• Title/Summary/Keyword: tree species classification

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Current Classification of the Bacillus pumilus Group Species, the Rubber-Pathogenic Bacteria Causing Trunk Bulges Disease in Malaysia as Assessed by MLSA and Multi rep-PCR Approaches

  • Husni, Ainur Ainiah Azman;Ismail, Siti Izera;Jaafar, Noraini Md.;Zulperi, Dzarifah
    • The Plant Pathology Journal
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    • v.37 no.3
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    • pp.243-257
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    • 2021
  • Bacillus pumilus is the causal agent of trunk bulges disease affecting rubber and rubberwood quality and yield production. In this study, B. pumilus and other closely related species were included in B. pumilus group, as they shared over 99.5% similarity from 16S rRNA analysis. Multilocus sequence analysis (MLSA) of five housekeeping genes and repetitive elements-based polymerase chain reaction (rep-PCR) using REP, ERIC, and BOX primers conducted to analyze the diversity and systematic relationships of 20 isolates of B. pumilus group from four rubber tree plantations in Peninsular Malaysia (Serdang, Tanah Merah, Baling, and Rawang). Multi rep-PCR results revealed the genetic profiling among the B. pumilus group isolates, while MLSA results showed 98-100% similarity across the 20 isolates of B. pumilus group species. These 20 isolates, formerly established as B. pumilus, were found not to be grouped with B. pumilus. However, being distributed within distinctive groups of the B. pumilus group comprising of two clusters, A and B. Cluster A contained of 17 isolates close to B. altitudinis, whereas Cluster B consisted of three isolates attributed to B. safensis. This is the first MLSA and rep-PCR study on B. pumilus group, which provides an in-depth understanding of the diversity of these rubber-pathogenic isolates in Malaysia.

The Vegetational Characteristics of Bongamsa Forest Genetic Resources Reserve Area in Mt. Heuyang (희양산 봉암사 산림유전자원보호구역 산림군락구조 특성)

  • Lee, Ho-Young;Oh, Choong-Hyeon;Choi, Song-Hyun;Lee, Soo-Dong
    • Korean Journal of Environment and Ecology
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    • v.26 no.3
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    • pp.382-393
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    • 2012
  • The purpose of this study was to research the vegetation structure of the Bongamsa Forest Genetic Resourses Resreve Area in Mt. Heuyang, Mungyeong, Gyeongsangbuk-do. For doing this, ninety-two plots($100m^2/plot$) were set up and investigated, and then Classification analysis and Ordination analysis were carried out. As a result, the vegetation of this area is divided to nine communities; Quercus mongolica community, Quercus variabilis community, Pinus densiflora community, Pinus densiflora-Quercus serrata community, Pinus densiflora-Quercus mongolica community, Quercus serrata community, Decideous broad leaf community, Pinus koraiensis community, Larix kaempferi community. To compare between the communities, statistical analyses were conducted with topographical condition and the results of the vegetational investigation of each community. In altitude, slope, the number of species, the number of individuals in canopy and the number of individuals of understory layer, the mean averages among the communities were different in statistically significance. Then we analysed the vegetation community structure with Importance Percentage of each stratum. The oak tree communities were expected to keep or expand the actual communities because oak trees are spread widely in canopy and understory layers. But the pine tree dominant communities were expected to be succeeded to oak tree communities in the future because of the wide expansion of oak trees.

Forest Vegetation Classification and Species Composition of Mt. Ilwol, Yeongyang-Gun, Korea (일월산 산림식생의 종구성적 특성)

  • Lee Jung-Hyo;Bae Kwan-Ho;Cho Hyun-Je
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.8 no.3
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    • pp.132-140
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    • 2006
  • Forest vegetation classification and species composition of Mt. Ilwol, Yeongyang-Gun, Korea, were studied combining the Braun-Blanquet approach with numerical syntaxonomical analyses (TWINSPAN). Vegetation types and various ecological characteristics such as flora, constancy classes, species ratio of life-form, species diversity and importance value were analyzed. Sixty-eight samples were taken from a $100m^2$ square plot each. Forest communities were identified as two great types: arid landform of mountainside (AM) and humid fertility of piedmont and valley (HP). The former was divided into 3 communities (Rhododendron mucronulatum, Quercus variabilis, Hosta capitat community) and 2groups, and the latter into 3 communities (Tilia amurensis, Vitis coignetiae, Philadelphus schrenckii community) and 2 groups. Vegetation was classified into 8 units. Floristically, the most represented family was Compositae with 26 species. Species with percentage constance degree of more than 61% was Quercus mongolica (72.1%, IV); Carex siderosticat (III) and Fraxinus rhynchophylla (III) were 50.0 and 41.1%, respectively. Life-forms species ratios for trees, subtrees, shrub, vines, grominoids, forbs and ferns were 18.5, 5.7, 14.9, 6.6, 8.8, 42.4 and 3.1%, respectively, PH type showed from $1.70{\pm}0.50\;to\;1.97{\pm}0.57$ and AM type was from $1.40{\pm}0.18\;to\;1.62{\pm}0.20$ in species diversity; therefore, the former type showed higher species diversity than the latter, According to importance value analysis, Pinus densiflora, Quercus mongolica and Q. variabilis were higher in the tree layer, Q. mongolica in the subtree layer, Fraxinus sieboldiana, R. schlippenbachii, etc. in the shrub layer and Carex siderosticta, Carex humilis, etc. in the herb layer.

Vegetation Classification using KOMPSAT-2 Imagery and High-resolution airborne imagery in Urban Area (KOMPSAT-2 영상 및 고해상도 항공영상을 이용한 도심지역 식생분류)

  • Park, Jeong Gi;Go, Shin Young;Cho, Gi Sung
    • Journal of Korean Society for Geospatial Information Science
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    • v.21 no.4
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    • pp.21-27
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    • 2013
  • Recently, It is increasing that importance of systematic management by carbon sinks in forest resources. Especially, in terms of social, Forest resources in urban areas are important role as well as carbon sinks, and improvement of the natural environment of the city. In this study, through ANOVA analysis that a total of nine different vegetation index from rearranged NIR band of images to Forest tree species classified in urban areas using high-resolution aerial images and satellite images of KOMPSAT-2. And various vegetation indices such as NDVI are divided a species by forest units through statistical analysis. Also, separated species are compared to forest type map by the Forest Service. As a result, it is built as basis for vegetation management in urban areas.

Community Structure of the Ridge Area in the Cheongoksan, the Baekdudaegan (백두대간 청옥산지역 능선부의 식물군집구조)

  • 최송현
    • Korean Journal of Environment and Ecology
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    • v.15 no.4
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    • pp.344-353
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    • 2002
  • To investigate the forest structure and to suggest the basic data of forest in the Cheongoksan and near the ridge area, the Baekdudaegan, thirty-five plots were set up and surveyed. According to the analysis of classification by TWINSPAN, the community was divined by four groups of Quercus mongolica-Fraxinus rhynchophylla(I). Q. mongolica-Acer pseudosieboldianum(II). Q. mongolica-Tripterygium regelii(III), and Q. mongolica-Rhododendron schlippenbachii community(IV). The structure of communities were investigated using importance value by layer. The survey results were summarized as follows:1) the results of annual ring analysis revealed that the age of forest in the Cheongoksan was about 30~150 years old, 2) number of the average species was 6.5$\pm$1.8 and number of average individuals was 68.3$\pm$39.9 per a plot(100$m^2$). From the above results, it was anticipated that Q. mongolica stand will be old-growth forest because they do not have competitor species and a specific ridge environment.

Classification and Stand Characteristics of Subalpine Forest Vegetation at Hyangjeukbong and Jungbong in Mt. Deogyusan (덕유산 향적봉 및 중봉 아고산대의 산림식생유형분류와 임분 특성)

  • Han, Sang Hak;Han, Sim Hee;Yun, Chung Weon
    • Journal of Korean Society of Forest Science
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    • v.105 no.1
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    • pp.48-62
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    • 2016
  • This study was conducted to classify forest vegetation structure and stand feature of Mt. Deogyusan National Park from Hyangjeukbong to Jungbong, 48 plots were surveyed. The type classification of the vegetation structure was performed with Z-M phytosociological method. As a result, Quercus mongolica community group was classified into the Picea jezoensis community, Carpinus cordata community and Tilia amurensis community in community unit. P. jezoensis community was subdivided into Deutzia glabrata group and Viburnum opulus var. calvescens group in group unit. D. glabrata group was subdivided into Acer mandshuricum subgroup and Ribes mandshuricum subgroup and V. opulus var. calvescens group was subdivided into Hemerocallis dumortieri subgroup and Prunus padus subgroup in subgroup unit. In the result of estimating the importance value, it constituted Q. mongolica (23.9%), Abies koreana (14.7%), Taxus cuspidata (10.2%), P. jezoensis (8.2%) and Betula ermanii (7.4%) in tree layer. It constituted Acer komarovii (18.6%), Acer pseudosieboldianum (18.4%) and Q. mongolica (8.9%) in subtree layer. It constituted Rhododendron schlippenbachii (20.7%), A. pseudosieboldianum (17.4%) and Symplocos chinensis (8.5%) in shrub layer. Indicator species analysis of vegetation unit 1 was consisted of Hydrangea serrata, Fraxinus mandshurica and D. glabrata that species prefer moist valley in subalpine or rocks. In the results of analyzing the species diversity, vegetation unit 1, 4 and 5 represented that there were different and complex local distributions. As in the similarity between the vegetation units, the vegetation units 1, 2, 3 and 4 represented high with 0.5 or above. It represented that there wasn't no differences on composition species in vegetation units.

A Comparative Study on the Types of Vascular Bundle Sheath of Sasa with Those of Bambusa (Sasa와 Bambusa속(屬)의 유관속초형(維管束鞘型)에 의(依)한 비교연구(比較硏究))

  • Kim, Jai-Saing
    • Journal of Korean Society of Forest Science
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    • v.39 no.1
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    • pp.35-46
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    • 1978
  • The morphological characteristics of vascular bundle sheath occurring on the culm wall were investigated by using many species of Bambusa and Sasa in order to test new classification method for endomorphological charateristics of Bamboos. The results obtained were as follows. 1. As for the thickness of the culm wall in the culm, it was shown that the culm wall of the Bambusa becomes thinner in propertion to its nearness to the upper part of the tree, but no distinctive difference appeared in the Sasa. 2. It was shown that many species of Bambusa has a, b types but the Sasa had a' type and had a, b types. 3. It was shown that many species of Bambusa had e', h, and i types but the Sasa had not them and both of species had not f type. 4. It was shown that many species of Bambusa had c, d, e, and g types, but the Sasa had c, d, and e types and had not g type. 5. In the classification of Bambusa and Sasa, The method of the physiological classification was more effective than test of external observation, and it will encourage further study.

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Comparison of Vegetation Structure Change between 2003 and 2014 in Forest Fire Damaged Area of Bihwajin Basin, Samcheok in Korea (삼척 비화진 유역 산불피해지의 2003년도와 2014년도의 식생구조 비교)

  • Song, Ju Hyeon;Lim, Joo Hoon;Kwon, Jino;Yun, Chung Weon
    • Journal of Korean Society of Forest Science
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    • v.106 no.2
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    • pp.150-168
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    • 2017
  • This study was carried out to compare stand structure in Bihwajin basin Samcheok-si, Gangwon-do, Korea for ten years between 2003 and 2014, in which occurred the east coastal forest fire in 2000. Data were collected from 32 quadrates that followed by the analysis of vegetation classification according to plant sociology, importance value by Mclntosh and Curtise, species diversity and similarity index. In the result of vegetation classification, the vegetation unit decreased from 7 units to 4 units, and the number of species groups changed from 11 to 7. As a result of importance value (IV) changes, IV of Quercus mongolica, Q. serrata and Q. variabilis was increased by 6.8%, 5.2% and 2.9% in the order, respectively. However, that of Pinus densiflora was decreased by 2.8%. That of major planted species such as Castanea crenata, Chionanthus retusa, Prunus armeniaca var. ansu, Acer triflorum and Koelreuteria paniculata was reduced. As a result of species diversity, it was increased from 0.252 to 0.287 in tree layer, from 0.252 to 0.434 in subtree layer, and from 1.293 to 1.333 in shrub layer. But that in herb layer was decreased from 1.745 to 1.646. As a result of similarity index, it was 0.78, 0.65, 0.72 and 0.55 by layers that showed most difference in herb stratum. Considering the results, this study would be applied to the ecosystem diagnose and management of forest fire damaged area similar to the investigated area.

Ecological Structure of Larix kaempferi in National Park (국립공원 내 일본잎갈나무림의 식생구조)

  • Choi, Song-Hyun;Lee, Sang-Hoon;Shin, Yong-Jin;Cho, Woo;Lee, Myung-Hoon;Kim, Jeong-Ho
    • Korean Journal of Environment and Ecology
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    • v.35 no.6
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    • pp.609-620
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    • 2021
  • This study surveyed six national parks that included a wide range of afforestation among national parks in Korea to analyze the vegetation structure of Larix kaempferi, which occupies the highest ratio among planted areas. Plots were established considering the dominant ratio, diameter at breast height and afforestation area of Larix kaempferi. The purpose of the study was to provide basic data for ecological management to promote diversity. A total of 51 plots were selected based on 400 m2 quadrates. TWINSPAN was used for community classification, and each classified community was analyzed of importance percentage, species diversity, number of species, and populations. The community classification identified7 communities, all dominated by Larix kaempferi in the tree layer and classified by the appearance species of the subtree layer and shrub layer. In communities I, II, and VII that are located in the valley, Zelkova serrata, Morus bombycis, and Fraxinus rhynchophylla appeared, while dominated by Larix kaempferi were in the tree layer. Wetland deciduous broad-leaved species such as Fraxinus rhynchophylla and Morus bombycis frequently appeared in the subtree layer. In community III through VI is located on the slope, Quercus spp., such as Quercus mongolica and Quercus acutissima, mainly appeared while dominated by Larix kaempferi in the tree layer, and Quercus and wetland broad-leaved species frequently appeared in the subtree layer and shrub layer. The average species diversity of Larix kaempferi in the surveyed six national parks was 1.2090, with community III the highest at 1.5413 and community VI the lowest at 0.7042. The average number of species was 9.35±2.90, and the average population was 226.05±89.98.

Phylogeny of Korean Isolates of Phytophthora Species Based on Sequence Analysis of Internal Transcribed Spacer of Ribosomal DNA

  • Hong, Seung-Beom;Jee, Hyeong-Jin;Kim, Sang-Hee;Go, Seung-Joo
    • The Plant Pathology Journal
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    • v.16 no.1
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    • pp.29-35
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    • 2000
  • The internal transcribed spacer regions (ITS I, 5.8S and ITS II) of the ribosomal DNAs were amplified from Korean isolates of Phytophthora spp. and sequenced to characterize them. Sequences from 33 isolates previously identified as P. boehmeriae, P. cactprum, P. cambivora, P. capsici, P. cinnamomi, P. erythroseptica, P. infestans, P. megasperma, P. melonis, P. nicotianae, P. palmivora and P. sojae were compared with published sequences, and a phylogenetic tree was produced. All isolates belonging to 10 species, P. cactorum, P. cambivora, P. capsici, P. cinnamomi P. citricola, P. infestans, P. nicotianae, P. palmivora and P. sojae were clearly clustered into published isolates of each species above 97% bootstrap value. Cucurbits isolates of Phytophthora previously identified as either P. melonis or P. drechsleri showed distinct evolutionary lineages from the P. megasperma was closely related to isolates of P. cryptogea-P. drechsleri showed distinct evolutionary lineages from the P. cryptogea-P. drechsleri complex group, indicating that P. melonis is a valid species. A Korean isolate of P. megasperma was closely related to isolates of P. erythroseptica showed distant genetic relationship with published isolates of P. erythroseptica (CBS 956.87). It is probable that the two Korean isolates could be genetically different from foreign isolates or misidentified. A grouping of species according to ITS sequence divergence matched, to some degree, the broad classification based on type of papilla. However, a separation of semi-papillate species and papillate species was not wvident in this study.

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