• Title/Summary/Keyword: sulfur cycle

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Molecular characterization and docking dynamics simulation prediction of cytosolic OASTL switch cysteine and mimosine expression in Leucaena leucocephala

  • Harun-Ur-Rashid, Md.;Masakazu, Fukuta;Amzad Hossain, Md.;Oku, Hirosuke;Iwasaki, Hironori;Oogai, Shigeki;Anai, Toyoaki
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.36-36
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    • 2017
  • Out of twenty common protein amino acids, there are many kinds of non protein amino acids (NPAAs) that exist as secondary metabolites and exert ecological functions in plants. Mimosine (Mim), one of those NPAAs derived from L. leucocephala acts as an iron chelator and reversely block mammalian cell cycle at G1/S phases. Cysteine (Cys) is decisive for protein and glutathione that acts as an indispensable sulfur grantor for methionine and many other sulfur-containing secondary products. Cys biosynthesis includes consecutive two steps using two enzymes-serine acetyl transferase (SAT) and O-acetylserine (thiol)lyase (OASTL) and appeared in plant cytosol, chloroplast, and mitochondria. In the first step, the acetylation of the ${\beta}$-hydroxyl of L-serine by acetyl-CoA in the existence of SAT and finally, OASTL triggers ${\alpha}$, ${\beta}$-elimination of acetate from OAS and bind $H_2S$ to catalyze the synthesis of Cys. Mimosine synthase, one of the isozymes of the OASTLs, is able to synthesize Mim with 3-hydroxy-4-pyridone (3H4P) instead of $H_2S$ for Cys in the last step. Thus, the aim of this study was to clone and characterize the cytosolic (Cy) OASTL gene from L. leucocephala, express the recombinant OASTL in Escherichia coli, purify it, do enzyme kinetic analysis, perform docking dynamics simulation analysis between the receptor and the ligands and compare its performance between Cys and Mim synthesis. Cy-OASTL was obtained through both directional degenerate primers corresponding to conserved amino acid region among plant Cys synthase family and the purified protein was 34.3KDa. After cleaving the GST-tag, Cy-OASTL was observed to form mimosine with 3H4P and OAS. The optimum Cys and Mim reaction pH and temperature were 7.5 and $40^{\circ}C$, and 8.0 and $35^{\circ}C$ respectively. Michaelis constant (Km) values of OAS from Cys were higher than the OAS from Mim. Inter fragment interaction energy (IFIE) of substrate OAS-Cy-OASTL complex model showed that Lys, Thr81, Thr77 and Gln150 demonstrated higher attraction force for Cys but 3H4P-mimosine synthase-OAS intermediate complex showed that Gly230, Tyr227, Ala231, Gly228 and Gly232 might provide higher attraction energy for the Mim. It may be concluded that Cy-OASTL demonstrates a dual role in biosynthesis both Cys and Mim and extending the knowledge on the biochemical regulatory mechanism of mimosine and cysteine.

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The Effect of SO2-O2 Mixture Gas on Phase Separation Composition of Bunsen Reaction with HIx solution (HIx 용액을 이용한 분젠 반응에서 상 분리 조성에 미치는 SO2-O2 혼합물 기체의 영향)

  • Han, Sangjin;Kim, Hyosub;Ahn, Byungtae;Kim, Youngho;Park, Chusik;Bae, Kikwang;Lee, Jonggyu
    • Transactions of the Korean hydrogen and new energy society
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    • v.23 no.5
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    • pp.421-428
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    • 2012
  • The Sulfur-Iodine (SI) thermochemical hydrogen production process is one of the most promising thermochemical water splitting technologies. In the integrated operation of the SI process, the $O_2$ produced from a $H_2SO_4$ decomposition section could be supplied directly to the Bunsen reaction section without preliminary separation. A $HI_x$ ($I_2+HI+H_2O$) solution could be also provided as the reactants in a Bunsen reaction section, since the sole separation of $I_2$ in a $HI_x$ solution recycled from a HI decomposition section was very difficult. Therefore, the Bunsen reaction using $SO_2-O_2$ mixture gases in the presence of the $HI_x$ solution was carried out to identify the effect of $O_2$. The amount of $I_2$ unreacted under the feed of $SO_2-O_2$ mixture gases was little higher than that under the feed of $SO_2$ gas only, and the amount of HI produced was relatively decreased. The $O_2$ in $SO_2-O_2$ mixture gases also played a role to decrease the amount of a impurity in $HI_x$ phase by only striping effect, while that in $H_2SO_4$ phase was hardly affected.

Characteristics of Hydrogen Iodide Decomposition using Alumina-Supported Ni Based Catalyst (Ni 기반 촉매를 이용한 HI 분해 반응 특성)

  • KIM, JI HYE;PARK, CHU SIK;KIM, CHANG HEE;KANG, KYOUNG SOO;JEONG, SEONG UK;CHO, WON CHUL;KIM, YOUNG HO;BAE, KI KWANG
    • Transactions of the Korean hydrogen and new energy society
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    • v.26 no.6
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    • pp.507-515
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    • 2015
  • HI decomposition reaction requires a catalyst for the efficient production of hydrogen as a key reaction for hydrogen production in sulfur-iodine thermochemical water-splitting (SI) cycle. As a catalyst used in the reaction, the performance of platinum catalyst is excellent. While, the platinum catalyst is not economical. Therefore, studies of a nickel catalyst that could replace platinum have been carried out. In this study, the characteristics of the catalytic HI decomposition on the amount of loaded nickel (Ni = 0.1, 0.5, 1, 3, 5, 10 wt%) were investigated. As the supported Ni amount increased up to 3 wt%, HI decomposition was found to increase in linear proportion. However, the conversion of $Ni/Al_2O_3$ catalyst loaded above 3 wt% was not linear. It was thought that the different HI decomposition characteristics was caused in the size and metal dispersion of Ni particles of catalyst. The physical property of catalyst before and after HI decomposition reaction was characterized by BET, chemisorption, XRD and SEM analysis.

A Study on the Reactivity of Zinc-based Sorbents Using Yellow Earth as Support at Middle Temperatures (황토를 지지체로 사용한 중온건식 아연계 탈황제의 반응특성 연구)

  • 박노국;정용화;이종대;류시옥;이태진
    • Journal of Energy Engineering
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    • v.12 no.4
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    • pp.302-308
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    • 2003
  • The peformence tests of zinc-based desulfurization sorbents using the yellow earth as support for the hot gas clean up were carried out. The zinc-based sorbent with 25 wt% yellow earth was prepared, and their properties such as the reaction rate, the sulfur capacity and the attrition resistance, were investigated. The reactivity tests for hot gas desulfurization was performed at middle temperatures (sulfidation/regeneration:480$^{\circ}C$/580$^{\circ}C$). During multi-cyclic desulfurization, the deactivation of zinc-based sorbent was decreased by the addition of yellow earth, and their efficiency was enhanced. The ZnO/yellow earth sorbent had high reactivity, good regenerability, long-term durability (about 19 gS/100 g sorbent for 10-cycles) and high attrition resistance (AI=19.1%). It was concluded that the peroperties of zinc-based sorbent were improved by metal oxides (Fe$_2$O$_3$, Na$_2$O, MnO$_2$, etc) in the yellow earth. From these results, it was confirmed that the desulfurization properties of zinc-based sorbents at middle temperatures could be improved by the yellow earth using as support.

Physical Properties and Sulfur Absorption Capacity of Spray-dried Solid Sorbents for Desulfurization of Syngas (합성가스 중 $H_2S$ 정제용 탈황제의 물성 및 반응특성)

  • Baek, Jeom-In;Lee, Joong-Beom;Kim, Ji-Woong;Eom, Tae-Hyoung;Ryu, Jeong-Ho;Jeon, Won-Sik;Ryu, Chong-Kul
    • 한국신재생에너지학회:학술대회논문집
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    • 2009.06a
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    • pp.880-883
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    • 2009
  • 석탄가스화복합발전(IGCC) 시스템에서 합성가스 중에 포함된 황화수소($H_2S$)는 후단의 가스 터빈과 같은 장치의 부식을 방지하고, 합성가스를 이용하는 연료전지 등의 연계 공정에서 요구하는 수준에 맞추어 정제되어야 한다. 본 연구에서는 $H_2S$ 정제공정 추가에 따른 IGCC 시스템의 효율저하를 최소화하기 위하여 고온고압에서 사용가능한 탈황제를 분무건조법을 이용하여 제조하고 제조된 탈황제에 대해 물성 및 황 흡수능 시험을 실시하였다. 형상, 내마모도, 평균입자크기, 충진밀도와 함께 제조된 탈황제가 적용되는 유동층 공정에 적합한 강도를 보유하는지 여부를 미국표준시험방법에 의하여 측정하였다. 황 흡수능은 열중량분석기를 반응기로 사용하여 모사 합성 가스 분위기에서 측정하였다. 분무건조 성형된 탈황제의 일부가 구형이 아닌 타원형 또는 도넛 형태를 나타내고 있어 형상 개선을 위한 제조방법 개선이 필요한 것으로 나타났다. 제조된 탈황제는 기공도가 65% 이상으로 macropore가 기공부피의 대부분을, mesopore가 비표면적의 대부분을 제공하고 있었다. 소성온도를 650 $^{\circ}C$에서 750 $^{\circ}C$로 증가시킴에 따라 대체로 강도가 감소하는 경향을 나타내었다. 열중량분석기로 측정된 황 흡수능은 약 10 wt%로 나타났다. 제조된 탈황제 중 일부는 유동층 공정에 적합한 물성을 보유하고 있었으며 반응성 또한 기존에 개발된 탈황제에 버금가는 성능을 나타내어 향후 공정 적용이 가능할 것으로 분석되었다.

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Proteomic analysis of amino acid metabolism differences between wild and cultivated Panax ginseng

  • Sun, Hang;Liu, Fangbing;Sun, Liwei;Liu, Jianzeng;Wang, Manying;Chen, Xuenan;Xu, Xiaohao;Ma, Rui;Feng, Kai;Jiang, Rui
    • Journal of Ginseng Research
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    • v.40 no.2
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    • pp.113-120
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    • 2016
  • Background: The present study aimed to compare the relative abundance of proteins and amino acid metabolites to explore the mechanisms underlying the difference between wild and cultivated ginseng (Panax ginseng Meyer) at the amino acid level. Methods: Two-dimensional polyacrylamide gel electrophoresis and isobaric tags for relative and absolute quantitation were used to identify the differential abundance of proteins between wild and cultivated ginseng. Total amino acids in wild and cultivated ginseng were compared using an automated amino acid analyzer. The activities of amino acid metabolism-related enzymes and the contents of intermediate metabolites between wild and cultivated ginseng were measured using enzyme-linked immunosorbent assay and spectrophotometric methods. Results: Our results showed that the contents of 14 types of amino acids were higher in wild ginseng compared with cultivated ginseng. The amino acid metabolism-related enzymes and their derivatives, such as glutamate decarboxylase and S-adenosylmethionine, all had high levels of accumulation in wild ginseng. The accumulation of sulfur amino acid synthesis-related proteins, such as methionine synthase, was also higher in wild ginseng. In addition, glycolysis and tricarboxylic acid cycle-related enzymes as well as their intermediates had high levels of accumulation in wild ginseng. Conclusion: This study elucidates the differences in amino acids between wild and cultivated ginseng. These results will provide a reference for further studies on the medicinal functions of wild ginseng.

Protective effect of p53 in vascular smooth muscle cells against nitric oxide-induced apoptosis is mediated by up-regulation of heme oxygenase-2

  • Kim, Young-Myeong;Choi, Byung-Min;Kim, Yong-Seok;Kwon, Young-Guen;Kibbe, Melina R.;Billiar, Timothy R.;Tzeng, Edith
    • BMB Reports
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    • v.41 no.2
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    • pp.164-169
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    • 2008
  • The tumor suppressor gene p53 regulates apoptotic cell death and the cell cycle. In this study, we investigated the role of p53 in nitric oxide (NO)-induced apoptosis in vascular smooth muscle cells (VSMCs). We found that the NO donor S-nitroso-N-acetyl-penicillamine (SNAP) increased apoptotic cell death in p53-deficient VSMCs compared with wild-type cells. The heme oxygen-ase (HO) inhibitor tin protoporphyrin IX reduced the resistance of wild-type VSMCs to SNAP-induced cell death. SNAP promoted HO-1 expression in both cell types. HO-2 protein was increased only in wild-type VSMCs following SNAP treatment; however, similar levels of HO-2 mRNA were detected in both cell types. SNAP significantly increased the levels of non-heme-iron and dinitrosyl iron-sulfur clusters in wild-type VSMCs compared with p53-deficient VSMCs. Moreover, pretreatment with FeSO4 and the carbon monoxide donor CORM-2, but not biliverdin, significantly protected p53-deficient cells from SNAP-induced cell death compared with normal cells. These results suggest that wild-type VSMCs are more resistant to NO-mediated apoptosis than p53-deficient VSMCs through p53-dependent up-regulation of HO-2.

Comparative Effects of Gamma Irradiation and Ethylene Oxide Fumigation on Some Chemical Quality of White Ginseng Powder (백삼분말의 몇가지 화학적 품질 특성에 대한 감마선과 에틸렌 옥시드 처리의 영향)

  • Kwon, Joong-Ho;Byun, Myung-Woo;Cho, Han-Ok;Han, Byung-Hoon
    • Korean Journal of Food Science and Technology
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    • v.26 no.3
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    • pp.278-282
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    • 1994
  • Ginseng saponins and proximate components were considerably resistant to both gamma irradiation at less than 10 kGy and commercial ethylene oxide cycle, while sulfur-containing amino acids, reducing sugar, pH, and acidity of white ginseng powder were significantly changed by EO fumigation. The contents of saponins, reducing sugar, pH and acidity were relatively liable to change under the higher relative humidity (90%), especially in the non-treated control sample. However, irradiated samples at optimum-dose range (5 to 10 kGy) depending on the microbial load following airtight packaging showed a good chemical quality for 7 months of storage at $30{\pm}2^{\circ}C$ irrespective of relative humidity.

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SULFIDATION PROCESSING AND Cr ADDITION TO IMPROVE OXIDATION RESISTANCE OF Ti-Al INTERMETALLIC COMPOUNDS AT ELEVATED TEMPERATURES

  • Narita, Toshio;Izumi, Takeshi;Yatagai, Mamoru;Yoshioka, Takayuki
    • Proceedings of the Korean Institute of Surface Engineering Conference
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    • 1999.05a
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    • pp.5-5
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    • 1999
  • A novel process is proposed to improve oxidation resistance of Ti-Al intermetallic compounds at elevated temperatures by both Cr addition and pre-sulfidation, where TiAl alloys withlor without Cr addition were sulfidized at 1173K for 86.4ks at a 1.3 Pa sulfur partial pressure in a $H_2-H_2S$ gas mixture. The pre-sulfidation treatment formed a thin Cr-Al alloy layer as well as 7~10 micrometer $TiAl_3$ and $TiAl_2$ layer, due to selective sulfidation of Ti. Oxidation resistance of the pre-sulfidation processed TiAl 4Cr alloy was examined under isothermal and heat cycle conditions between room temperature and 1173K in air. Changes in $TiAl_3$ into $TiAl_2$ and then TiAl phases as well as their effect on oxidation behavior were investigated and compared with the oxidation behavior of the TiAl-4Cr alloy as TiAl and pre-sulfidation processed TiAl aHoys. After oxidation for up to 2.7Ms a protective $Al_2O_3$ scale was formed, and the pre-formed $TiAl_3$ changed into $TiAl_2$ and the $Al_2Cr$ phase changed into a CrAlTi phase between the $Al_2O_3$ scale and $TiAl_2$ layer. The pre-sulfidation processed TiAl-4Cr alloy had very good oxidation resistance for longer times, up to 2.7 Ms, in contrast to those observed for the pre-sulfidation processed TiAl alloy where localized oxidation occurred after 81 Oks and both the TiAl and TiAl-4Cr alloys themselves corroded rapidly from the initial stage of oxidation

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Biogeochemical Cycles during the mid-Cretaceous Oceanic Anoxic Event 2 (백악기 중기 해양 무산소 사건 2 동안의 생지화학적 순환)

  • Joo, Young Ji
    • Journal of the Korean earth science society
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    • v.43 no.5
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    • pp.569-578
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    • 2022
  • Oceanic Anoxic Event 2 (OAE2) represents a period of mid-Cretaceous when black shale was deposited worldwide. This short period of perturbations in the global biogeochemical cycles spans the Cenomanian-Turonian boundary, marking the peak of the Cretaceous greenhouse, which is characterized by elevated atmospheric pCO2, sealevel highstand, and expansion of oxygen minimum zone. Since the pioneering work in the 1970s, numerous studies have investigated the cause and consequences of the event based on geochemical and isotope proxies, and it is now widely accepted that the enhanced primary production and volcanism during the Cenomanian-Turonian boundary interval were the key environmental factors that triggered OAE2. This study briefly reviews previous OAE2 studies of the carbon, sulfur, and trace metal cycles for mechanistic understanding of the biogeochemical processes during the event.