a cDNA macroarray. An acidic PATHOGENESIS-RELATED1 (PR1) gene of the wild rice is highly identical to the acidic PR1 genes of different plant species. The OgPR1a cDNA has an apparent single open reading frame with a predicted molecular mass 40,621 Da and an isoelectic point of 5.14. Both in silico analysis and a transient expression assay in onion epidermal cells revealed that the OgPR1a protein could be localized in intercellular space in plants. The OgPR1a mRNA was strongly transcribed by the exogenous treatment with ethylene and jasmonic acid as well as protein phosphatase inhibitors. Additionally, ectopic expression of the OgPR1a conferred disease resistance on Arabidopsis to the bacterial and fungal infections.

• Journal of the Korean Institute of Landscape Architecture International Edition
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• 제1호
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• pp.150-158
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• 2001

Maintenance open spaces and community development in large scale housing development is one of the most important issues. We(UDC) established a resident participation activity for maintenance and use open space with community development in Hachioji New Town from 1997. The purpose of this study is to establish resident participation activities for maintenance and use open space with community development in Hajichioji New Town, and to clarify the characteristics and to on sider about efficiency of the activity. We established Minamino Shizen-Juku as a methodology for maintenance and use open spaces at the same time Hachioji New Town was opened in 1997. The activity has continued by now in 2001. We conducted questionnaire survey to make sure efficiency and characteristics of the activity past three years. Minamino Shizen-Juku (nature friendly lessons) is a resident participation activity in Hachioji New Town. It was established in 1997 as soon as the new town was opened, this year is fifth since it was started. It has three objects. 1)Maintenance and use woody environment, 2) Community development, 3) Continuation and renewal native culture. And it has general course, three special courses and one extra course were established in the activity. 1) General course is an activity participated all of member. It's included farming experience in the native field and seasonal events. 2) Rice growing and woods maintenance course is rice growing and wild wood maintenance in the park as a series of annual farming activities. 3) Benefaction from farm course is started from planting spring vegetable at Mizukoshi(Leader of Minamino Shezen-Juku)'s field. There is the number of participant limit because of the area of the field. 4) Watching nature course is watching seasonal wild flowers, trees, animals and plants to know about native nature. 5) Extra program is programmed to know about native history and tradition. It's planned including participant's ideas. Not member can participate in this course too.

• 생태와환경
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• 제52권4호
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• pp.366-377
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• 2019

논 습지는 다양한 야생동물들의 주요 서식공간으로, 급격한 개발 및 환경 변화로 인해 논에 서식하는 야생동물의 생물 다양성 보전에 위협이 되고 있다. 본 연구에서는 서해안에 위치한 논 습지를 이용하는 무미 양서류의 서식지 이용 특성을 규명하고자 2018년 3월부터 10월까지 당진시 대호 간척 농지에 서식하는 양서류의 풍부도와 서식 환경을 바탕으로 종들에게 영향을 끼친 주요 환경 요인을 파악하고, 서식지 이용 특성을 알아보았다. 연구 결과 조사지역에서는 금개구리(Pelophylax chosenicus)를 포함하여 참개구리 (P. nigromaculatus)와 청개구리 (Hyla japonica)의 서식이 확인되었다. 3종에 영향을 끼치는 환경 요인으로 기온과 습도, 수심, 미소 서식지로 확인되었고, 청개구리는 수온에 영향을 받고 있었으며, 금개구리는 벼의 길이와 농법의 유형에 영향을 받고 있는 것으로 확인되었다. 3종은 모두 기온과 습도, 수심이 증가할수록 개체수가 증가하는 경향을 보였고, 모내기한 필지를 가장 많이 이용했으며, 번식 시기에는 미소 서식지 요인 중 필지를 가장 선호하고 있어 조사지역이 3종의 주요 번식지로 이용되고 있는 것으로 판단된다. 금개구리는 관행에 비해 친환경 농지에서 더 많이 관찰되었는데, 이는 포식자와 제초작업으로 인한 주변 환경의 차이로 인한 원인으로 보인다. 본 연구를 통해 논에 서식하는 무미 양서류 3종이 선호하는 환경 요인은 종에 따라 다른 것을 확인할 수 있었다. 이 결과는 무미 양서류 보전에 중요한 자료를 제공할 것이다.

• The Plant Pathology Journal
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• 제24권2호
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• pp.131-142
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• 2008

Magnaporthe oryzae, the causal agent of the rice blast disease, poses a worldwide threat to stable rice production. The large-scale functional characterization of genes controlling the pathogenicity of M. oryzae is currently under way, but little is known about heat shock protein 40 (Hsp40) function in the rice blast fungus or any other filamentous plant pathogen. We identified 25 genes encoding putative Hsp40s in the genome of M. oryzae using a bioinformatic approach, which we designated M. oryzae heat shock protein forty (MHF 1-25). To elucidate the roles of these genes, we characterized the functions of MHF16 and MHF21, which encode type ill and type n Hsp40 proteins, respectively. MHF16 and MHF21 expression was not significantly induced by heat shock, but it was down-regulated by cold shock. Knockout mutants of these genes $({\Delta}$mhf16 and ${\Delta}$mhf21) were viable, but conidiation was severely reduced. Moreover, sectoring was observed in the ${\Delta}mhf16$ mutant when it was grown on oatmeal agar medium. Conidial germination, appressorium formation, and pathogenicity in rice were not significantly affected in the mutants. The defects in conidiation and colony morphology were fully complemented by reintroduction of wild type MHF16 and MHF21 alleles, respectively. These data indicate that MHF16 and MHF21 play important roles in conidiation in the rice blast fungus.

• 농업과학연구
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• 제41권1호
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• pp.1-7
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• 2014

Ratooning ability is one of the major different traits from perennial to cultivated rice and annual type. We developed a set of 126 introgression lines derived from a cross between Hwayeong and W1944 (O. rufipogon) to gain an insight into the genetic factors underlying differences between common wild rice and cultivated rice. One IL, CR6 among the 126 ILs of $BC_3F_4$ showed a significant difference in rationing ability compared with Hwayeong. To further characterize the rationing ability, CR6 was selected and crossed to Hwayeong to produce three secondary populations, $BC_4F_2$, $BC_4F_3$ and $BC_5F_2$. In the Hwayeong background, the W1944 allele was associated with an increase in rationing ability. QTL analysis showed that the qRAT5 for rationing ability was linked to RM194 ($R^2$=6.6%, 19.6%, and 44.5% in the $BC_4F_2$, $BC_5F_2$, and $BC_5F_3$, respectively). The putative qRAT5 was also tightly linked to QTLs for spikelets per panicle and grain weight indicating that this region harbors a QTL cluster related to domestication. To our knowledge, this is the first report to map the major QTL for ratooning ability in rice. The SSR markers linked to qRAT5 would be useful in marker-assisted selection for breeding lines with enhanced ratooning ability.

• 한국어류학회지
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• 제23권1호
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• pp.70-74
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• 2011

논에 서식하는 미꾸라지는 겨울철 수분증발에 의한 토굴을 형성하였고 피부는 공기 중에 노출되었다. 이때 미꾸라지 피부의 점액세포 변화를 유발하는 환경요인을 분석하기 위하여 진흙과 물을 수조에 채운 후 약 1개월 동안 자연증발시켜 인위적인 토굴형성에 의한 미꾸라지 피부의 공기노출 실험을 여름철에 실시하였다. 그 결과, 공기 중에 피부가 노출된 미꾸라지의 등, 체측, 후두부의 피부 점액세포의 형태는 대부분 크고 길다란 원주세포형으로 변화하였고, 수량 역시 급격히 증가하였는데, 이러한 특정은 겨울철 자연상태에서 나타나는 전형적인 현상이었다.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2017년도 9th Asian Crop Science Association conference
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• pp.144-144
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• 2017

Micronutrients such as zinc (Zn), iron (Fe), manganese (Mn) have important roles for development and growth in plants but it also have roles in animals and humans. In previous studies, a Korean weedy rice, KH2J was selected to have tolerance to heavy metal, lead (Pb) compared with a cultivar, Milyang23. To identify QTLs for micronutrients concentration in grain, an F2 population (120 plants) were developed from a cross between KH2J and an indica rice cultivar, Milyang23. To measure the concentration of eight ions, Zn, Fe, Mn, Pb, calcium (Ca), copper (Cu), cadmium (Cd) and arsenic (As), grains were collected and digested with 65% nitric acid, and the ion contents were measured using inductively coupled plasma mass spectrometry. A total 27 putative quantitative trait loci (QTLs) were detected on 12 chromosomes by single point analysis and 22 putative QTLs were detected by composite interval mapping. The co-locations of QTL for Zn, Fe and Mn were observed on chromosome 5. The QTLs for Cd, Cu and Zn were co-localized on chromosome 10, and QTLs for Zn, As and Mn was on chromosome 12. The Zn concentration in F2 generation showed significant correlation with concentrations of As (r = -0.4), Cu (r = 0.5) and Fe (r = 0.2) (P < 0.01). Also, the Ca concentration was significantly related with Mn and Fe concentrations (P < 0.01). Fine mapping of these QTLs is underway to analyze their functional relationship.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2017년도 9th Asian Crop Science Association conference
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• pp.72-72
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• 2017

We found a new stay-green mutant from 'Pyeongwon' which is an early-maturing rice variety in Korea. The mutant showed green leaves after grain ripening period and it maintained higher SPAD value than wild type rice plant and original variety 'Pyeongwon'. The stay-green trait in rice, three genes have been identified up to date. The non-yellow coloring1 (NYC1) gene encodes a chloroplast-localized short-chain dehydrogenase/reductase (SDR) with three transmembrane domains. The non-yellow coloring3 (NYC3) gene encodes a plastid-localizing alpha/beta hydrolase-fold family protein with an esterase/lipase motif. The Sgr gene encodes a novel chloroplast protein and regulates the destabilization of the light-harvesting chlorophyll binding protein (LHCP) complexes of the thylakoid membranes, which is a prerequisite event for the degradation of chlorophylls and LHCPs during senescence. After sequencing the PCR products, we found a single nucleotide variation($A{\rightarrow}T$) in the NYC1 gene, which changes the amino acid lysine to methionine. The NYC1 gene encodes a short-chain dehydrogenase/reductase(SDR) protein. And we confirmed the co-segregation between SNP and stay-green trait from genotyping the progenies of the mutant.