• Title/Summary/Keyword: strain selection

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In Vivo Expression Technology (IVET) and Its Application in Plant-Associated Bacteria

  • Lee, Seon-Woo
    • The Plant Pathology Journal
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    • v.18 no.2
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    • pp.57-62
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    • 2002
  • In vivo expression technology (IVET) has been developed to study bacterial gene expression in Salmonella typhimurium during host infection. The expression of selected genes by IVET has been elevated in vivo but not in vitro. The selected genes turned out to be important for bacterial virulence and/or pathogenicity. IVET depends on a synthetic operon with a promoterless transcriptional fusion between a selection marker gene and a reporter gene. The IVET approach has been successfully adapted in other bacterial pathogens and plant-associated bacteria using different selection markers. Pseudomonas putida suppresses citrus root rot caused by Phytophthora parasitica and enhances citrus seedling growth. The WET strategy was adapted based on a transcriptional fusion, pyrBC'-lacZ, in P. putida to study the bacterial traits important far biocontrol activities. Several genes appeared to be induced on P. parasitica hyphae and were found to be related with metabolism and regulation of gene expression. It is likely that the biocontrol strain took a metabolic advantage from the plant pathogenic fungus and then suppressed citrus root rot effectively. The result was parallel with those from the adaptation of IVET in P. fluorescens, a plant growth promoting rhizobacteria (PGPR). Interestingly, genes encoding components for type III secretion system have been identified as rhizosphere-induced genes in the PGPR strain. The type III secretion system may play a certain role during interaction with its counterpart plants. Application of IVET has been demonstrated in a wide range of bacteria. It is an important strategy to genetically understand complicated bacterial traits in the environment.

Studies on The Microbial Utilization of Agricultural Wastes (Part 5) Isolation and Selection of Cellulase Producing Fungi (농산폐자원의 미생물학적 이용에 관한 연구 (제오보) 섬유소분해효소 생산 곰팡이의 분리 및 선별)

  • Bae, Moo;Kim, Byung-Hong;Lee, Gye-Jun
    • Microbiology and Biotechnology Letters
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    • v.4 no.3
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    • pp.105-110
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    • 1976
  • In the studies of microbiological utilization of cellulosic wastes, cellulolytic fungi were isolated and screened out. At the first stage, 221 cellulolytic fungi were isolated from different sources such as soils, humus, composts and rotten wood debris by enrichment culture techniques. In the second stage, 36 strains of fungi out of those previously isolated were selected for their cellulase activities estimated by means of filter paper degradation, carboxy methyl cellulose liquefaction and cup method. Activities of C$_1$-cellulase, C$\sub$x/-cellulase and filter paper activity were adopted on the final screening stage and five different strains which are tentatively identified as Aspergillus sp.(strain No. AS-9), Penicillium sp. (strain No. KNI-1-2), Trichoderma, sp. (strain No. KI-7-2, KI-7-5, KI-4-1-1B) were selected for their high potency of C$_1$ and C$\sub$x/-cellulase activities. When rice straw milled and treated with NH$_4$OH was hydrolyzed with the crude enzyme Prepared from the culture broth of Trichoderma sp. (strain No. KI-4-1-1B), saccharification rate was obtained up to 26%.

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Total Ammonia Nitrogen Excretion Rates and Feces Production Rates as an Index for Comparing Efficiency of Dietary Protein Utilization of Offsprings from Selected Korean Strain, Cultured Japanese Strain and Their Intraspecific Hybrid Strain of Juvenile Red Sea Bream, Pagrus major (한국산 선발 계통, 일본산 양식 계통 그리고 이들 두 계통간 잡종 계통 참돔 치어의 총 암모니아성 질소 배설률 및 분 배출률을 통한 사료내 단백질 이용 효율 비교)

  • Oh, Sung-Yong;Noh, Choong-Hwan;Hong, Kyung-Pyo;Kim, Jong-Man
    • Ocean and Polar Research
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    • v.26 no.3
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    • pp.415-423
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    • 2004
  • An experiment was conducted to investigate the differences of total ammonia nitrogen (TAN) excretion rates and feces production rates among the offsprings from cultured Japanese strain (JJ, mean BW; $17.1{\pm}0.1g$), intraspecific hybrid strain between cultured Japanese and selected Korean strain (JK, mean BW: $17.1{\pm}0.1g$) and selected Korean strain(KK, mean BW: $21.5{\pm}0.1g$) of red sea bream in order to compare their dietary protein utilization efficiency. Fish were hand-fed with a commercial diet containing 46.7% crude protein for 2 weeks, three times daily 09:00, 13:00 and 17:00. After daily feeding, the TAN excretion rates reached peaks of 49.03, 58.75 and 36.26mg/kg fish/hr for the JJ, JK and KK strain, respectively, during the daytime. The value of the KK strain was significantly lower than that of the JJ and JX shuin (P<0.05), however daily TAN excretion rates of the JJ, JK and KK strain were not different (P>0.05). When fish were fed at satiation after 4 days of starvation, TAN excretion rates reached the maximum values 4 hours after the feeding fur the KK (31.23 mg/kg fish/hr) and 6 hours after the feeding fur the JJ (44.19 mg/tg fish/hr) and JK strain (41.70 mg/kg fish/hr). After 3 days of starvation, the daily endogenous TAU excretion rates (ETE) for the JJ, JK. and KK strain were 286.91, 215.66 and 179.29mg/kg fish/day, respectively. The value of the KK strain was lower than that of the JJ and JK strain (P<0.05). The total feces production rates of the JJ, JK and KK strain were not significantly different, however the proportions of feces production rates by time for the JJ, JK and KK strain were different (P<0.05). As overall results, efficiency of dietary protein utilization of JJ, JK and KK seems to be different and KK strain could offer a desirable option for aquaculture purpose.

A Study on the Characterization of Gum Vulcanizates by Strain Energy Function of Hyperelastic Material (가황 고무의 변형 에너지 함수를 통한 재료 특성화 방법에 관한 연구)

  • 박현철;윤성기
    • Transactions of the Korean Society of Mechanical Engineers
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    • v.16 no.7
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    • pp.1341-1350
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    • 1992
  • This paper addresses the practical problem of finding a useful strain energy function of the incompressible rubberlike materials. It examines methods by which the form of the functions are determined and shows how the selection of experimental data influences the resulting form of the functions. From this information, an optimal choice of the form of energy functions becomes possible. Phenomenological theories used in this paper are limited to elastic, incompressible material models. Due to the nature of the phenomenological methods, these theories are accurate only for the materials treated. However, they serve as a starting basis for the study of more complicated material behaviors.

Critical Compressive Strain of Concrete under a Long-Term Deformation Effect Part I. Experiments

  • Nghia, Tran Tuan;Chu, In-Yeop;Kim, Jin-Keun
    • International Journal of Concrete Structures and Materials
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    • v.4 no.2
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    • pp.89-96
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    • 2010
  • This paper focuses on the effect of creep on the critical compressive strain (CCS) of concrete. The strain of concrete corresponding to the peak compressive stress is crucial in the selection of the ultimate yield strength of the reinforcing bar used in reinforced concrete columns. Among the various influencing factors, such as the creep, shrinkage, loading rate and confinement, the effect of creep and shrinkage is the most significant. So far, investigations into how these factors can affect the CCS of concrete have been rare. Therefore, to investigate the effect of creep and shrinkage on CCS, an experimental (part I) and a parametric study (part II) were conducted, as presented in these papers (part I considers creep effect, part II considers effect of creep and shrinkage). In part I, experiments pertaining to the loading age, loading rate, loading duration and loading and creep levels were conducted to study the effect of these variables on the CCS of concrete. It was found that the effects of the loading rate, loading age, and level and duration on the CCS of concrete were negligible. However, it is very important to consider the effect of creep.

Development of Acaricidal Resistance and Esterase Isozyme of Tetranychus urticae (Acarina : Tetranychidae) (점박이응애의 살비제저항성 발달과 Esterase Isozyme에 관한 연구)

  • 김상수;이승찬
    • Korean journal of applied entomology
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    • v.29 no.3
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    • pp.170-175
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    • 1990
  • These studies were conducted to examine the mechanism of acaricidal resistance in the twospotted spider mite (Tetranychus urticae Koch). The resistant strains were obtained by succssive selection of five acaricides including carbonphenothion and ethion of organophosphorus compound, dicofol of organochlorine compound, cyhexatin of compound and biphenthrin of synthetic pyrethroid. Esterase isozymes were separated by polyacrlyamide gel susceptible strains. The differences of the esterase isozymes of the resistant strains were Est. 1, Est. 3 in the carbonphenothion-selected strain, Est. 3 in the ethion- and the cyhexatin-selected strains, Est. 1, Est. 3, Est. 7 in the dicofol-selected strain, Est. 7 in the biphenthrin-selected strain as compared to the susceptible strain. With the difference of electrophoretic bands and their activities, esterases were related to the resistant mechanism of tested acaricides.

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Prediction of Mechanical Behavior for Carbon Black Added Natural Rubber Using Hyperelastic Constitutive Model

  • Kim, Beomkeun
    • Elastomers and Composites
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    • v.51 no.4
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    • pp.308-316
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    • 2016
  • The rubber materials are widely used in automobile industry due to their capability of a large amount of elastic deformation under a force. Current trend of design process requires prediction of functional properties of parts at early stage. The behavior of rubber material can be modeled using strain energy density function. In this study, five different strain energy density functions - Neo-Hookean model, Reduced Polynomial $2^{nd}$ model, Ogden $3^{rd}$ model, Arruda Boyce model and Van der Waals model - were used to estimate the behavior of carbon black added natural rubber under uniaxial load. Two kinds of tests - uniaxial tension test and biaxial tension test - were performed and used to correlate the coefficients of the strain energy density function. Numerical simulations were carried out using finite element analysis and compared with experimental results. Simulation revealed that Ogden $3^{rd}$ model predicted the behavior of carbon added natural rubber under uniaxial load regardless of experimental data selection for coefficient correlation. However, Reduced Polynomial $2^{nd}$, Ogden $3^{rd}$, and Van der Waals with uniaxial tension test and biaxial tension test data selected for coefficient correlation showed close estimation of behavior of biaxial tension test. Reduced Polynomial $2^{nd}$ model predicted the behavior of biaxial tension test most closely.

Population Analysis of Iranian Potato virus Y Isolates Using Complete Genome Sequence

  • Pourrahim, Reza;Farzadfar, Shirin
    • The Plant Pathology Journal
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    • v.32 no.1
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    • pp.33-46
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    • 2016
  • In this study, the full-length nucleotide sequences of four Iranian PVY isolates belonging to $PVY^N$ strain were determined. The genome of Iranian PVY isolates were 9,703-9,707 nucleotides long encoding all potyviral cistrons including P1, HC-Pro, P3, 6K1, CI, 6K2, VPg, NIa-Pro, NIb and CP with coding regions of 825, 1,395, 1,095, 156, 1,902, 156, 564, 732, 1,557 and 801 nucleotides in length, respectively. The length of pipo, embedded in the P3 cistron, was 231 nucleotides. Phylogenetic analysis showed that the Iranian isolates clustered with European recombinant NTN isolates in the N lineage. Recombination analysis demonstrated that Iranian $PVY^N$ isolates had a typical European $PVY^{NTN}$ genome having three recombinant junctions while $PVY^N$ and $PVY^O$ were identified as the parents. We used dN/dS methods to detect candidate amino acid positions for positive selection in viral proteins. The mean ${\omega}$ ratio differed among different genes. Using model M0, ${\omega}$ values were 0.267 (P1), 0.085 (HC-Pro), 0.153 (P3), 0.050 (CI), 0.078 (VPg), 0.087 (NIa-pro), 0.079 (NIb) and 0.165 (CP). The analysis showed different sites within P1, P3 and CP were under positive selection pressure, however, the sites varied among PVY populations. To the best of our knowledge, our analysis provides the first demonstration of population structure of $PVY^N$ strain in mid-Eurasia Iran using complete genome sequences and highlights the importance of recombination and selection pressure in the evolution of PVY.

Excellent strain selection and optimal mycelial growth condition of Pleurotus cornucopiae (노랑느타리벗섯(Pleurotus cornucopiae)의 우수균주 선발 및 최적 균사배양)

  • Jang, In-Ja;Chung, Ki-Chul;Chang, Hyun-You
    • Journal of Mushroom
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    • v.3 no.1
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    • pp.40-44
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    • 2005
  • The results of examining selection of optimal mycelial growth condition excellent strain for determining the condition of Pleurotus cornucopiae are as follows. 1) Mycelial growth and density of P. cornucopiae were the highest in the medium of MCM(87.8mm/10d) followed by the order of PDA, YM, MEA and Czapek. 2) Optimal temperature for the mycelial growth and density of P. cornucopiae was shown to be $25^{\circ}C$, but the hyphae were dead at $5^{\circ}C$. The mycelial growth and density of KNAC2003 strain was the highest at $25^{\circ}C$(87.8mm/10d) followed by the order of 25, 30, 20, 35, 10 and $5^{\circ}C$. 3) Optimal pH for the mycelial growth and density was revealed to be 6.0(88.3mm/10d), but the mycelial growth and density were shown to be retarded in above or below pH 6.0.

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Isolation of $\alpha$-Amylase Hyperproducing Strain HG4 from Bacillus sp. and Some Properties of the Enzyme ($\alpha$-Amylase 생산성이 높은 Bacillus sp. HG4의 분리 및 효소 특성)

  • 김무성;오평수
    • Microbiology and Biotechnology Letters
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    • v.19 no.5
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    • pp.464-469
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    • 1991
  • An $\alpha$-amylase producing bacterium, strain 2B, was isolated from soil and identified to genus Bacillus. To enhance $\alpha$-amylase productivity, strain 2B was mutagenized successively with nitrosoguanidine. For an efficient selection of a-amylase hyperproducers, mutants which produced $\alpha$-amylase in the presence of glucose were isolated. The resultant mutant HG4, which was classified as constitutive and catabolite derepressed hyperproducer of a-amylase, produced about 30 folds more $\alpha$-amylase than parental strain in medium containing lactose as carbon source. The strain HG4 grew rapidly and produced enzyme in parallel with cell growth. Moreover, its cell lysis did not occur until time of maximal yield of enzyme, which was considered to be a favorable characteristic for the production and purificiation of enzyme in industrial scale. The enzymatic properties of parental strain 2B and mutant strain HG4 were almost the same. The optimal temperature and pH for enzyme reaction was $70^{\circ}C$ and pH 6.0, respectively, in 'the presence of 0.6mM $Ca^[2+}$ as an effective stabilizer.

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