• Genomics & Informatics
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• v.10 no.4
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• pp.249-255
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• 2012

In this study, fosmid cloning strategies were used to assess the microbial populations in water from the International Space Station (ISS) drinking water system (henceforth referred to as Prebiocide and Tank A water samples). The goals of this study were: to compare the sensitivity of the fosmid cloning strategy with that of traditional culture-based and 16S rRNA-based approaches and to detect the widest possible spectrum of microbial populations during the water purification process. Initially, microbes could not be cultivated, and conventional PCR failed to amplify 16S rDNA fragments from these low biomass samples. Therefore, randomly primed rolling-circle amplification was used to amplify any DNA that might be present in the samples, followed by size selection by using pulsed-field gel electrophoresis. The amplified high-molecular- weight DNA from both samples was cloned into fosmid vectors. Several hundred clones were randomly selected for sequencing, followed by Blastn/Blastx searches. Sequences encoding specific genes from Burkholderia, a species abundant in the soil and groundwater, were found in both samples. Bradyrhizobium and Mesorhizobium, which belong to rhizobia, a large community of nitrogen fixers often found in association with plant roots, were present in the Prebiocide samples. Ralstonia, which is prevalent in soils with a high heavy metal content, was detected in the Tank A samples. The detection of many unidentified sequences suggests the presence of potentially novel microbial fingerprints. The bacterial diversity detected in this pilot study using a fosmid vector approach was higher than that detected by conventional 16S rRNA gene sequencing.

• Journal of Mushroom
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• v.1 no.1
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• pp.28-33
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• 2003

Pseudomonas tolaasii causing brown blotch disease was detected by PCR from water samples collected from the oyster mushroom cultivation farms to find the contamination level of the pathogen in water. Sixteen water samples (28.1%) contain less than 1,000 cfu, 31 samples (54.4%) contain 1,001-10,000 cfu, 6 samples (10.5%) contain 10,001-100,000 cfu, and 4 samples (7%) contain of bacteria per milliliter. P. tolaasii-specific DNA band was amplified in 3 samples (5.3%) by nested-PCR and in 20 samples (35.1%) by immunocapture (IC)-nested PCR respectively. These results suggest that IC-nested-PCR was much more sensitive than nested-PCR in detection of P. tolaasii and a quite few waters using for oyster mushroom cultivation were contaminated with P. tolaasii.

• Parasites, Hosts and Diseases
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• v.49 no.1
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• pp.9-15
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• 2011

To understand the distribution of Giardia cysts in drinking water supplies in Seoul, Korea, we collected water samples quarterly at 6 intakes in the Han River, its largest stream and 6 conventional water treatment plants (WTPs) serving drinking water, from 2000 to 2009. Giardia cysts in each of 10 L water were confirmed in 35.0% of intake water samples and the arithmetic mean was 1.65 cysts/10 L (range 0-35 cysts/10 L). The lowest cyst density was observed at Paldang and Kangbuk intakes, and the pollution level was higher at 4 intakes downstream. It seemed that these 4 intakes were under influence of Wangsuk stream at the end of which cysts were found in all samples with the mean of 140 cysts/10 L. The annual mean number of cysts was 0.21-4.21 cysts/10 L, and the cyst level at the second half of the 10 years was about 1/5 of that at first half on average. The cysts were more frequently found in winter, and their mean density was 3.74 cysts/10 L in winter and 0.80-1.08 cysts/10 L in other seasons. All finished water samples collected at 6 WTPs were negative for Giardia in each of 100 L sample for 10 years and cyst removal by physical process was average 2.9-log. It was concluded that conventional water treatment at 6 WTPs of Seoul appears to remove the cysts effectively under the present level of their source water. Domestic wastewater from the urban region could be an important source of Giardia pollution in the river.

• Journal of Korean Society on Water Environment
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• v.33 no.2
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• pp.181-186
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• 2017

This paper aimed to evaluate the results of alternative acute toxicity test on 83 wastewater samples. Each sample was tested by traditional method (using laboratory cultured D. magna as a test organism) and alternative method (using Toxikit which can be purchased from a specialized company). The relationship between Lab. culture toxicity and Toxkits toxicity indicated good relation ($r^2=0.84$, p<0.01, n = 83). Number of samples which showed a small difference of lower than 0.5 between two test methods were 52 and they account for 63 percent of collected samples. In addition, these 52 samples had a lower average toxicity of TU 0.5 (Lab. culture method) and TU 0.45 (Toxkits method). Whereas samples which indicated big difference of test results between two methods, had a tendency to show higher toxicity. From these results, alternative toxicity test method could be applied to the official test method, if samples would have a lower toxicity less than TU 2. Also, Toxikit standard toxicant test results indicated $EC_{50}$ values between 0.93 and 1.68 mg/L and these results were considered as valid for quality control standard.

• Asian-Australasian Journal of Animal Sciences
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• v.12 no.2
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• pp.220-225
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• 1999

The environmental conditions in smallholder dairy farms especially the effects of dairy wastes on waters and soil were the main objectives of this investigation. Forty-three dairy farms from an older dairy cooperative (Nongpho Dairy Cooperative, NP) were compared with four dairy fauns from relatively new dairy cooperative (Kamphaengsaen Dairy Cooperative, KS) for the quality parameters of water and soil samples during a 12-month period. Forty-three farms at NP were from three geographical areas and three levels farm crowdedness. The results from this study clearly showed that the waste waters from older dairy barns contained much higher levels of organic and inorganic substances which could create environmental pollution if not properly managed. The differences in waste water qualities due to areas and seasons were not significant, while waste water samples from crowded farms tended to contain higher averages of waste water parameters such as COD and BOD. Highly significant correlations between pairs of waste water parameters indicated that certain parameters can be used without the need for chemical analysis of some other parameters. The qualities of well water on dairy farms as well as water samples from public waterways nearby indicated some contamination of dairy wastes such as manure. Storage and sun-drying of dairy manure on bare soil surface could result in the contamination of underground water and nearby water sources. Some recommendations from this study if implemented can prevent environmental pollution in smallholder dairy farms.

• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 2005.04a
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• pp.344-347
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• 2005

The purpose of the study for the development of the technologies of water quality monitoring and contamination protection at water resource aquifer is to secure the groundwater as potable water resources. The results of water analysis as a basis of potable water criteria showed that 30 groundwater samples among 138 samples of small water supply system (21.7%) were exceeded the water criteria. The concentrations of Cl, $NO_3$ and Na for granite area are higher than those of gneiss and metasedimentary rocks of Ogcheon belt area and they are caused by the high vulnerability of groundwater at granite region where the residential area and cultivated land are concentrated. The spatial distribution of components indicated the close relationships between water quality and geology, land use, and topography. The multivariate statistical results showed that the water samples are divided into three groups by geology.

• Korean Journal of Ecology and Environment
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• v.35 no.4 s.100
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• pp.257-265
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• 2002

The current study was performed to elucidate the relationship between the anatoxin -a produced by cyanobacteria and aquatic environmental factors, Algal and water samples were collected from the Daechung Reservoir from June to November 2001. The physical factors of the water quality were measured in sifu, while the biological and chemical factors were examined in the laboratory. The concentrations of anatoxin-a in the algal and water samples were analyzed by HPLC using a fluorescence detector, and ranged from $0.61-8.68\;{\mu}g/g$ dw in the algal samples and $0.01-0.08\;{\mu}g/L$ in the water samples. The suggested maximum concentration of anatoxin-a for safe drinking water is $1\;{\mu}g/L$. The concentrations of anatoxin-a in the algal and water samples were highest in July. The relationships between tile aquatic environmental factors and the anatoxin-a concentration were also analyzed to identify the crucial elements for toxin production. The anatoxin-a concentrations in the algal samples exhibited a high correlation with nitrate, the TN/TP ratio, TDN (P<0.05), and TPN/TPP ratio (P<0.01), whereas the anatoxin-a concentrations in the water samples were highly related to the water temperature, conductivity (P<0.01) , pH, phycocyanin, and phycocyanin/chlorophyll a ratio (P<0.05).

• Archives of Pharmacal Research
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• v.20 no.6
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• pp.637-642
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• 1997

Degradation of a compound with a hydroxyl group during the course of its diffusion across the skin was investigated. Based on the experimental findings of ashortened retention time of a degradant peak from post-diffusion samples and from the ability to evaporate radioactivity from such samples, it seems that during diffusion the parent compound degrades into a more hydrophilic product which is then oxidized. A tritium label at the carbon with a hydroxyl group was released as a tritiated water. When the post-diffusion samples were left open to the air allowing evaporation of water, there was a corresponding decrease in radioactivity of such samples. There was a linear relationship between the time left open and the fraction of radioactivity lost. When such samples were fractionated by HPLC, and then had their radioactivities measured by scintillation counting, two peaks wre identified. The first peak, which may be attributable to tritiated water, was eluted at the same retention time as the solvent front. The second peak eluted at the retention time of the parent compound. When the evaporation/loss of radioactivity experiment was repeated using a $^{14}C$-labeled compound there was no significant loss of radioactivity, indicating that the earlier loss with $^{3}H$-labeled compound was related to the formation and loas sof tritiated water.

• Korean Journal of Microbiology
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• v.36 no.4
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• pp.273-278
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• 2000

The aacCl, aacC2, aacC3, and aacC4 genes, which encode aminoglycoside acetyltransferase AAC(3)-I, AA(3)-II, AAC(3)-III, and AAC(3)-IV, respectively, and aerolysin genes in water samples from Juam lake were surveyed by polymerase chain reaction. Surface water was collected from January 1996 to December 1998, and then bacterial DNA was extracted from the water. Twelve samples were tested by PCR to servey the genes for aminoglycoside acetyltransferase and aerolysin in the lake water. The aacC2 gene was detected in 9 of 12 DNA samples. Among 9 samples showing aacC2 positive, 7 samples were associated with Tn3 sequence. However, none of the twelve samples amplified the expected DNA fragment for aacC1, aacC3, and aacC4 genes. PCR primer to detect the aerolysin gene was designed using the conserved region of the genes for aerolysin and hemolysin of Aeromonas spp. This primer set successfully amplified the expected 414 bp PCR product with the DNA samples from the lake water. The aerolysin gene was detected in 7 of 12 DNA samples. When Southern hybridization of the gel with probe was performed, the aerolysin gene was detected in 10 of 12 DNA samples. However, the seasonal fluctuation of these genes was not found.

• Parasites, Hosts and Diseases
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• v.48 no.3
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• pp.219-224
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• 2010

This study has been conducted to estimate the occurrence of Cryptosporidium oocysts in water supplies in the Metropolitan area of Seoul, South Korea, for 10 years from 2000 to 2009. Water samples were collected quarterly at 6 intakes in the Han River and its largest stream and 6 conventional Water Treatment Plants (WTPs) serving drinking water for 10 million people of Seoul. Cryptosporidium oocysts were found in 22.5% of intake water samples and arithmetic mean was 0.65 oocysts/10 L (range 0-22 oocysts/10 L). Although the annual mean of oocyst number was as low as 0.04-1.90 oocysts/10 L, 3 peaks in 2004 and 2007 were observed and the pollution level was a little higher in winter. The lowest density was observed at Paldang intake and the pollution level increased at Kuui and Jayang intakes. At the end of the largest stream, oocysts were found in 70% of collected samples (mean 5.71 oocysts/10 L) and it seemed that its joining the Han River resulted in the increase at Kuui intake and downstream. Oocyst removal by physical process exceeded 2.0-2.3 log and then all finished water samples collected at 6 WTPs were negative for Cryptosporidium in each 100 L sample for 10 years. These results suggested that domestic wastewater from the urban region could be a source of Cryptosporidium pollution and separating sewage systems adjacent to the intakes could be meaningful for some intakes having weakness related to parasitological water quality.