• 폴리머
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• 제35권6호
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• pp.513-519
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• 2011

침투 가능한 구형 모델 유체의 충돌 특성을 고찰하고자 분자 동력학 방법을 이용한 전산 모사를 수행하였다. 이로부터 다양한 범위의 입자 충전 분율 ${\phi}$ 및 척력적 에너지 ${\varepsilon}^*$ 조건에 대한 충돌 빈도수, 평균 자유 행로, 강체형 반사 충돌각 및 연체형 침투 충돌각의 분포도, 유효 충전 분율 등을 계산하였다. 낮은 척력적 에너지 조건에서는 연체형 충돌이 주된 특성이나, 반면 높은 척력적 에너지 조건에서는 강체형 충돌이 주된 요인이었다. 매우 흥미롭게도, 전체 충돌 빈도수에 대한 연체형 충돌비(또는, 강체형 충돌비)는 정준 앙상블의 몬테카를로 전산 모사에서 받아들임 확률(또는, 되돌림 확률)로 표시되는 볼쯔만 인자와 직접적으로 관계되었다. 이와 같은 거동 입자들의 동적 충돌 특성들은 ${\varepsilon}^*{\geqq}3.0$ 및 ${\phi}{\geqq}0.7$ 범위의 높은 척력적 에너지 및 높은 충전 분율 조건에서 제한적이었으며, 이는 침투성 구형 모델에서 나타나는 클러스터 형성 구조를 함축하고 있다.

• Mass Spectrometry Letters
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• 제12권4호
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• pp.131-136
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• 2021

Collision-induced dissociation of peptides involves a series of proton-transfer reactions in the activated peptide. To describe the kinetics of energy-variable dissociation, we considered the heat capacity of the peptide and the Marcus-theory-type proton-transfer rate. The peptide ion was activated to the high internal energy states by collision with a target gas in the collision cell. The mobile proton in the activated peptide then migrated from the most stable site to the amide oxygen and subsequently to the amide nitrogen (N-protonated) of the peptide bond to be broken. The N-protonated intermediate proceeded to the product-like complex that dissociated to products. Previous studies have suggested that the proton-transfer equilibria in the activated peptide affect the dissociation kinetics. To take the extent of collisional activation into account, we assumed a soft-sphere collision model, where the relative collision energy was fully available to the internal excitation of a collision complex. In addition, we employed a Marcus-theory-type rate equation to account for the proton-transfer equilibria. Herein, we present results from the integrated thermochemical approach using a tryptic peptide of ubiquitin.

• Journal of Information Processing Systems
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• 제8권4호
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• pp.713-720
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• 2012

Unlike FEM (Finite Element Method), which provides an accurate deformation of soft objects, FFD (Free Form Deformation) based methods have been widely used for a quick and responsive representation of deformable objects in real-time applications such as computer games, animations, or simulations. The FFD-AABB (Free Form Deformation Axis Aligned Bounding Box) algorithm was also suggested to address the collision handling problems between deformable objects at an interactive rate. This paper proposes an enhanced FFD-AABB algorithm to improve the frame rate of simulation by adding the bounding sphere based collision test between 3D deformable objects. We provide a comparative analysis with previous methods and the result of proposed method shows about an 85% performance improvement.