• Title/Summary/Keyword: variant detection

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Process Fault Probability Generation via ARIMA Time Series Modeling of Etch Tool Data

  • Arshad, Muhammad Zeeshan;Nawaz, Javeria;Park, Jin-Su;Shin, Sung-Won;Hong, Sang-Jeen
    • Proceedings of the Korean Vacuum Society Conference
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    • 2012.02a
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    • pp.241-241
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    • 2012
  • Semiconductor industry has been taking the advantage of improvements in process technology in order to maintain reduced device geometries and stringent performance specifications. This results in semiconductor manufacturing processes became hundreds in sequence, it is continuously expected to be increased. This may in turn reduce the yield. With a large amount of investment at stake, this motivates tighter process control and fault diagnosis. The continuous improvement in semiconductor industry demands advancements in process control and monitoring to the same degree. Any fault in the process must be detected and classified with a high degree of precision, and it is desired to be diagnosed if possible. The detected abnormality in the system is then classified to locate the source of the variation. The performance of a fault detection system is directly reflected in the yield. Therefore a highly capable fault detection system is always desirable. In this research, time series modeling of the data from an etch equipment has been investigated for the ultimate purpose of fault diagnosis. The tool data consisted of number of different parameters each being recorded at fixed time points. As the data had been collected for a number of runs, it was not synchronized due to variable delays and offsets in data acquisition system and networks. The data was then synchronized using a variant of Dynamic Time Warping (DTW) algorithm. The AutoRegressive Integrated Moving Average (ARIMA) model was then applied on the synchronized data. The ARIMA model combines both the Autoregressive model and the Moving Average model to relate the present value of the time series to its past values. As the new values of parameters are received from the equipment, the model uses them and the previous ones to provide predictions of one step ahead for each parameter. The statistical comparison of these predictions with the actual values, gives us the each parameter's probability of fault, at each time point and (once a run gets finished) for each run. This work will be extended by applying a suitable probability generating function and combining the probabilities of different parameters using Dempster-Shafer Theory (DST). DST provides a way to combine evidence that is available from different sources and gives a joint degree of belief in a hypothesis. This will give us a combined belief of fault in the process with a high precision.

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Probability of Antibody Formation against Circumsporozoite Protein of Plasmodium vivax among Korean Malaria Patients

  • Nam, Ho-Woo;Song, Kyoung Ju;Ahn, Hye Jin;Yang, Zhaoshou;Chong, Chom-Kyu;Cho, Pyo Yun;Ahn, Seong Kyu;Kim, Tong-Soo
    • Parasites, Hosts and Diseases
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    • v.52 no.2
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    • pp.143-149
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    • 2014
  • To evaluate the seroprevalence against circumsporozoite protein (CSP) of Plasmodium vivax in sera of Korean patients, the central repeating domain (CRD) of CSP was cloned and analyzed. From the genomic DNA of patient's blood, 2 kinds of CSPs were identified to belong to a VK210 type, which is the dominant repeating of GDRA(D/A)GQPA, and named as PvCSPA and PvCSPB. Recombinantly expressed his-tagged PvCSPA or PvCSPB in Escherichia coli reacted well against sera of patients in western blot, with the detecting rate of 47.9% (58/121), which included 15 cases positive for PvCSPA, 6 cases positive for PvCSPB, and 37 cases for both. The mixture of PvCSPA and PvCSPB was loaded to a rapid diagnostic test kit (RDT) and applied with the same set of patient sera, which resulted in detection rates of 57.0% (69/121). When the protein sequences of PvCSPA were compared with those of P. vivax in endemic regions of India and Uganda, they were compatibly homologous to PvCSPA with minor mutations. These results suggested that the recombinant PvCSPA and PvCSPB loaded RDT may be a milestone in latent diagnosis which has been a hot issue of domestic malaria and important for radical therapy in overlapped infections with P. falciparum in tropical and subtropical areas. During the biological process of malarial infection, exposure of CSP to antigen-antibody reaction up to 57.0% is the first report in Korea.

Detection of KRAS mutations in plasma cell-free DNA of colorectal cancer patients and comparison with cancer panel data for tissue samples of the same cancers

  • Min, Suji;Shin, Sun;Chung, Yeun-Jun
    • Genomics & Informatics
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    • v.17 no.4
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    • pp.42.1-42.6
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    • 2019
  • Robust identification of genetic alterations is important for the diagnosis and subsequent treatment of tumors. Screening for genetic alterations using tumor tissue samples may lead to biased interpretations because of the heterogeneous nature of the tumor mass. Liquid biopsy has been suggested as an attractive tool for the non-invasive follow-up of cancer treatment outcomes. In this study, we aimed to verify whether the mutations identified in primary tumor tissue samples could be consistently detected in plasma cell-free DNA (cfDNA) by digital polymerase chain reaction (dPCR). We first examined the genetic alteration profiles of three colorectal cancer (CRC) tissue samples by targeted next-generation sequencing (NGS) and identified 11 non-silent amino acid changes across six cancer-related genes (APC, KRAS, TP53, TERT, ARIDIA, and BRCA1). All three samples had KRAS mutations (G12V, G12C, and G13D), which were well-known driver events. Therefore, we examined the KRAS mutations by dPCR. When we examined the three KRAS mutations by dPCR using tumor tissue samples, all of them were consistently detected and the variant allele frequencies (VAFs) of the mutations were almost identical between targeted NGS and dPCR. When we examined the KRAS mutations using the plasma cfDNA of the three CRC patients by dPCR, all three mutations were consistently identified. However, the VAFs were lower (range, 0.166% to 2.638%) than those obtained using the CRC tissue samples. In conclusion, we confirmed that the KRAS mutations identified from CRC tumor tissue samples were consistently detected in the plasma cfDNA of the three CRC patients by dPCR.

A Method to Collect Trusted Processes for Application Whitelisting in macOS (macOS 운영체제에서 화이트리스트 구축을 위한 신뢰 프로세스 수집 연구)

  • Youn, Jung-moo;Ryu, Jae-cheol
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.28 no.2
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    • pp.397-405
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    • 2018
  • Blacklist-based tools are most commonly used to effectively detect suspected malicious processes. The blacklist-based tool compares the malicious code extracted from the existing malicious code with the malicious code. Therefore, it is most effective to detect known malicious codes, but there is a limit to detecting malicious code variants. In order to solve this problem, the necessity of a white list-based tool, which is the opposite of black list, has emerged. Whitelist-based tools do not extract features of malicious code processes, but rather collect reliable processes and verify that the process that checks them is a trusted process. In other words, if malicious code is created using a new vulnerability or if variant malicious code appears, it is not in the list of trusted processes, so it can effectively detect malicious code. In this paper, we propose a method for effectively building a whitelist through research that collects reliable processes in the macOS operating system.

How predictive are temporal lobe changes of underlying TDP-43 pathology in the ALS-FTD continuum?

  • Bueno, Ana Paula Arantes;Bertoux, Maxime;de Souza, Leonardo Cruz;Hornberger, Michael
    • Annals of Clinical Neurophysiology
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    • v.19 no.2
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    • pp.101-112
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    • 2017
  • Detection of underling proteinopathies is becoming increasingly important across neurodegenerative conditions due to upcoming disease intervention trials. In this review, we explored how temporal lobe changes in amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) can potentially predict underlying TDP-43 pathology subtypes in FTD. To date, emphasis has been given to frontal lobe changes in the study of the cognitive and behavioural impairments in both syndromes but an increasing number of pathological, imaging and neuropsychological studies suggest how temporal lobe changes could critically affect the cognition and behaviour of these conditions. In this current article, we reviewed pathological, imaging as well as clinical/neuropsychological findings of temporal involvement in the ALS-FTD continuum, how they relate to temporal lobe changes and the underlying TDP-43 pathology in FTD. Findings across studies show that TDP-43 pathology occurs and coincides in many structures in ALS and FTD, but especially in the temporal lobes. In particular, anterior and medial temporal lobes atrophy is consistently found in ALS and FTD. In addition, memory and language impairment as well as emotional and Theory of Mind processing deficits that are characteristics of the two diseases are highly correlated to temporal lobe dysfunction. We conclude by showing that temporal lobe changes due to TDP-43 type B might be particular predictive of TDP-43 type B pathology in behavioural variant FTD, which clearly needs to be investigated further in the future.

Multistage Adaptive Partial PIC for CDMA System (CDMA 시스템을 위한 Multistage Adaptive Partial PIC)

  • Jeon Jae-Choon;Lee Bong-Hee;Hwang In-Kwan
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.29 no.1A
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    • pp.37-52
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    • 2004
  • In this paper, Multistage Adaptive Partial PIC eliminating effectively the multiple access and multipath interference for DS-CDMA based W-CDMA uplink system is designed and its performance is evaluated with computer simulation. By adaptively controlling the slope of the soft limiter with received signals, the efficiency of the soft limiter can be maximized and the better performance is obtained by solving error floor problem using further precise generation of interference signal. As a result, The proposed Multistage Adaptive Partial PIC with simple optimizing method for time-variant channel showed optimum performance at fewer stages. Besides fewer stages, the interference cancellation at the output of the rake receiver considerably reduced system complexity. The Multistage Adaptive Partial PIC with precise generation and efficient cancellation of interference signal can solve error eoor problem, resulted from initial false detection and improve system performance of high data rate system.

Application of Electrical Resistivity Monitoring Technique to Maintenance of Embankments (저수지의 유지관리를 위한 전기비저항모니터링 기법 응용)

  • Park Sam Gyu;Kim Jung-Ho;Seo Goo Won
    • Geophysics and Geophysical Exploration
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    • v.8 no.2
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    • pp.177-183
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    • 2005
  • The subject of this paper is research into the application of electrical resistivity monitoring to detecting the water leakage of water utilization facilities. For this purpose, we installed a comprehensive monitoring system consisting of resistivity measurement, inclinometer, piezometer, and water gauge at an embankment. Using this monitoring system, we monitored the various kinds of measurement data and compared the resistivity structures and that of hydrological and engineering data in order to investigate the water leakage and stability of the embankment. The variant images of electrical resistivity at the embankment were provided from the monitoring data and we could accurately locate the portion of which resistivities have sharply changed. Furthermore, we could estimate the stability of the embankment more effectively and quantitatively by jointly interpreting the monitoring data of resistivity, water level, pore water pressure, and subsurface displacement. The monitoring experiments in this study led us to the conclusion that for the efficient maintenance of the water utilization facilities, monitoring the resistivity data and hydrological data would be much more preferable to performing the just one-time measurements.

Multi-constrained optimization combining ARMAX with differential search for damage assessment

  • K, Lakshmi;A, Rama Mohan Rao
    • Structural Engineering and Mechanics
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    • v.72 no.6
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    • pp.689-712
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    • 2019
  • Time-series models like AR-ARX and ARMAX, provide a robust way to capture the dynamic properties of structures, and their residuals can be effectively used as features for damage detection. Even though several research papers discuss the implementation of AR-ARX and ARMAX models for damage diagnosis, they are basically been exploited so far for detecting the time instant of damage and also the spatial location of the damage. However, the inverse problem associated with damage quantification i.e. extent of damage using time series models is not been reported in the literature. In this paper, an approach to detect the extent of damage by combining the ARMAX model by formulating the inverse problem as a multi-constrained optimization problem and solving using a newly developed hybrid adaptive differential search with dynamic interaction is presented. The proposed variant of the differential search technique employs small multiple populations which perform the search independently and exchange the information with the dynamic neighborhood. The adaptive features and local search ability features are built into the algorithm in order to improve the convergence characteristics and also the overall performance of the technique. The multi-constrained optimization formulations of the inverse problem, associated with damage quantification using time series models, attempted here for the first time, can considerably improve the robustness of the search process. Numerical simulation studies have been carried out by considering three numerical examples to demonstrate the effectiveness of the proposed technique in robustly identifying the extent of the damage. Issues related to modeling errors and also measurement noise are also addressed in this paper.

Prevalence of Toxoplasma gondii in Dogs in Zhanjiang, Southern China

  • Jiang, Hai-Hai;Li, Ming-Wei;Xu, Min-Jun;Cong, Wei;Zhu, Xing-Quan
    • Parasites, Hosts and Diseases
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    • v.53 no.4
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    • pp.493-496
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    • 2015
  • Toxoplasmosis, caused by Toxoplasma gondii, is a parasitic zoonosis with worldwide distribution. The present study investigated the prevalence of T. gondii in dogs in Zhanjiang city, southern China, using both serological and molecular detection. A total of 364 serum samples and 432 liver tissue samples were collected from the slaughter house between December 2012 and January 2013 and were examined for T. gondii IgG antibody by ELISA and T. gondii DNA by semi-nested PCR based on B1 gene, respectively. The overall seroprevalence of T. gondii IgG antibody was 51.9%, and T. gondii DNA was detected in 37 of 432 (8.6%) liver tissue samples. These positive DNA samples were analyzed by PCR-RFLP at 3'- and 5'-SAG2. Only 8 samples gave the PCR-RFLP data, and they were all classified as type I, which may suggest that the T. gondii isolates from dogs in Zhanjiang city may represent type I or type I variant. This study revealed the high prevalence of T. gondii infection in dogs in Zhanjiang city, southern China. Integrated measures should be taken to prevent and control toxoplasmosis in dogs in this area for public health concern.

Ionotropic Receptor 76b Is Required for Gustatory Aversion to Excessive Na+ in Drosophila

  • Lee, Min Jung;Sung, Ha Yeon;Jo, HyunJi;Kim, Hyung-Wook;Choi, Min Sung;Kwon, Jae Young;Kang, KyeongJin
    • Molecules and Cells
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    • v.40 no.10
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    • pp.787-795
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    • 2017
  • Avoiding ingestion of excessively salty food is essential for cation homeostasis that underlies various physiological processes in organisms. The molecular and cellular basis of the aversive salt taste, however, remains elusive. Through a behavioral reverse genetic screening, we discover that feeding suppression by $Na^+$-rich food requires Ionotropic Receptor 76b (Ir76b) in Drosophila labellar gustatory receptor neurons (GRNs). Concentrated sodium solutions with various anions caused feeding suppression dependent on Ir76b. Feeding aversion to caffeine and high concentrations of divalent cations and sorbitol was unimpaired in Ir76b-deficient animals, indicating sensory specificity of Ir76b-dependent $Na^+$ detection and the irrelevance of hyperosmolarity-driven mechanosensation to Ir76b-mediated feeding aversion. Ir76b-dependent $Na^+$-sensing GRNs in both L- and s-bristles are required for repulsion as opposed to the previous report where the L-bristle GRNs direct only low-$Na^+$ attraction. Our work extends the physiological implications of Ir76b from low-$Na^+$ attraction to high-$Na^+$ aversion, prompting further investigation of the physiological mechanisms that modulate two competing components of $Na^+$-evoked gustation coded in heterogeneous Ir76b-positive GRNs.