• Title/Summary/Keyword: structure and diversity

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Genetic diversity and population structure of endangered Neofinetia falcata (Orchidaceae) in South Korea based on microsatellite analysis

  • Han, Jeong Eun;Choi, Byoung-Hee;Kwak, Myounghai
    • Journal of Species Research
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    • v.7 no.4
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    • pp.354-362
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    • 2018
  • Population genetic assessment is essential for the conservation and management of endangered and rare plants. Neofinetia falcata is endangered epiphyte orchid and protected by law in Korea. In Korea, this species is only found on islands in the South Sea of Korea (including Jeju-do) and the southern coast of the Korean Peninsula. We developed nine microsatellite makers to assess the genetic diversity and population genetic structure of three populations of N. falcata. The genetic diversity at the species level was low, which can be attributed to inbreeding or fragmentation into small, isolated populations. A recent bottleneck was detected in one population, likely due to overcollection. N. falcata exhibited moderated levels of differentiation among populations, with the three populations were divided into two clusters based on genetic structure. The genetic diversity and structure of N. falcata are affected by restricted gene flow by pollen or seeds due to isolation and geographic distance. Strategies for in situ and ex situ conservation of this species are been proposed based on the results of our study.

A Polarization Diversity Patch Antenna with a Reconfigurable Feeding Network

  • Lee, Sung Woo;Sung, Youngje
    • Journal of electromagnetic engineering and science
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    • v.15 no.2
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    • pp.115-119
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    • 2015
  • This paper proposes a reconfigurable square-patch antenna with polarization diversity. The proposed antenna consists of a square radiating patch and a Y-shaped feed structure with two PIN diodes. The shape of the feed structure can be changed by adjusting the bias states of the two PIN diodes, which helps switch between two orthogonal linear polarizations. The polarization diversity characteristic is validated by the simulated current distribution and the measured radiation pattern.

Genetic Diversity of Ascaris in China Assessed Using Simple Sequence Repeat Markers

  • Zhou, Chunhua;Jian, Shaoqing;Peng, Weidong;Li, Min
    • Parasites, Hosts and Diseases
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    • v.56 no.2
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    • pp.175-181
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    • 2018
  • The giant roundworm Ascaris infects pigs and people worldwide and causes serious diseases. The taxonomic relationship between Ascaris suum and Ascaris lumbricoides is still unclear. The purpose of the present study was to investigate the genetic diversity and population genetic structure of 258 Ascaris specimens from humans and pigs from 6 sympatric regions in Ascaris-endemic regions of China using existing simple sequence repeat data. The microsatellite markers showed a high level of allelic richness and genetic diversity in the samples. Each of the populations demonstrated excess homozygosity (Ho0). According to a genetic differentiation index (Fst=0.0593), there was a high-level of gene flow in the Ascaris populations. A hierarchical analysis on molecular variance revealed remarkably high levels of variation within the populations. Moreover, a population structure analysis indicated that Ascaris populations fell into 3 main genetic clusters, interpreted as A. suum, A. lumbricoides, and a hybrid of the species. We speculated that humans can be infected with A. lumbricoides, A. suum, and the hybrid, but pigs were mainly infected with A. suum. This study provided new information on the genetic diversity and population structure of Ascaris from human and pigs in China, which can be used for designing Ascaris control strategies. It can also be beneficial to understand the introgression of host affiliation.

Genetic Diversity and Population Structure of a Korean Rice Germplasm Based on DNA Profiles

  • Lee, Kyung Jun;Lee, Jung-Ro;Shin, Myoung-Jae;Cho, Gyu-Taek;Ma, Kyung-Ho;Lee, Gi-An;Chung, Jong-Wook
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.63 no.1
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    • pp.1-7
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    • 2018
  • Information on the patterns of genetic diversity and population structure is essential for the rational use and efficient management of germplasms; accurate information aids in monitoring germplasms, and can also be used to predict potential genetic gains. In this study, we assessed genetic diversity, focusing on Korean rice accessions for theand their sustainable conserved diversity. Using DNA profiling with 12 simple sequence repeat (SSR) markers, we detected a total of 333 alleles among 2,016 accessions. The number of alleles ranged from 21 to 53, with an average of 27.8. Average polymorphism information content was 0.797, with the lowest being 0.667 and the highest 0.940. CA cluster analysis and the model-based population structure revealed two main groups that could be subdivided into five subgroups. Analysis of the molecular variance study based on the SSR profile data showed 5% variance among the profiles, whereas we recorded 93% variance among individuals and 2% variance within individuals. Specifically, the utilized diversity for of the breeding program is restricted in that cultivars were located in limited clades. These results revealed that preserving the diversity of Korean landraces could be useful sources for breeding new rice cultivars, and cwould be the basis for the sustainable conservation and utilization of a Korean rice germplasm.

Performance of differential Space-time Block Coded MIMO System using Cyclic Delay Diversity

  • Kim, Yoon-Hyun;Yang, Jae-Soo;Kim, Jin-Young
    • 한국정보통신설비학회:학술대회논문집
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    • 2007.08a
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    • pp.41-45
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    • 2007
  • Multi-input multi-output (MIMO) system can increase data rate, capacity and bit error rate (BER) performance compare to traditional single antenna system. However MIMO technique is pointed out the problem that has high complexity to design receiver. So a recent trend of research on the MIMO system pays more attention to simplified implementation of receiver structure. In this paper, we propose differential space time block code (STBC) for MIMO system with cyclic delay diversity (CDD). This structure can provide a very close performance to that of the conventional diversity scheme with maximum likelihood (ML) detection without channel estimation block while the receiver structure is highly simplified. Bit error rate (BER) performance of the proposed system is simulated for an AWGN channel by theoretical and simulated approaches. The results of this paper can be applicable to the 4G mobile multimedia communication systems.

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Genetic diversity and population structure between natural and cultivated populations of sea lettuce, Enteromorpha prolifera, in Korea revealed by RAPD markers

  • Chang, Hyo-Jae;Huh, Man-Kyu;Huh, Hong-Wook;Lee, Bok-Kyu
    • Proceedings of the Korean Society of Fisheries Technology Conference
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    • 2003.05a
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    • pp.279-280
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    • 2003
  • Although it has been known though many morphological and physiological studies, its genetic diversity and population structure have not yet been investigated in this species. Therefore, detailed studies, in particular at the DNA level, on genetic diversity of natural populations of wild sea lettuce, and genetic relationships between natural sea lettuce and cultivated sea lettuce are necessary from the viewpoint of plant evolution. (omitted)

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Phylogeography of Gloiopeltis furcata sensu lato (Gigartinales, Rhodophyta) provides the evidence of glacial refugia in Korea and Japan

  • Yang, Mi Yeon;Fujita, Daisuke;Kim, Myung Sook
    • ALGAE
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    • v.36 no.1
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    • pp.13-24
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    • 2021
  • The present-day genetic structure of macroalgal species reflects both geographical history and oceanic circulation patterns as well as anthropogenic introduction across native ranges. To precisely understand the genetic diversity and how the factors shape the current population structure of Gloiopeltis furcata sensu lato, we determined the mitochondrial 5' end of cytochrome c oxidase subunit I (COI-5P) sequences for 677 individuals sampled from 67 sites spanning almost the entire distribution range in Korea and Japan. Results from the phylogenetic analysis and haplotype distribution revealed eleven distinct lineages within G. furcata s.l. along the Korea-Japan coastal areas and displayed divergent phylogeographic patterns among lineages. Despite the closely related lineages distributed in same habitats as high rocky intertidal zone, they display different phylogeographic patterns among lineages. The populations from the south of Korea-Japan harbored the highest genetic diversity and unique endemism in comparison with other populations in the distribution range. This could be the evidence of southern refugia for G. furcata s.l. in the Northwest (NW) Pacific and the recent migration from native to introduced region. The reason is that an exceptional distribution pattern was found high genetic diversity in Hakodate of Japan where is the northern location in the NW Pacific. Our results imply the contemporary influence on the distribution due to current circulation pattern and anthropogenic effects. These phylogeographic findings provide the important insight into cryptic species diversity and the detailed distribution pattern of Gloiopeltis in the NW Pacific.

Comparison of Genetic Diversity among Amaranth Accessions from South and Southeast Asia using SSR Markers (SSR 마커를 이용한 남아시아와 동남아시아 아마란스 자원의 유전적 다양성 비교)

  • Wang, Xiao Qiang;Park, Yong Jin
    • Korean Journal of Medicinal Crop Science
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    • v.21 no.3
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    • pp.220-228
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    • 2013
  • This study was conducted to assess the genetic diversity and population structure of 70 amaranth accessions collected from South and Southeast Asia using 14 simple sequence repeat (SSR) markers. In total, 67 alleles were detected, with an average of 4.79 per locus. Rare alleles comprised a large portion (46.3%) of the detected alleles, and 29 unique alleles associated with rice accessions were also discovered. The mean major allele frequency (MAF), genetic diversity (GD) and polymorphic information content (PIC) of the 14 SSR loci were 0.77, 0.36, and 0.34, respectively. A model-based structural analysis revealed the presence of three subpopulations. The genetic relationships revealed by the neighbor-joining tree method were fairly consistent with the structure-based membership assignments for most of the accessions. All 70 accessions showed a clear relationship to each cluster without any admixtures. We observed a relatively low extent of genetic exchange within or among amaranth species from South and Southeast Asia. The genetic diversity results could be used to identify amaranth germplasms and so facilitate their use for crop improvement.

Genetic Diversity and Population Structure of Mongolian Wheat Based on SSR Markers: Implications for Conservation and Management

  • Ya, Narantsetseg;Raveendar, Sebastin;Bayarsukh, N;Ya, Myagmarsuren;Lee, Jung-Ro;Lee, Kyung-Jun;Shin, Myoung-Jae;Cho, Gyu-Taek;Ma, Kyung-Ho;Lee, Gi-An
    • Plant Breeding and Biotechnology
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    • v.5 no.3
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    • pp.213-220
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    • 2017
  • Production of spring wheat, the major crop in Mongolia, accounts for 98% of the cultivated area. Understanding genetic variability in existing gene bank accessions is critical for collection, conservation and use of wheat germplasms. To determine genetic diversity and population structure among a representative collection of Mongolian local wheat cultivars and lines, 200 wheat accessions were analyzed with 15 SSR markers distributed throughout the wheat genome. A total of 85 alleles were detected, with three to five alleles per locus and a mean genetic richness of 5.66. Average genetic diversity index was 0.69, with values ranging from 0.37-0.80. The 200 Mongolian wheat accessions were mainly divided into two subgroups based on structure and phylogenetic analyses, and some phenotypes were divergent by the subgroups. Results from this study will provide valuable information for conservation and sustainable use of Mongolian wheat genetic resources.

Comparison of Genetic Diversity and Population Structure of Kalopanax pictus (Araliaceae) and its Thornless Variant Using RAPD

  • Huh, Man-Kyu;Jung, Sang-Duk;Moon, Heung-Kyu;Kim, Sea-Hyun;Sung, Jung-Sook
    • Korean Journal of Medicinal Crop Science
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    • v.13 no.2
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    • pp.69-74
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    • 2005
  • Kalopanax pictus is a long-lived woody species mostly distributed in East Asia. K. pictus has been regarded as medically and ecologically important species in Korea. Thornless castor aralia variant, local name 'Cheongsong' is an endemic to Cheongsong province in Korea. Random amplified polymorphic DNA (RAPD) was used to investigate the genetic variation and structure of Korean populations of two species. A high level of genetic variation was found in six K. pictus populations. Twelve primers revealed 49 loci, of which 29 were polymorphic (59.2%). Nei's gene diversity for K.pictus and K. pictus variant were 0.119 and 0.098, respectively. Mean of genetic diversity in K. pictus was higher than average values for species with similar life history traits. The asexual and sexual reproduction, perennial habitat, and longevity are proposed as possible factors contributing to high genetic diversity. An indirect estimate of the number of migrants per generation (Nm=0.857) indicated that gene flow was not extensive among Korean populations of K.pictus. It is suggested that the isolation of geographical distance and reproductive isolation between K.pictus and K.pictus variant populations may have played roles in shaping the population structure of this species.