• Title/Summary/Keyword: species characterization

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THE ANALYSIS AND DIAGNOSIS OF SOWN PASTURE VEGETATION 2. GROUPING AND CHARACTERIZATION THE SOWN AND WEED SPECIES BY MEANS OF PRINCIPAL COMPONENT ANALYSIS

  • Kawanabe, S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.4 no.3
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    • pp.245-250
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    • 1991
  • Analysis of the characteristics and the grouping of the species of sown and weeds in artificial pastures was studied applying the principal component analysis method. Presency and coverage of six sown species and fifteen weed species which occurred in pastures of under-grazing and optimumgrazing were subject to analysis. From field survey, species were divided into three groups: the group A included five species such as Festuca arundinacea, Lolium perenne and Dactylis glomerata, etc., the group B included eleven species such as Polygonum longisetum, Agrostis alba and Rumex obtusifolius, etc., and the group C included five species such as Miscanthus sinensis, Rubus palmatus and Artemisia princeps, etc. The group A species corresponded to good pasture conditions and management. On the contrary, the group C species occurred in poor pasture conditions with inadequate management. The group B species corresponded to intermediate pasture conditions and management. Interrelated pair species co-existing and species non-co-existing were discovered. Factor loading as negative for the group A species. positive for the group C species and positive but lower than the group C species for the group B species. From these results it is concluded that the principal component analysis seems to one of the useful tools for the analysis of characteristics of species and the diagnosis of sown pasture vegetation, although further studies are required to get more general information about species characteristics.

Identification and Characterization of Unreported Penicillium Species in Korea

  • Choi, Doo-Ho;Kim, Young-Guk;Lee, In-Seon;Hong, Seung-Bum;Kim, Jong-Guk
    • The Korean Journal of Mycology
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    • v.48 no.4
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    • pp.445-456
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    • 2020
  • Fungal species belonging to the genus Penicillium are indigenous to a wide range of natural environments. Since the first published reports detailing the discovery of Penicillium, new species have been identified in various countries, including Korea. We present here a full characterization of five species of Penicillium that were previously unreported in Korea. Based on the morphologic characteristics and sequences of genes encoding fungal ��-tubulin and calmodulin, we identified five Penicillium species, including P. hetheringtonii, P. sublectaticum, and P. jacksonii, which have been unrecorded in Korea, and confirming P. maximae and P. cremeogriseum, as the endophytic fungi isolated in Gyeongsang province, Korea. In this article, we provide detailed morphological descriptions of these fungal species.

Morphological and molecular characterization of the genus Coolia (Dinophyceae) from Bahía de La Paz, southwest Gulf of California

  • Morquecho, Lourdes;Garate-Lizarraga, Ismael;Gu, Haifeng
    • ALGAE
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    • v.37 no.3
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    • pp.185-204
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    • 2022
  • The genus Coolia A. Meunier 1919 has a global distribution and is a common member of epiphytic dinoflagellate assemblages in neritic ecosystems. Coolia monotis is the type species of the genus and was the only known species for 76 years. Over the past few decades, molecular characterization has unveiled two species complexes that group morphologically very similar species, so their limits are often unclear. To provide new knowledge on the biogeography and species composition of the genus Coolia, 16 strains were isolated from Bahía de La Paz, Gulf of California. The species were identified by applying morphological and molecular approaches. The morphometric characteristics of all isolated Coolia species were consistent with the original taxa descriptions. Phylogenetic analyses (large subunit [LSU] rDNA D1 / D2 and internal transcribed spacer [ITS] 1 / 5.8S / ITS2) revealed a species assemblage comprising Coolia malayensis, C. palmyrensis, C. tropicalis, and the C. cf. canariensis lineage. This is the first report of Coolia palmyrensis and C. cf. canariensis in Mexico and C. tropicalis in the Gulf of California. Our results strengthen the biogeographical understanding of these potentially harmful epiphytic dinoflagellate species.

Species characterization of animal by DNA hybridization (DNA hybridization을 이용한 축종특이성 구명)

  • Lee, Myoung-heon;Kim, Sang-keun;Jung, Gab-soo;Park, Jong-myoung
    • Korean Journal of Veterinary Research
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    • v.39 no.3
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    • pp.513-522
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    • 1999
  • DNA hybridization assay using probes prepared from liver was carried out to identify species characterization of the domestic animals. Gel electrophoresis showed that the target DNA extracted from raw muscle were 1kb and uniform pattern while fragments size of heated muscle were irregular. Hybridization was performed by adding 200ng/ml probe in hybridization solution and incubating for 12 hours at $68^{\circ}C$. To obtain good discrimination, applied washing buffer and washing step differently depending on the species. The probes of pig, horse and dog formed the specific hybrids with each target DNA respectively. Although cross reaction was detected in cattle, goat and sheep but signal intensity among these species made the discrimination possible each other. Such pattern was the same in the cases of chicken, turkey and duck. The hybridization pattern of heated muscle was similar to that of raw muscle in general, but the signal intensity was inferior to that of raw muscle. Species identification between closely related animal species, hybridized using the target DNA of such closely related animal species as a blocking agent, remarkable increase of discrimination from the evident decrease of non specific reaction compared with the control group. In addition, in the admixture where certain meat was included in the beef, pork, chicken meat, we could find whether any unjust meat was admixed or not. In this case, detection limit of certain meat in admixture was 1%.

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Discovery of novel Nodosilinea species (Cyanobacteria, Nodosilineales) isolated from terrestrial habitat in Ryukyus campus, Okinawa, Japan

  • Handung Nuryadi;Shimpei Sumimoto;Shoichiro Suda
    • ALGAE
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    • v.39 no.2
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    • pp.59-74
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    • 2024
  • Terrestrial cyanobacteria are extremely diverse. In urban areas, they can be found as black stains on the surface of building walls, stone monuments, or man-made structures. Many of the terrestrial cyanobacteria are still understudied. To expand knowledge of terrestrial cyanobacterial diversity, a polyphasic characterization was performed to identify 12 strains isolated from campus of University of the Ryukyus, Okinawa, Japan. Multigene phylogenetic analyses based on 16S rRNA gene and 16S-23S rRNA internal transcribed spacer (ITS) region showed that the isolated strains formed two independent subclades within Nodosilinea, and were distantly related to all described Nodosilinea species. The 16S-23S rRNA ITS secondary structures showed variations for D1-D1' and Box B domain, while V3 domain was almost identical among entire species of Nodosilinea, including the studied strains. In addition, a unique morphological character, i.e. forming nodule or spiral shape, was also observed in certain studied strains. According to polyphasic characterization, Nodosilinea coculeatus sp. nov. and Nodosilinea terrestrialis sp. nov., were proposed as two new species of terrestrial cyanobacteria from Okinawa.

Application of the Carabid Beetles as Ecological Indicator Species for Wetland Characterization and Monitoring in Busan and Gyeongsangnam-do (습지지표종으로서 딱정벌레류를 이용한 부산, 경남 주요 습지의 특성 및 변화 관찰)

  • Do, Yu-Do;Moon, Tae-Young;Joo, Gea-Jae
    • Korean Journal of Environment and Ecology
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    • v.21 no.1
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    • pp.22-29
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    • 2007
  • Investigation of carabid beetles as on ecological indicator species for wetland characterization and monitoring was conducted in three types of wetlands such as emergent wetland, forested wetland, and estuary, During the investigation period, twenty-eight species belonging to twenty-two genera and three families(Carabidae, Harpalidae, Brachinidae) were identified. The diversity of carabid beetles at riverine wetland such as Woopo (H'=1.18) and Hwapo-neup (H'=1.08) were higher than in the forested wetland (H'=1.03) and estuarine (H'=0.91). Species compositions in each wetland were significantly different(${\chi}^2=1716.8$, P<0.01). Riverine wetlands differed significantly from the forested wetland. Indicator species for the wetland chose with indicator species analysis were reacted sensitively on the parameter such as soil composition, moisture of soil, and environmental change. Thus, it was consequently suggested that these indicator species may be applied for wetland characterization and monitoring of the wetland ecosystem.

Species characterization of animal by muscle composition analysis III. The contents of minerals in muscle from various species (근육조성에 따른 축종특이성 구명 III. 축종별 근육중 무기물 함량)

  • Lee, Myoung-heon;Kim, Sang-keun
    • Korean Journal of Veterinary Research
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    • v.39 no.3
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    • pp.501-512
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    • 1999
  • We analyzed the contents of 12 types of minerals such as calcium in muscle from various species. Thereafter we observed changes of the concentrations according to age, part and sex in major domestic animals. The concentrations of calcium, iron, sodium, potassium, magnesium and zinc were high respectively whilst the content of cobalt, chromium, copper, manganese, molybdenum and nickel were low respectively in the muscle. The concentration of calcium was high in duck and dog but low in pig and horse. Also high level of sodium content was detected in dog and the content of potassium, iron showed high level in horse compared with the content in other animals. In 6 types of microminerals as cobalt, the level of muscle were no more than 1 ppm showing very low content in all animal, but $2.99{\pm}0.85$ppm of copper in duck was an exceptional case. According to the age some species showed small range of variation centering on macrominerals and there was no remarkable change in microminerals. Distribution of minerals was different according to the part and the variation was very diverse compared with other factors such as age and sex. Additionally, the content of minerals in muscle was higher in female than in male chicken and duck. In conclusion, the difference of the content of minerals according to the species was mainly focused on macrominerals.

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Aspergillus caninus (Syn: Phialosimplex caninus): a New Isolate from Field Soils in Korea

  • Adhikari, Mahesh;Gurung, Sun Kumar;Kim, Sang Woo;Lee, Hyun Goo;Ju, Han Jun;Gwon, Byeong Heon;Kosol, San;Bazie, Setu;Lee, Hyang Burm;Lee, Youn Su
    • The Korean Journal of Mycology
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    • v.46 no.4
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    • pp.383-392
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    • 2018
  • During the study of indigenous fungal communities in soil samples collected from various field soils in Sancheong, Gyeongsangnam-do, Korea in 2017, several species of Aspergillus were discovered. Aspergillus caninus (KNU17-7) was isolated, identified, and described based on the results from macro and micro morphological characteristics and molecular characterization. Morphologically, it was identified using five different growth media: potato dextrose agar, oatmeal agar, yeast extract sucrose agar, czapek yeast extract agar, and malt extract agar. For the molecular identification, sequencing of internal transcribed spacer, ${\beta}-tubulin$, and calmodulin genes was performed. Based on this characterization, our study isolate was identified as Aspergillus caninus. This fungal species has not been officially reported in Korea before, and we report here with its morphological and molecular phylogenetic characterization.

Single-Particle Characterization of Municipal Solid Waste (MSW) Ash Particles Using Low- Z Particle Electron Probe X-ray Microanalysis (단일입자분석(Low-Z Particle Electron Probe X-ray Microanalysis)을 이용한 도시 소각재 입자의 특성분석)

  • Hwang Hee Jin;Kim Hye Kyeong;Ro Chul-Un
    • Journal of Korean Society for Atmospheric Environment
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    • v.21 no.3
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    • pp.367-375
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    • 2005
  • Low-Z particle Electron Probe X-ray Microanalysis was applied to characterize MSW fly- and bottom -ash particle samples originated from two municipal incinerators (denoted as A and B) in Korea. According to their chemical composition, many distinctive particle types were identified. In A fly ash, the major chemical species are carbon-rich, aluminosilicates and many particles are composed of as a mixture of $ CaCO_3$ and other chemical species such as $CaSO_4$ or $CaCl_2$. For B fly ash, Fe, iron oxide, NaCl and NaCl-containing particles are the most abundant. In bottom ash, A and B were composed of similar chemical species such as carbon-rich, Fe, iron oxide, $CaCO_3$, and aluminosilicates. It was demonstrated that the single-particle characterization using this low-Z particle EPMA technique provided detailed information on various types of chemical species in the MSW ash samples. In addition, the technique has advantage over conventional analytical techniques in the point that both crystalline and glass-like ash particles can be analyzed at the same time.