• Title/Summary/Keyword: single cell

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Single-cell PCR on protargol-impregnated euplotid ciliates: a combined approach of morphological and molecular taxonomy

  • Kim, Se-Joo;Choi, Joong-Ki;Ryu, Seong-Ho;Min, Gi-Sik
    • Animal cells and systems
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    • v.15 no.3
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    • pp.251-258
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    • 2011
  • Ciliates are considered one of the most diverse protozoa and play significant roles in ecology. For successful taxonomic study of these microscopic eukaryotes, a staining procedure is necessary, due mainly to intrinsic difficulties in recognizing characteristics from living cells. Although molecular taxonomy has been used to resolve the ambiguities associated with traditional morphology-based taxonomy, extraction of genomic DNA from stained ciliate cells is not available yet. In the present study, we describe a method to extract genomic DNA from a single protargol-impregnated euplotid cell. By using $HgCl_2$ as a fixative and modulating the exposure time of bleach solution in the protargol impregnation, high-quality genomic DNA can successfully be extracted from a stained single cell with minimal loss of morphological integrity. This technique will contribute to the effectiveness of combined approaches of molecular and morphological taxonomy from single ciliate cells.

Development of PCR based approach to detect potential mosaicism in porcine embryos

  • Cho, Jongki;Uh, Kyungjun;Ryu, Junghyun;Fang, Xun;Bang, Seonggyu;Lee, Kiho
    • Journal of Animal Reproduction and Biotechnology
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    • v.35 no.4
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    • pp.323-328
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    • 2020
  • Direct injection of genome editing tools such as CRISPR/Cas9 system into developing embryos has been widely used to generate genetically engineered pigs. The approach allows us to produce pigs carrying targeted modifications at high efficiency without having to apply somatic cell nuclear transfer. However, the targeted modifications during embryogenesis often result in mosaicism, which causes issues in phenotyping founder animals and establishing a group of pigs carrying intended modifications. This study was aimed to establish a genomic PCR and sequencing system of a single blastomere in the four-cell embryos to detect potential mosaicism. We performed genomic PCR in four individual blastomeres from four-cell embryos. We successfully amplified target genomic region from single blastomeres of 4-cell stage embryo by PCR. Sanger sequencing of the PCR amplicons obtained from the blastomeres suggested that PCR-based genotyping of single blastomere was a feasible method to determine mutation type generated by genome editing technology such as CRISPR/Cas9 in early stage embryos. In conclusion, we successfully genotyped single blastomeres in a single 4-cell stage embryo to detect potential mosaicism in porcine embryos. Our approach offers a simple platform that can be used to screen the prevalence of mosaicism from designed CRISPR/Cas9 systems.

Novel transflective liquid crystal displays having a single cell gap and a single LC mode combined with an inner-patterned retarder

  • Lee, Sin-Doo;Lim, Yong-Woon;Kim, Jin-Yool;Kim, Dong-Woo
    • 한국정보디스플레이학회:학술대회논문집
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    • 2006.08a
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    • pp.1519-1524
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    • 2006
  • We report on new transflective liquid crystal displays (LCDs) having a single cell gap and a single LC mode combined with an inner-patterned retarder. In a vertically or planarly aligned configuration the brightness is greatly improved and a single driving scheme can be employed.

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Basal cell carcinoma and squamous cell carcinoma in a single tumor in the anterior auricular area

  • Lee, Il Seok;Hong, In Pyo;Lee, Hye Kyeong
    • Archives of Craniofacial Surgery
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    • v.21 no.4
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    • pp.257-260
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    • 2020
  • The concurrence of basal cell carcinoma (BCC) and squamous cell carcinoma (SCC) in a single tumor is rarely encountered. We report a case of BCC and SCC in a single tumor in the anterior auricular area. A 70-year-old woman had been diagnosed with BCC by a punch biopsy performed at a dermatology clinic. We performed wide excision of the tumor with an ulcer in the anterior auricular area. Analysis of the biopsy specimen revealed the presence of both BCC and SCC in the tumor. This case illustrates that it is necessary to establish a precise diagnosis and formulate appropriate surgical and treatment plans considering the possibility that two carcinomas may coexist, although the possibility is low in patients with skin cancer.

Development of a Three-Dimensional Chemotaxis Model for a Single Bacterium (3 차원 모델을 통한 단일 박테리아의 주화성 연구)

  • Song, Ji-Hwan;Kim, Dong-Choul
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.33 no.1
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    • pp.56-63
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    • 2009
  • Cell migration is one of the essential mechanisms responsible for complex biological processes. Intensive researches have begun to elucidate the mechanisms and search intriguing conditions for efficient control of cell migration. One general mechanism that is widely applicable for cells including Escherichia coli, amoebae and endothelial cell is chemotaxis. The single cell study for bacterial chemotaxis has an advantage over studies with the population of cells in providing a clearer observation of cell migration, which leads to more accurate assessments of chemotaxis. In this paper, we propose a three-dimensional model considering a single bacterium to study its chemotaxis. The semi-implicit Fourier spectral method is applied for high efficiency and numerical stability. The simulation results reveal rich dynamics of cell migration and provide quantitative assessments of bacterial chemotaxis with various chemoattractant gradient fields.

Bio-functionalization of the Single Layer Graphene for Detecting the Cancer Cell

  • Oh, Hyung Sik;Park, Wanjun
    • Proceedings of the Korean Vacuum Society Conference
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    • 2014.02a
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    • pp.429.1-429.1
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    • 2014
  • We present a method of surface functionalization of a single layer graphene for linking and detecting MDA-MB-231 human breast cancer cell. The methodology is done by utilizing 1-pyrenebutanoic acid and succinimidyl ester for immobiling CD44 antibodies. This work shows that the single layer graphene is an efficient fixing substance to capture the MDA-MB-231 human breast cancer cell, selectively. The immobilization method of the cancer cell on the graphene layer will be an effective cell counting system. Moreover usage of the linking with non-covalent bonding is expected to develope a sensor scheme of electrical cell-detecting diagnosis system.

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Integration of Single-Cell RNA-Seq Datasets: A Review of Computational Methods

  • Yeonjae Ryu;Geun Hee Han;Eunsoo Jung;Daehee Hwang
    • Molecules and Cells
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    • v.46 no.2
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    • pp.106-119
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    • 2023
  • With the increased number of single-cell RNA sequencing (scRNA-seq) datasets in public repositories, integrative analysis of multiple scRNA-seq datasets has become commonplace. Batch effects among different datasets are inevitable because of differences in cell isolation and handling protocols, library preparation technology, and sequencing platforms. To remove these batch effects for effective integration of multiple scRNA-seq datasets, a number of methodologies have been developed based on diverse concepts and approaches. These methods have proven useful for examining whether cellular features, such as cell subpopulations and marker genes, identified from a certain dataset, are consistently present, or whether their condition-dependent variations, such as increases in cell subpopulations in particular disease-related conditions, are consistently observed in different datasets generated under similar or distinct conditions. In this review, we summarize the concepts and approaches of the integration methods and their pros and cons as has been reported in previous literature.

A Disposable BioChip for Single Cell Manipulation

  • Yoon, Euisik
    • Proceedings of the Korean Society Of Semiconductor Equipment Technology
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    • 2004.10a
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    • pp.1-15
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    • 2004
  • o Various microfluidic components including mixromixers and micropumps have been developed for disposable biochip applications. o Single cell capturing, positioning and nanoliter drug injection chip has been demostrated. o Multi-channel, two-dimensional micro-well array has been fabricated and cell capturing and specific reagent injection have been performed.

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Evaluation of Driving Properties by Cell-gap Difference of Single Particle-Microcapsule Type Electronic Paper (싱글입자-마이크로캡슐형 전자종이의 셀갭 차이에 따른 구동 특성평가)

  • Song, Jin-Seok;Kim, Young-Cho
    • Journal of the Korean Institute of Electrical and Electronic Material Engineers
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    • v.28 no.8
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    • pp.518-523
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    • 2015
  • We fabricate a single particle-microcapsule type electronic paper using electrophoresis, which is different with a reported dual particle-microcapsule type and of which electro-optical researches are not reported. So we analyzed a basic properties, such as reflectivity, response time, and driving voltage. Our display panels having various cell-gaps of $30{\mu}m$, $34{\mu}m$, $38{\mu}m$, $42{\mu}m$, and $46{\mu}m$ are inspected. As a results, a driving voltage is defined to 10 V and desirable cell-gap is $30{\mu}m$ or $34{\mu}m$. Considering a mechanical strength, the optimum cell-gap is $34{\mu}m$ for the single particle type electronic paper.

A Soft Switching Scheme using a Single Resonant Inductor in Interleaved Boost Converter (Interleaved 부스트 컨버터에서 단일 공진 인덕터를 이용한 소프트 스위칭 기법)

  • Park, Nam-Ju;Lee, Dong-Myung;Ha, Dong-Hyun;Hyun, Dong-Seok
    • The Transactions of the Korean Institute of Power Electronics
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    • v.13 no.4
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    • pp.263-269
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    • 2008
  • In this paper, an interleaved boost converter (IBC) with ZVT cell using a single resonant inductor in continuous conduction mode (CCM) is proposed. The IBC with the proposed ZVT cell has advantages such as a simple circuit, reduced size and low cost by using a single resonant inductor. It is more suitable for high power applications. The proposed ZVT cell circuit and principles for the IBC are explained in detail. The validity of the IBC with proposed ZVT cell is verified through experimental results.