• Title/Summary/Keyword: specific region detection

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Fast Detection of Forgery Image using Discrete Cosine Transform Four Step Search Algorithm

  • Shin, Yong-Dal;Cho, Yong-Suk
    • Journal of Korea Multimedia Society
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    • v.22 no.5
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    • pp.527-534
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    • 2019
  • Recently, Photo editing softwares such as digital cameras, Paintshop Pro, and Photoshop digital can create counterfeit images easily. Various techniques for detection of tamper images or forgery images have been proposed in the literature. A form of digital forgery is copy-move image forgery. Copy-move is one of the forgeries and is used wherever you need to cover a part of the image to add or remove information. Copy-move image forgery refers to copying a specific area of an image itself and pasting it into another area of the same image. The purpose of copy-move image forgery detection is to detect the same or very similar region image within the original image. In this paper, we proposed fast detection of forgery image using four step search based on discrete cosine transform and a four step search algorithm using discrete cosine transform (FSSDCT). The computational complexity of our algorithm reduced 34.23 % than conventional DCT three step search algorithm (DCTTSS).

Detection and genotyping of Giardia intestinalis isolates using intergenic spacer (IGS)-based PCR

  • Lee, Jong-Ho;Lee, Jong-Weon;Park, Soon-Jung;Yong, Tai-Soon;Hwang, Ui-Wook
    • Parasites, Hosts and Diseases
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    • v.44 no.4 s.140
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    • pp.343-353
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    • 2006
  • Giardia intestinalis infections arise primarily from contaminated food or water Zoonotic transmission is possible, and at least 7 major assemblages including 2 assemblages recovered from humans have been identified. The determination of the genotype of G. intestinalis is useful not only for assessing the correlation of clinical symptoms and genotypes, but also for finding the infection route and its causative agent in epidemiological studies. In this study, methods to identify the genotypes more specifically than the known 2 genotypes recovered from humans have been developed using the intergenic spacer (IGS) region of rDNA. The IGS region contains varying sequences and is thus suitable for comparing isolates once they are classified as the same strain. Genomic DNA was extracted from cysts isolated from the feces of 5 Chinese, 2 Laotians and 2 Koreans infected with G. intestinalis and the trophozoites of WB, K1, and GS strains cultured in the laboratory, respectively. The rDNA containing the IGS region was amplified by PCR and cloned. The nucleotide sequence of the 3' end of IGS region was determined and examined by multiple alignment and phylogenetic analysis. Based on the nucleotide sequence of the IGS region, 13 G. intestinalis isolates were classified to assemblages A and B, and assemblage A was subdivided into A1 and A2. Then, the primers specific to each assemblage were designed, and PCR was peformed using those primers. It detected as little as 10 pg of DNA, and the PCR amplified products with the specific length to each assemblage (A1, 176bp; A2, 261 bp; B, 319 bp) were found. The PCR specific to 3 assemblages of G. intestinalis did not react with other bacteria or protozoans, and it did not react with G. intestinalis isolates obtained from dogs and rats. It was thus confirmed that by applying this PCR method amplifying the IGS region, the detection of G. intestinalis and its genotyping can be determined simultaneously.

Sludge Detection Inside Pipes Using Torsional Guided Waves (비틀림 유도파를 이용한 배관 내부 슬러지검출)

  • Park, Kyung-Jo;Kim, Chung-Yup
    • Transactions of the Korean Society for Noise and Vibration Engineering
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    • v.23 no.3
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    • pp.282-290
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    • 2013
  • A new method is presented that uses guided wave techniques for sludge and blockages detection in long-range pipelines. Existing techniques have the limitations that the sludge position needs to be known a priori and the area to be inspected needs to be accessible. Two guided wave techniques have been developed which allow the sludge or blockages to be detected remotely without the need to access the specific location where the pipe is blocked, nor to open the pipe. The first technique measures the reflection of guided waves by sludge which can be used to accurately locate the blocked region; the second technique detects sludge by revealing the changes to the transmitted guided waves propagating in the blocked region or after it. The two techniques complement each other and their combination leads to a reliable sludge or blockage detection. Various types of realistic sludge have been considered in the study and the practical capabilities of the two techniques have been demonstrated.

A Rapid PCR-based Assay for Detecting Hepatitis B Viral DNA Using GenSpector TMC-1000

  • Huh, Bum;Ha, Young-Ju;Oh, Jae-Tak;Park, Eun-Ha;Park, Jin-Su;Park, Hae-Joon
    • Journal of Applied Biological Chemistry
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    • v.49 no.4
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    • pp.143-147
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    • 2006
  • A rapid PCR-based assay for detecting hepatitis B viral DNA(HBV DNA) in serum and plasma was developed using a new PCR instrument named GenSpector(TMC-1000, Samsung electronics). PCR was carried out using a chip-based platform, which enabled 50 PCR cycles with internal controls, and melting-curve analysis in 30 minutes. Verification of the amplified HBV DNA product and the internal control was based on specific melting temperatures(Tm) analysis, executed by the GenSpector software. Primers were designed within the region conserved through HBV genotypes A to F. The lower limit of detection was 840 copies/ml serum, conducted with serial dilutions of a HBV DNA positive control(ACCURUN 325 series 700, Boston Biomedica Inc.). The assay was also compared to another assay for HBV DNA(Versant HBV DNA 3.0 assay, Bayer HealthCare) for 200 samples(each 100 clinical negative and positive samples). The sensitivity and specificity were 100% matched. This rapid PCR-based assay is specific, reproducible, and enables qualitative detection of HBV DNA.

Multiplex RT-PCR Assay for the Detection of Apple stem grooving virus and Apple chlorotic leaf spot virus in Infected Korean Apple Cultivars

  • Park, Hong-Lyeol;Yoon, Jae-Seung;Kim, Hyun-Ran;Baek, Kwang-Hee
    • The Plant Pathology Journal
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    • v.22 no.2
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    • pp.168-173
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    • 2006
  • To develop the diagnostic method for the viral infection in apple, the partial genes corresponding to the N-terminal region of RNA polymerase of Apple stem grooving virus (ASGV) and coat protein of Apple chlorotic leaf spot virus (ACLSV) were characterized from the infected apple cultivars in Korea. Based on the nucleotide sequences of the characterized partial genes, the virus gene-specific primers were designed for the detection of ASGV and ACLSV infected in species of Malus. The RT-PCR using the primers for the genes of ASGV and ACLSV successfully gave rise to 404 and 566 bp DNA fragments, respectively. Using those viral gene-specific primers, the multiplex RT-PCR assays were also established to diagnose the mixed infection by ASGV and ACLSV simultaneously. Furthermore, the control primers, which have to be included for the RT-PCR as an internal control, were designed using the nucleotide sequence of the gene encoding elongation factor $1{\alpha}(EF1{\alpha})$. This multiplex RT-PCR including the control primers provides more reliable, rapid and sensitive assay for the detection of ASGV and ACLSV infected in Korean apple cultivars.

Development of a nucleic acid detection method based on the CRISPR-Cas13 for point-of-care testing of bovine viral diarrhea virus-1b

  • Sungeun Hwang;Wonhee Lee;Yoonseok Lee
    • Journal of Animal Science and Technology
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    • v.66 no.4
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    • pp.781-791
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    • 2024
  • Bovine viral diarrhea (BVD) is a single-stranded, positive-sense ribonucleic acid (RNA) virus belonging to the genus Pestivirus of the Flaviviridae family. BVD frequently causes economic losses to farmers. Among bovine viral diarrhea virus (BVDV) strains, BVDV-1b is predominant and widespread in Hanwoo calves. Reverse-transcription polymerase chain reaction (RT-PCR) is an essential method for diagnosing BVDV-1b and has become the gold standard for diagnosis in the Republic of Korea. However, this diagnostic method is time-consuming and requires expensive equipment. Therefore, Clustered regularly interspaced short palindromic repeats-Cas (CRISPR-Cas) systems have been used for point-of-care (POC) testing of viruses. Developing a sensitive and specific method for POC testing of BVDV-1b would be advantageous for controlling the spread of infection. Thus, this study aimed to develop a novel nucleic acid detection method using the CRISPR-Cas13 system for POC testing of BVDV-1b. The sequence of the BVD virus was extracted from National Center for Biotechnology Information (NC_001461.1), and the 5' untranslated region, commonly used for detection, was selected. CRISPR RNA (crRNA) was designed using the Cas13 design program and optimized for the expression and purification of the LwCas13a protein. Madin Darby bovine kidney (MDBK) cells were infected with BVDV-1b, incubated, and the viral RNA was extracted. To enable POC viral detection, the compatibility of the CRISPR-Cas13 system was verified with a paper-based strip through collateral cleavage activity. Finally, a colorimetric assay was used to evaluate the detection of BVDV-1b by combining the previously obtained crRNA and Cas13a protein on a paper strip. In conclusion, the CRISPR-Cas13 system is highly sensitive, specific, and capable of nucleic acid detection, making it an optimal system for the early point-of-care testing of BVDV-1b.

Development of a Specific antibody for the Detection of Ice Nucleation-Active Bacteria (빙핵세균의 검출을 위한 특이적 항혈청 개발)

  • Lee, Ung;Kwon, Mi-Kyung;Seong, Ki-Young;Cho, Baik-Ho;Kim, Ki-Chung
    • Plant Disease and Agriculture
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    • v.5 no.1
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    • pp.27-33
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    • 1999
  • Frost injury of crops is closely related to the epiphytic population dynamics of ice nucleation-active (INA) bacteria, and the injury can be reduced by decreasing the INA bacterial population. In order to predict the epiphytic population of INA bacteria on crops, a rapid and accurate detection method has to be developed. In the previous report, we produced some antibodies against INA proteins purified from the outer membrane of INA bacteria. However it was difficult to produce the antibodies because the purification procedures of the INA proteins were complicated, and the final yield was too low. We designed a specific peptide from the N-terminal region of INA protein by computer analysis and synthesized the peptide in vitro in this experiment. The peptide sequence was Asp-Ser-Por-Leu-Ser-Leu-His-Ala-Asp, that is corresponding to the highly conserved region in several INA proteins, with predicted beta turn, coiling, and hydrophilic region. A polyclonal anti-INA peptide antiserum produced specifically recognized INA bacteria as few as 10 colony-forming units (CFU) in the ELISA reactions and did not respond to other non-INA bacteria. Serological specificity of the anti-INA peptide antiserum will facilitate the forecasting of the INA bacterial population dynamics on crops.

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Development of a Lateral Flow Strip-Based Recombinase Polymerase Amplification Assay for the Detection of Haemonchus contortus in Goat Feces

  • Wu, Yao-Dong;Wang, Qi-Qi;Wang, Meng;Elsheikha, Hany M.;Yang, Xin;Hu, Min;Zhu, Xing-Quan;Xu, Min-Jun
    • Parasites, Hosts and Diseases
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    • v.59 no.2
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    • pp.167-171
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    • 2021
  • Haemonchosis remains a significant problem in small ruminants. In this study, the assay of recombinase polymerase amplification (RPA) combined with the lateral flow strip (LFS-RPA) was established for the rapid detection of Haemonchus contortus in goat feces. The assay used primers and a probe targeting a specific sequence in the ITS-2 gene. We compared the performance of the LFS-RPA assay to a PCR assay. The LFS-RPA had a detection limit of 10 fg DNA, which was 10 times less compared to the lowest detection limit obtained by PCR. Out of 24 goat fecal samples, LFS-RPA assay detected H. contortus DNA with 95.8% sensitivity, compared to PCR, 79.1% sensitivity. LFS-RPA assay did not detect DNA from other related helminth species and demonstrated an adequate tolerance to inhibitors present in the goat feces. Taken together, our results suggest that LFS-RPA assay had a high diagnostic accuracy for the rapid detection of H. contortus and merits further evaluation.

Detection of View Reversal in a Stereo Video

  • Son, Ji Deok;Song, Byung Cheol
    • IEIE Transactions on Smart Processing and Computing
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    • v.2 no.5
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    • pp.317-321
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    • 2013
  • This paper proposes a detection algorithm for view reversal in a stereoscopic video using a disparity map and motion vector field. We obtain the disparity map of a stereo image was obtained using a specific stereo matching algorithm and classify the image into the foreground and background. Next, the motion vector field of the image on a block basis was produced using a full search algorithm. Finally, the stereo image was considered to be reversed when the foreground moved toward the background and the covered region was in the foreground. The proposed algorithm achieved a good detection rate when the background was covered sufficiently by its moving foreground.

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The Development for Change Detection Technique in the Remotely Sensed Images by GIS (GIS를 이용한 원격탐사영상의 변화탐지기법 개발)

  • 양인태;한성만;박재국;천기선
    • Proceedings of the Korean Society of Surveying, Geodesy, Photogrammetry, and Cartography Conference
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    • 2003.04a
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    • pp.397-408
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    • 2003
  • The information about land use presents future development and vision being the basis of nation development; therefore, it is necessary to more active research that can detect wide land use and changes for the information and efficient management about land use. In this study, we wished to analyze effectively land use changes to Ansan city that is fast changing land use by the latest national land development and urbanization. this study executed land-cover classification using 4 year's Landsat TM images including Ansan city, and efficiently could manage the result of land-cover changes through Arc/Info GRID analysis. Especially, by using change detection system that is developed in this research, we could variously detect land-cover changes, and query and search easily past land-cover changes of pixels that correspond to specific region.

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