• 제목/요약/키워드: weighted cell

검색결과 177건 처리시간 0.045초

Weighted Gene Co-expression Network Analysis in Identification of Endometrial Cancer Prognosis Markers

  • Zhu, Xiao-Lu;Ai, Zhi-Hong;Wang, Juan;Xu, Yan-Li;Teng, Yin-Cheng
    • Asian Pacific Journal of Cancer Prevention
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    • 제13권9호
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    • pp.4607-4611
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    • 2012
  • Objective: Endometrial cancer (EC) is the most common gynecologic malignancy. Identification of potential biomarkers of EC would be helpful for the detection and monitoring of malignancy, improving clinical outcomes. Methods: The Weighted Gene Co-expression Network Analysis method was used to identify prognostic markers for EC in this study. Moreover, underlying molecular mechanisms were characterized by KEGG pathway enrichment and transcriptional regulation analyses. Results: Seven gene co-expression modules were obtained, but only the turquoise module was positively related with EC stage. Among the genes in the turquoise module, COL5A2 (collagen, type V, alpha 2) could be regulated by PBX (pre-B-cell leukemia homeobox 1)1/2 and HOXB1(homeobox B1) transcription factors to be involved in the focal adhesion pathway; CENP-E (centromere protein E, 312kDa) by E2F4 (E2F transcription factor 4, p107/p130-binding); MYCN (v-myc myelocytomatosis viral related oncogene, neuroblastoma derived [avian]) by PAX5 (paired box 5); and BCL-2 (B-cell CLL/lymphoma 2) and IGFBP-6 (insulin-like growth factor binding protein 6) by GLI1. They were predicted to be associated with EC progression via Hedgehog signaling and other cancer related-pathways. Conclusions: These data on transcriptional regulation may provide a better understanding of molecular mechanisms and clues to potential therapeutic targets in the treatment of EC.

Idiopathic Hypertrophic Spinal Pachymeningitis with an Osteolytic Lesion

  • Jee, Tae Keun;Lee, Sun-Ho;Kim, Eun-Sang;Eoh, Whan
    • Journal of Korean Neurosurgical Society
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    • 제56권2호
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    • pp.162-165
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    • 2014
  • Idiopathic hypertrophic spinal pachymeningitis (IHSP) is a chronic, progressive, inflammatory disorder characterized by marked fibrosis of the spinal dura mater with unknown etiology. According to the location of the lesion, it might induce neurologic deficits by compression of spinal cord and nerve root. A 58-year old female with a 3-year history of progressive weakness in both lower extremities was referred to our institute. Spinal computed tomography (CT) scan showed an osteolytic lesion involving base of the C6 spinous process with adjacent epidural mass. Magnetic resonance imaging (MRI) revealed an epidural mass involving dorsal aspect of cervical spinal canal from C5 to C7 level, with low signal intensity on T1 and T2 weighted images and non-enhancement on T1 weighted-enhanced images. We decided to undertake surgical exploration. At the operation field, there was yellow colored, thickened fibrous tissue over the dura mater. The lesion was removed totally, and decompression of spinal cord was achieved. Symptoms improved partially after the operation. Histopathologically, fibrotic pachymeninges with scanty inflammatory cells was revealed, which was compatible with diagnosis of idiopathic hypertrophic pachymeningitis. Six months after operation, motor power grade of both lower extremities was normal on physical examination. However, the patient still complained of mild weakness in the right lower extremity. Although the nature of IHSP is generally indolent, decompressive surgery should be considered for the patient with definite or progressive neurologic symptoms in order to prevent further deterioration. In addition, IHSP can present as an osteolytic lesion. Differential diagnosis with neoplastic disease, including giant cell tumor, is important.

고분자 전해질막 수소 연료 전지 분리판 용 흑연/폴리프로필렌/액정고분자 복합 재료의 특성에 관한 연구 (Study on Graphite/Polypropylene/Liquid Crystalline Polymer Composite for a Bipolar Plate of Polymer Electrolyte Membrane Fuel Cell)

  • 비라즈 둔가나;손영곤
    • 한국산학기술학회논문지
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    • 제16권5호
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    • pp.3627-3632
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    • 2015
  • 고분자 전해질 막 연료전지의 분리판 용 흑연/폴리프로필렌(PP)/액정고분자 (LCP) 복합소재의 기계적, 유변학 특성 및 전기전도도에 관하여 연구하였다. 저분자량 PP를 바인더로 사용하는 경우 다른 열가소성 고분자와 비교하여 상당히 높은 전기 전도도를 보임을 확인하였는데 이는 점도가 낮은 PP에 의해 흑연 입자의 분산이 향상되어 나타난 결과임을 확인할 수 있었다. 또한 탄소나노튜브를 소량 첨가하면 복합재료의 전기전도도가 크게 증가하였고 산처리를 하여 산소 관능기를 포함한 탄소나노튜브를 첨가했을 때에는 전기전도도의 증가가 거의 없었다. 이로부터 탄소나노튜브는 비극성 고분자와 친화도가 높음을 알 수 있었다. 저분자량 PP를 바인더로 사용하였을 때는 복합재료의 점도가 사출성형이 가능할 정도로 낮은 것을 관찰할 수 있었다. 그러나 기계적인 강도는 다른 고분자에 비해 현저히 낮았다. 이를 보강하기 위하여 LCP를 혼합하여 복합재료를 제조한 결과 전반적인 물성 밸런스가 잘 맞는 복합재료를 얻을 수 있었다.

Construction of a Novel Mitochondria-Associated Gene Model for Assessing ESCC Immune Microenvironment and Predicting Survival

  • Xiu Wang;Zhenhu Zhang;Yamin Shi;Wenjuan Zhang;Chongyi Su;Dong Wang
    • Journal of Microbiology and Biotechnology
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    • 제34권5호
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    • pp.1164-1177
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    • 2024
  • Esophageal squamous cell carcinoma (ESCC) is among the most common malignant tumors of the digestive tract, with the sixth highest fatality rate worldwide. The ESCC-related dataset, GSE20347, was downloaded from the Gene Expression Omnibus (GEO) database, and weighted gene co-expression network analysis was performed to identify genes that are highly correlated with ESCC. A total of 91 transcriptome expression profiles and their corresponding clinical information were obtained from The Cancer Genome Atlas database. A mitochondria-associated risk (MAR) model was constructed using the least absolute shrinkage and selection operator Cox regression analysis and validated using GSE161533. The tumor microenvironment and drug sensitivity were explored using the MAR model. Finally, in vitro experiments were performed to analyze the effects of hub genes on the proliferation and invasion abilities of ESCC cells. To confirm the predictive ability of the MAR model, we constructed a prognostic model and assessed its predictive accuracy. The MAR model revealed substantial differences in immune infiltration and tumor microenvironment characteristics between high- and low-risk populations and a substantial correlation between the risk scores and some common immunological checkpoints. AZD1332 and AZD7762 were more effective for patients in the low-risk group, whereas Entinostat, Nilotinib, Ruxolutinib, and Wnt.c59 were more effective for patients in the high-risk group. Knockdown of TYMS significantly inhibited the proliferation and invasive ability of ESCC cells in vitro. Overall, our MAR model provides stable and reliable results and may be used as a prognostic biomarker for personalized treatment of patients with ESCC.

다량의 골양물질을 형성한 중심성 거대세포육아종의 영상진단 (Imaging Diagnosis of Central Giant Cell Granuloma Showing Massive Osteoid Material)

  • 이설미;허민석;이삼선;최순철;박태원
    • Imaging Science in Dentistry
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    • 제30권2호
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    • pp.127-131
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    • 2000
  • A 19-year-old man was referred to Seoul National University Dental Hospital for evaluation of a large painless swelling of the left mandibular angle area in August, 1999. The growth had been first noted 6 years ago. He had visited other hospital in 1997. In spite of the treatment given at the hospital, the mass continued to grow rapidly. Conventional radiographs in 1999 showed an expansile, lobulated, and destructive lesion of the left mandibular body. CT scan demonstrated an expansile mass with a corticated margin. Bony septa were seen within the lesion. Internal calcification noted on the bone-setting CT image, and corresponded to the hypointense area in T1-weighted MRI image. MRI clearly delineated the extent of the lesion which had heterogenous intermediate signal intensity in T1-weighted images and heterogenous hyperintense signal intensity in T2-weighted images. The lesion was well-enhanced. Histopathologically, the lesion was well demarcated. Multinucleated giant cells were presented in a fibrous background, demonstrating a storiform pattern. Areas of osteoid rimmed by a few osteoblasts were scattered throughout the lesion. Inflammatory cells, blood vessels, and hemosiderin deposition were also shown. CGCG may show lots of internal calcification foci on the CT, and varied signal intensity in MRI. More cases will be needed to understand the features of the CT & MR finding of CGCG.

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세포독성 자료를 이용한 분류 알고리즘 성능 비교 (Comparison of the performance of classification algorithms using cytotoxicity data)

  • 윤여창;정의배;조나래;주수인;이성덕
    • 응용통계연구
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    • 제31권3호
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    • pp.417-426
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    • 2018
  • 최근 동물실험의 대체방법 중 하나로 쥐의 줄기세포 유래 배상체를 이용하여 독성을 시험하는 방법이 개발되었다. 이는 동물에 직접 약물을 주입하는 것이 아닌 배상체 세포에 약물을 투입하여 세포의 변화에 따른 측정값들을 얻는 방법이다. 본 연구에서는 다범주 세포독성 자료를 이용해 통계적 기법인 판별분석(discriminant analysis)과 머신러닝 기법인 서포트 벡터 머신(support vector machine), 인공신경망(artificial neural network), k-인접이웃분류(k-nearest neighbor)의 성능을 비교하였다. 알고리즘의 성능은 분류 정확도(accuracy)와 가중카파계수(weighted Cohen's kappa coefficient)로 비교하였다.

Assessment of solid components of borderline ovarian tumor and stage I carcinoma: added value of combined diffusion- and perfusion-weighted magnetic resonance imaging

  • Kim, See Hyung
    • Journal of Yeungnam Medical Science
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    • 제36권3호
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    • pp.231-240
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    • 2019
  • Background: We sought to determine the value of combining diffusion-weighted (DW) and perfusion-weighted (PW) sequences with a conventional magnetic resonance (MR) sequence to assess solid components of borderline ovarian tumors (BOTs) and stage I carcinomas. Methods: Conventional, DW, and PW sequences in the tumor imaging studies of 70 patients (BOTs, n=38; stage I carcinomas, n=32) who underwent surgery with pathologic correlation were assessed. Two independent radiologists calculated the parameters apparent diffusion coefficient (ADC), $K^{trans}$ (vessel permeability), and $V_e$ (cell density) for the solid components. The distribution on conventional MR sequence and mean, standard deviation, and 95% confidence interval of each DW and PW parameter were calculated. The inter-observer agreement among the two radiologists was assessed. Area under the receiver operating characteristic curve (AUC) and multivariate logistic regression were performed to compare the effectiveness of DW and PW sequences for average values and to characterize the diagnostic performance of combined DW and PW sequences. Results: There were excellent agreements for DW and PW parameters between radiologists. The distributions of ADC, $K^{trans}$, and $V_e$ values were significantly different between BOTs and stage I carcinomas, yielding AUCs of 0.58 and 0.68, 0.78 and 0.82, and 0.70 and 0.72, respectively, with ADC yielding the lowest diagnostic performance. The AUCs of the DW, PW, and combined PW and DW sequences were $0.71{\pm}0.05$, $0.80{\pm}0.05$, and $0.85{\pm}0.05$, respectively. Conclusion: Combining PW and DW sequences to a conventional sequence potentially improves the diagnostic accuracy in the differentiation of BOTs and stage I carcinomas.

Brain Magnetic Resolution Imaging to Diagnose Bing-Neel Syndrome

  • Kim, Ho-Jung;Suh, Sang-Il;Kim, Joo-Han;Kim, Byung-Jo
    • Journal of Korean Neurosurgical Society
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    • 제46권6호
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    • pp.588-591
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    • 2009
  • Radiologic findings of Bing-Neel syndrome, which is an extremely uncommon complication resulting from malignant lymphocyte infiltration into the central nervous system (CNS) in patients with Waldenstr$\ddot{o}$m's macroglobulinemia (WM), have been infrequently reported due to extreme rarity of the case. A 75-year-old man with WM presented at a neurology clinic with progressive gait and memory disturbances, and dysarthria of 2 months duration. Cerebrospinal fluid and serum protein electrophoresis and immunofixation electrophoresis showed IgM kappa-type monoclonal gammopathy. Brain magnetic resonance imaging revealed multifocal, hyperintense lesions on T2 weighted-images. Brain diffusion-weighted imaging (DWI) demonstrated hyperintensities in cerebral and cerebellar lesions that appeared isointense on apparent diffusion coefficient maps, which were compatible with vasogenic edema. Although histologic analysis is a confirmative study to prove direct cell infiltration into the brain, brain MRI with DWI may be a good supportive study to diagnose Bing-Neel syndrome.

Inflammatory Pseudotumor in the Lateral Ventricle with Repeated Bleeding-Case Report-

  • Park, Jong-Hwa;Nam, Taek-Kyun;Hwang, Sung-Nam;Park, Seung-Won
    • Journal of Korean Neurosurgical Society
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    • 제45권2호
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    • pp.99-102
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    • 2009
  • Inflammatory pseudotumor is an uncommon lesion with unknown etiology characterized by sclerosing inflammation which clinically and radiographically mimics a neoplastic lesion. A 47-year-old man presented with sudden headache and dysarthria. Brain CT scan revealed a $2.6{\times}2.2\;cm$ sized, round, and hyperdense mass in the anterolateral wall of the left lateral ventricular trigone. On MR imaging studies, the mass showed low signal intensity in the wall of the trigone on T2-weighted image, central mixed (iso- and high-) signal intensity with peripheral low-signal intensity on T1-weighted image. Subtle staining of left choroid plexus with irregular shaped distal branch of anterior choroidal artery was found on the cerebral angiography. These findings suggested a small tumorous lesion originated from the left choroid plexus. During the hospital days, the mass manifested as repeated hemorrhages. The mass was successfully removed via left occipital transcortical approach. The histopathological report of the specimen was hemorrhage and fibrosis, with dense lymphoplasma cell infiltration, suggestive of an inflammatory pseudotumor.

비압축성 열유동 해석을 위한 비엇갈림 격자법에 대한 연구 (A Study of Non-staggered Grid Approach for Incompressible Heat and Fluid Flow Analysis)

  • 김종태;김상백;김희동;맹주성
    • 한국전산유체공학회지
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    • 제7권1호
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    • pp.10-19
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    • 2002
  • The non-staggered(collocated) grid approach in which all the solution variables are located at the centers of control volumes is very popular for incompressible flow analyses because of its numerical efficiency on the curvilinear or unstructured grids. Rhie and Chow's paper is the first in using non-staggered grid method for SIMPLE algorithm, where pressure weighted interpolation was used to prevent decoupling of pressure and velocity. But it has been known that this non-staggered grid method has stability problems when pressure fields are nonlinear like in natural convection flows. Also Rhie-Chow scheme generates large numerical diffusion near curved walls. The cause of these unwanted problems is too large pressure damping term compared to the magnitude of face velocity. In this study the magnitude of pressure damping term of Rhie-Chow's method is limited to 1∼10% of face velocity to prevent physically unreasonable solutions. The wall pressure extrapolation which is necessary for cell-centered FVM is another source of numerical errors. Some methods are applied in a unstructured FV solver and analyzed in view of numerical accuracy. Here, two natural convection problems are solved to check the effect of the Rhie-Chow's method on numerical stability. And numerical diffusion from Rhie-Chow's method is studied by solving the inviscid flow around a circular cylinder.