• Title/Summary/Keyword: stem model

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Impacts of temporal dependent errors in radar rainfall estimate for rainfall-runoff simulation

  • Ko, Dasang;Park, Taewoong;Lee, Taesam
    • Proceedings of the Korea Water Resources Association Conference
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    • 2015.05a
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    • pp.180-180
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    • 2015
  • Weather radar has been widely used in measuring precipitation and discharge and predicting flood risks. The radar rainfall estimate has one of the essential problems in terms of uncertainty and accuracy. Previous study analyzed radar errors to reduce its uncertainty or to improve its accuracy. Furthermore, a recent analyzed the effect of radar error on rainfall-runoff using spatial error model (SEM). SEM appropriately reproduced radar error including spatial correlation. Since the SEM does not take the time dependence into account, its time variability was not properly investigated. Therefore, in the current study, we extend the SEM including time dependence as well as spatial dependence, named after Spatial-Temporal Error Model (STEM). Radar rainfall events generated with STEM were tested so that the peak runoff from the response of a basin could be investigated according to dependent error. The Nam River basin, South Korea, was employed to illustrate the effects of STEM on runoff peak flow.

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Critical diagnostic and cancer stem cell markers in neoplastic cells from canine primary and xenografted pulmonary adenocarcinoma

  • Warisraporn, Tangchang;YunHyeok, Kim;Ye-In, Oh;Byung-Woo, Lee;Hyunwook, Kim;Byungil, Yoon
    • Journal of Veterinary Science
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    • v.23 no.6
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    • pp.89.1-89.7
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    • 2022
  • It is challenging to diagnose metastatic tumors whose cellular morphology is different from the primary. We characterized canine primary pulmonary adenocarcinoma (PAC) and its xenografted tumors by histological and immunohistochemical analyses for critical diagnostic and cancer stem cell (CSC) markers. To generate a tumor xenograft model, we subsequently transplanted the tissue pieces from the PAC into athymic nude mice. Immunohistochemical examination was performed for diagnostic (TTF-1, Napsin A, and SP-A) and CSC markers (CD44 and CD133). The use of CSC markers together with diagnostic markers can improve the detection and diagnosis of canine primary and metastatic adenocarcinomas.

Kidney Organoid Derived from Human Pluripotent and Adult Stem Cells for Disease Modeling

  • Hyun Mi Kang
    • Development and Reproduction
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    • v.27 no.2
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    • pp.57-65
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    • 2023
  • Kidney disease affects a significant portion of the global population, yet effective therapies are lacking despite advancements in identifying genetic causes. This limitation can be attributed to the absence of adequate in vitro models that accurately mimic human kidney disease, hindering targeted therapeutic development. However, the emergence of human induced pluripotent stem cells (PSCs) and the development of organoids using them have opened up a way to model kidney development and disease in humans, as well as validate the effects of new drugs. To fully leverage their capabilities in these fields, it is crucial for kidney organoids to closely resemble the structure and functionality of adult human kidneys. In this review, we aim to discuss the potential of using human PSCs or adult kidney stem cell-derived kidney organoids to model genetic kidney disease and renal cancer.

Calibration Update for the Measuring Total Nitrogen Content in Rice Plant Tissue Using the Near Infrared Spectroscopy

  • Kwon, Young-Rip;Song, Young-Eun;Choi, Dong-Chil;Ryu, Jeong
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.54 no.1
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    • pp.29-35
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    • 2009
  • The aim of the present study was to update the calibration that is used for the measurement of the total nitrogen content in the rice plant samples by using the visible and near infrared spectrum. Before the equation merge, correlation coefficient of calibration equation for nitrogen content on each rice parts was 0.945 (Leaf), 0.928 (Stem), and 0.864 (Whole plant), respectively. In the calibration models created by each part in the rice plant under the various regression method, the calibration model for the leaf was recorded with relatively high accuracy. Among of those, the calibration equation developed by Partial least squares (PLS) method was more accurate than the Multiple linear regression (MLR) method. The calibration equation was sensitive based on variety and location variations. However, we have merged and enlarged various of the samples that made not only to measure the nitrogen content more accurately, but also later sampling populations became more diversified. After merging, $R^2$ value becomes more accurate and significantly to 0.950 (L.), 0.974 (S.), 0.940 (W.). Also, after removal of outlier, R2 values increased into 0.998, 0.995, and 0.997. In view of the results so far achieved, Standard error of prediction (SEP) and SEP (C) were reduced in the stem and whole plant. Biases were reduced in the leaf, stem as well as whole plant. Slopes were high in the stem. Standard deviation reduced in the stem but $R^2$ was high in the stem and whole plant. Result was indicated that calibration equation make update, and updating robust calibration equation from merge function and multi-variate calibration.

Developing Stem Volume Table of Pinus thunbergii Parl. in Southern Region Based on Comparison of Major Taper Equations (주요 수간곡선식 비교에 따른 남부지역 곰솔 수간재적표 개발)

  • Hyun-Soo Kim;Su-Young Jung;Kwang-Soo, Lee
    • Journal of Environmental Science International
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    • v.33 no.7
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    • pp.453-462
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    • 2024
  • This study was carried out for the purpose of selecting the most appropriate taper equation for the actual stands of Pinus thunbergii in the southern coastal region of Korea and then developing a stem volume table to provide basic data for rational management. To develop a volume table of Pinus thunbergii in this region of Korea, 59 sample trees with various diameter distributions were selected and stem analysis was performed. As a result of stem analysis, two trees with abnormal diameter and height growth as the age increased were rejected, and 57 trees were analyzed. To develop the taper equation, seven major variable exponential equations were used, including Kozak 1988, 1994, 2001, 2002, Bi 2000, Muhairwe 1999, and Sharma and Parton 2009. As a result of parameter estimation and statistical verification, the Kozak 1988 model showed the highest goodness of fit with Fit I (Fit Index), RMSE 1.5620, Bias 0.0031, and MAD 1.0784. The diameter of each 10cm stem ridge for the selected model was estimated, and a stem volume table was produced using the mensuration of division (end area formula) using the Smalian equation. As a result of two-sample T-test for volume table of this study and current yield table, the volume for this study was found to be significantly larger at all observation points (p < 0.001). Even for the same tree species, it is judged that differentiated volume tables are needed for each growth environment characteristic.

Effect of Irrigation Automation Using Stem Diameter Variation as an Indicator of Irrigation Timing in Greenhouse Tomato (온실재배 토마토에서 관개시기 진단지표로 경직경 변화를 이용한 관개 자동화 효과)

  • 이변우;신재훈
    • Journal of Bio-Environment Control
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    • v.8 no.4
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    • pp.232-241
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    • 1999
  • The automatic irrigation system using the stem diameter monitoring and the transpiration model for the determination, respectively, of irrigation timing and amount was designed and evaluated for its applicability in pot and field culture of greenhouse tomato. In the pot culture condition, the yield and quality of greenhouse tomato were improved when irrigation was practiced based on the stem diameter monitoring and the transpiration model as compared to the irrigation practice based on soil moisture monitoring. However, the effects were not significant in the field culture condition.

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Role of neuropeptide Y in the bone marrow hematopoietic stem cell microenvironment

  • Park, Min Hee;Min, Woo-Kie;Jin, Hee Kyung;Bae, Jae-sung
    • BMB Reports
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    • v.48 no.12
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    • pp.645-646
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    • 2015
  • The sympathetic nervous system (SNS) or neurotransmitters in the bone marrow microenvironment has been known to regulate hematopoietic stem cell (HSC) functions such as self-renewal, proliferation and differentiation. However, the specific role of neuropeptide Y (NPY) in this process remains relatively unexplored. In this study, we demonstrated that NPY deficient mice have significantly reduced HSC numbers and impaired bone marrow regeneration due to apoptotic destruction of SNS fibers and/or endothelial cells. Moreover, NPY treatment prevented bone marrow impairments in a mouse model of chemotherapy-induced SNS injury, while conditional knockout mice lacking the Y1 receptor in macrophages did not restore bone marrow dysfunction in spite of NPY injection. Transforming growth factor-beta (TGF-β) secreted by NPY-mediated Y1 receptor stimulation in macrophages plays a key role in neuroprotection and HSC survival in the bone marrow. Therefore, this study reveals a new role of NPY in bone marrow HSC microenvironment, and provides an insight into the therapeutic application of this neuropeptide.

Kinetic Properties of Extracted Lactate Dehydrogenase and Creatine Kinase from Mouse Embryonic Stem Cell- and Neonatal-derived Cardiomyocytes

  • Zonouzi, Roseata;Ashtiani, Saeid Kazemi;Hosseinkhani, Saman;Baharvand, Hossein
    • BMB Reports
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    • v.39 no.4
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    • pp.426-431
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    • 2006
  • Embryonic stem cells (ESCs), representing a population of undifferentiated pluripotent cells with both self-renewal and multilineage differentiation characteristics, are capable of spontaneous differentiation into cardiomyocytes. The present study sought to define the kinetic characterization of lactate dehydrogenase (LDH) and creatine kinase (CK) of ESC- and neonatal-derived cardiomyocytes. Spontaneously differentiated cardiomyocytes from embryoid bodies (EBs) derived from mouse ESC line (Royan B1) and neonatal cardiomyocytes were dispersed in a buffer solution. Enzymes were extracted by sonication and centrifugation for kinetic evaluation of LDH and CK with spectrophotometric methods. While a comparison between the kinetic properties of the LDH and CK of both groups revealed not only different Michaelis constants and optimum temperatures for LDH but also different Michaelis constants and optimum pH for CK, the pH profile of LDH and optimum temperature of CK were similar. In defining some kinetic properties of cardiac metabolic enzymes of ESC-derived cardiomyocytes, our results are expected to further facilitate the use of ESCs as an experimental model.

Novel Function of Sprouty4 as a Regulator of Stemness and Differentiation of Embryonic Stem Cells

  • Lee, Jae-Young;Park, Sunghyun;Kim, Kwang-Soo;Ko, Jeong-Jae;Lee, Soohong;Kim, Keun Pil;Park, Kyung-Soon
    • Development and Reproduction
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    • v.20 no.2
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    • pp.149-155
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    • 2016
  • Sprouty (Spry) genes encode inhibitors of the receptor tyrosine kinase signaling cascade, which plays important roles in stem cells. However, the role of Spry4 in the stemness of embryonic stem cells has not been fully elucidated. Here, we used mouse embryonic stem cells (mESCs) as a model system to investigate the role of Spry4 in the stem cells. Suppression of Spry4 expression results in the decreases of cell proliferation, EB formation and stemness marker expression, suggesting that Spry4 activity is associated with stemness of mESCs. Teratoma assay showed that the cartilage maturation was facilitated in Spry4 knocked down mESCs. Our results suggest that Spry4 is an important regulator of the stemness and differentiation of mESCs.

Analysis of Stem Wave due to Long Breakwaters at the Entrance Channel

  • Kwon, Seong-Min;Moon, Seung-Hyo;Lee, Sang-Heon;Yoo, Jae-Woong;Lee, Joong-Woo
    • Journal of Navigation and Port Research
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    • v.41 no.5
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    • pp.345-352
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    • 2017
  • Recently, a new port reserves deep water depth for safe navigation and mooring, following the trend of larger ship building. Larger port facilities include long and huge breakwaters, and mainly adopt vertical type considering low construction cost. A vertical breakwater creates stem waves combining inclined incident waves and reflected waves, and this causes maneuvering difficulty to the passing vessels, and erosion of shoreline with additional damages to berthing facilities. Thus, in this study, the researchers have investigated the response of stem waves at the vertical breakwater near the entrance channel and applied numerical models, which are commonly used for the analysis of wave response at the harbor design. The basic equation composing models here adopted both the linear parabolic approximation adding the nonlinear dispersion relationship and nonlinear parabolic approximation adding a linear dispersion relationship. To analyze the applicability of both models, the research compared the numerical results with the existing hydraulic model results. The gap of serial breakwaters and aligned angles caused more complicated stem wave generation and secondary stem wave was found through the breakwater gap. Those analyzed results should be applied to ship handling simulation studies at the approaching channels, along with the mooring test.