• Title/Summary/Keyword: signal database

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Identification of Genes Involved in Primordial-primary Follicle Transition by Suppression Subtractive Hybridization

  • Park, Chang-Eun;Yoon, Se-Jin;Jeon, Eun-Hyun;Kim, Young-Hoon;Lee, Sook-Hwan;Lee, Kyung-Ah
    • Proceedings of the Korean Society of Embryo Transfer Conference
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    • 2002.11a
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    • pp.98-98
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    • 2002
  • Recruitment of primordial follicles(PMF) is crucial for female fertility. however, factors and mechanisms that regulate this process is poorly understood. The present study was conducted to obtain an inclusive view of the gene expression and to identify novel factors and their pathways of regulating PMF arrest and/or growth initiation. Ovaries from one-day neonatal(consists of oocyte and PMF) and five-day old(consists of PMF and primary follicles, PRIF) mice were collected, either total RNA or mRNA was isolated, and suppression subtractive hybridization(SSH) was used to isolate and clone genes that differentially expressed in day 1 and day 5 ovaries. Confirmation that some of these genes are differentially expressed in PMF and/or in PRIF was accomplished by using laser captured microdissection(LCM), RT-PCR. in situ hybridization(ISH) and/or immunohistochemistry(IHC). In toto, 357 clones were sequenced and analyzed by BLAST and RIKEN program. Sequences of 330 clones significantly matched database entries while 27 clones were novel. Forty-two and 47 different genes were identified as differentially expressed in day 1 and day 5 ovaries, respectively, while 7 genes were expressed in both stages of ovaries. Day 5-subtracted library included several genes known as markers far growing follicles, such as ZP2, MATER, and fetuin. Among the genes with assigned functions, 23.8% was associated with cell cycle/apoptosis regulation, 7.1% with cellular structure, 11.9% with metabolism, 26.2% with signal transduction, and 31.0% with gene/protein expression in day 1; while 10.6%, 17.0%, 23.5%, 25.5%, and 23.4% in day 5, respectively. Genes such as GDF-8, Lats2, Septin2, and Weel were the highly expressed genes in PMF, while HSP84, Laminin2, MATER, MTi7, PTP, and Wrn were highly expressed genes in PRIF. We have successfully discovered list of genes expressed in day 1 and day 5 ovaries and confirmed that some of them are differentially expressed in PMF and/or PRIF. Gene expression profile from the present study would provide insight for the future study on the mechanism(s) involved in primordial-primary follicular transition. This work was Supported by Korean Health 21 RND Project, Ministry of Health and Welfare, Korea (01-PJ10-PG6-01GN13-0002).

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Isolated Word Recognition Using k-clustering Subspace Method and Discriminant Common Vector (k-clustering 부공간 기법과 판별 공통벡터를 이용한 고립단어 인식)

  • Nam, Myung-Woo
    • Journal of the Institute of Electronics Engineers of Korea TE
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    • v.42 no.1
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    • pp.13-20
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    • 2005
  • In this paper, I recognized Korean isolated words using CVEM which is suggested by M. Bilginer et al. CVEM is an algorithm which is easy to extract the common properties from training voice signals and also doesn't need complex calculation. In addition CVEM shows high accuracy in recognition results. But, CVEM has couple of problems which are impossible to use for many training voices and no discriminant information among extracted common vectors. To get the optimal common vectors from certain voice classes, various voices should be used for training. But CVEM is impossible to get continuous high accuracy in recognition because CVEM has a limitation to use many training voices and the absence of discriminant information among common vectors can be the source of critical errors. To solve above problems and improve recognition rate, k-clustering subspace method and DCVEM suggested. And did various experiments using voice signal database made by ETRI to prove the validity of suggested methods. The result of experiments shows improvements in performance. And with proposed methods, all the CVEM problems can be solved with out calculation problem.

P Wave Detection Algorithm through Adaptive Threshold and QRS Peak Variability (적응형 문턱치와 QRS피크 변화에 따른 P파 검출 알고리즘)

  • Cho, Ik-sung;Kim, Joo-Man;Lee, Wan-Jik;Kwon, Hyeog-soong
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.20 no.8
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    • pp.1587-1595
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    • 2016
  • P wave is cardiac parameters that represent the electrical and physiological characteristics, it is very important to diagnose atrial arrhythmia. However, It is very difficult to detect because of the small size compared to R wave and the various morphology. Several methods for detecting P wave has been proposed, such as frequency analysis and non-linear approach. However, in the case of conduction abnormality such as AV block or atrial arrhythmia, detection accuracy is at the lower level. We propose P wave detection algorithm through adaptive threshold and QRS peak variability. For this purpose, we detected Q, R, S wave from noise-free ECG signal through the preprocessing method. And then we classified three pattern of P wave by peak variability and detected adaptive window and threshold. The performance of P wave detection is evaluated by using 48 record of MIT-BIH arrhythmia database. The achieved scores indicate the average detection rate of 92.60%.

PVC Classification based on QRS Pattern using QS Interval and R Wave Amplitude (QRS 패턴에 의한 QS 간격과 R파의 진폭을 이용한 조기심실수축 분류)

  • Cho, Ik-Sung;Kwon, Hyeog-Soong
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.18 no.4
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    • pp.825-832
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    • 2014
  • Previous works for detecting arrhythmia have mostly used nonlinear method such as artificial neural network, fuzzy theory, support vector machine to increase classification accuracy. Most methods require accurate detection of P-QRS-T point, higher computational cost and larger processing time. Even if some methods have the advantage in low complexity, but they generally suffer form low sensitivity. Also, it is difficult to detect PVC accurately because of the various QRS pattern by person's individual difference. Therefore it is necessary to design an efficient algorithm that classifies PVC based on QRS pattern in realtime and decreases computational cost by extracting minimal feature. In this paper, we propose PVC classification based on QRS pattern using QS interval and R wave amplitude. For this purpose, we detected R wave, RR interval, QRS pattern from noise-free ECG signal through the preprocessing method. Also, we classified PVC in realtime through QS interval and R wave amplitude. The performance of R wave detection, PVC classification is evaluated by using 9 record of MIT-BIH arrhythmia database that included over 30 PVC. The achieved scores indicate the average of 99.02% in R wave detection and the rate of 93.72% in PVC classification.

A Secure Mobile Message Authentication Over VANET (VANET 상에서의 이동성을 고려한 안전한 메시지 인증기법)

  • Seo, Hwa-Jeong;Kim, Ho-Won
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.15 no.5
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    • pp.1087-1096
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    • 2011
  • Vehicular Ad Hoc Network(VANET) using wireless network is offering the communications between vehicle and vehicle(V2V) or vehicle and infrastructure(V2I). VANET is being actively researched from industry field and university because of the rapid developments of the industry and vehicular automation. Information, collected from VANET, of velocity, acceleration, condition of road and environments provides various services related with safe drive to the drivers, so security over network is the inevitable factor. For the secure message authentication, a number of authentication proposals have been proposed. Among of them, a scheme, proposed by Jung, applying database search algorithm, Bloom filter, to RAISE scheme, is efficient authentication algorithm in a dense space. However, k-anonymity used for obtaining the accurate vehicular identification in the paper has a weak point. Whenever requesting the righteous identification, all hash value of messages are calculated. For this reason, as the number of car increases, a amount of hash operation increases exponentially. Moreover the paper does not provide a complete key exchange algorithm while the hand-over operation. In this paper, we use a Received Signal Strength Indicator(RSSI) based velocity and distance estimation algorithm to localize the identification and provide the secure and efficient algorithm in which the problem of hand-over algorithm is corrected.

Optimal Value Detection of Irregular RR Interval for Atrial Fibrillation Classification based on Linear Analysis (선형분석 기반의 심방세동 분류를 위한 불규칙 RR 간격의 최적값 검출)

  • Cho, Ik-Sung;Jeong, Jong-Hyeog;Cho, Young Chang;Kwon, Hyeog-Soong
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.18 no.10
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    • pp.2551-2561
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    • 2014
  • Several algorithms have been developed to detect AFIB(Atrial Fibrillation) which either rely on the linear and frequency analysis. But they are more complex than time time domain algorithm and difficult to get the consistent rule of irregular RR interval rhythm. In this study, we propose algorithm for optimal value detection of irregular RR interval for AFIB classification based on linear analysis. For this purpose, we detected R wave, RR interval, from noise-free ECG signal through the preprocessing process and subtractive operation method. Also, we set scope for segment length and detected optimal value and then classified AFIB in realtime through liniar analysis such as absolute deviation and absolute difference. The performance of proposed algorithm for AFIB classification is evaluated by using MIT-BIH arrhythmia and AFIB database. The optimal value indicate ${\alpha}=0.75$, ${\beta}=1.4$, ${\gamma}=300ms$ in AFIB classification.

Proteome Profiling of Murine Macrophages Treated with the Anthrax Lethal Toxin (탄저 치사독소 처리에 의한 생쥐 대식세포의 단백질체 발현 양상 분석)

  • Jung Kyoung-Hwa;Seo Giw-Moon;Kim Sung-Joo;Kim Ji-Chon;Oh Seon-Mi;Oh Kwang-Geun;Chai Young-Gyu
    • Korean Journal of Microbiology
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    • v.41 no.4
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    • pp.262-268
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    • 2005
  • Intoxication of murine macrophages (RAW 264.7) with the anthrax lethal toxin (LeTx 100 ng/ml) results in profound alterations in the host cell gene expression. The role of LeTx in mediating these effects is unknown, largely due to the difficulty in identifying and assigning function to individual proteins. In this study, we have used two-dimensional polyacrylamide gel electrophoresis to analyze the protein profile of murine macrophages treated with the LeTx, and have coupled this to protein identification using MALDI-TOF mass spectrometry. Interpretation of the peptide mass fingerprint data has relied primarily on the ProFound database. Among the differentially expressed spots, cleaved mitogen-activated protein kinase kinase (Mek1) and glucose-6-phosphate dehydrogenase were increased in the LeTx treated macrophages. Mek1 acts as a negative element in the signal transduction pathway, and G6PD plays the role for the protection of the cells from the hyper-production of active oxygen. Our results suggest that this proteomic approach is a useful tool to study protein expression in intoxicated macrophages and will contribute to the identification of a putative substrate for LeTx.

Online Signature Verification by Visualization of Dynamic Characteristics using New Pattern Transform Technique (동적 특성의 시각화를 수행하는 새로운 패턴변환 기법에 의한 온라인 서명인식 기술)

  • Chi Suyoung;Lee Jaeyeon;Oh Weongeun;Kim Changhun
    • Journal of KIISE:Software and Applications
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    • v.32 no.7
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    • pp.663-673
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    • 2005
  • An analysis model for the dynamics information of two-dimensional time-series patterns is described. In the proposed model, two novel transforms that visualize the dynamic characteristics are proposed. The first transform, referred to as speed equalization, reproduces a time-series pattern assuming a constant linear velocity to effectively model the temporal characteristics of the signing process. The second transform, referred to as velocity transform, maps the signal onto a horizontal vs. vertical velocity plane where the variation oi the velocities over time is represented as a visible shape. With the transforms, the dynamic characteristics in the original signing process are reflected in the shape of the transformed patterns. An analysis in the context of these shapes then naturally results in an effective analysis of the dynamic characteristics. The proposed transform technique is applied to an online signature verification problem for evaluation. Experimenting on a large signature database, the performance evaluated in EER(Equal Error Rate) was improved to 1.17$\%$ compared to 1.93$\%$ of the traditional signature verification algorithm in which no transformed patterns are utilized. In the case of skilled forgery experiments, the improvement was more outstanding; it was demonstrated that the parameter set extracted from the transformed patterns was more discriminative in rejecting forgeries

A Study on Tram Traffic Accidents Characteristics and Safety Measures (트램 교통사고 특성 및 안전대책에 관한 연구)

  • Lee, Sooil;Myung, Myohee;Kim, Taeho
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.39 no.4
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    • pp.505-512
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    • 2019
  • This study is a basic study to prepare safety measures for the tram that is being introduced into Korea by reviewing accident analysis and accident compensation system of the tram. Analysis of accident characteristics of the tram was analyzed based on overseas data. Five years after the inauguration of the tram, accidents were halved and stabilized. Deaths accounted for 0.5 % of all casualties, most accidents were minor. Accidents with other mean transportation were high 84.1 %, among them accidents with passenger cars was found to be highest. The frequent points of accidents were analyzed as intersections and tram stop, and measures for pedestrian accidents were found to be important. Those are proposed safety measures through analyzing tram accident characteristics: Monitoring accidents which occur within five years of its inauguration, developing accident database input system, installation of fences for preventing people from jaywalking, operating traffic signal for preventing people from jaywalking through connection of pedestrian signals and tram signals, clamping down on illegal U-turn cars and jaywalking pedestrian, Also, those are proposed accident treatment measures based on general driver receptively and overseas data: property damage liability coverage (PI) of car insurance, comparative negligence when the accident occurs between car and tram.

Transcriptional regulation of chicken leukocyte cell-derived chemotaxin 2 in response to toll-like receptor 3 stimulation

  • Lee, Seokhyun;Lee, Ra Ham;Kim, Sung-Jo;Lee, Hak-Kyo;Na, Chong-Sam;Song, Ki-Duk
    • Asian-Australasian Journal of Animal Sciences
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    • v.32 no.12
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    • pp.1942-1949
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    • 2019
  • Objective: Leukocyte cell-derived chemotaxin 2 (LECT2) is associated with several physiological processes including inflammation, tumorigenesis, and natural killer T cell generation. Chicken LECT2 (chLECT2) gene was originally identified as one of the differentially expressed genes in chicken kidney tissue, where the chickens were fed with different calcium doses. In this study, the molecular characteristics and gene expression of chLECT2 were analyzed under the stimulation of toll-like receptor 3 (TLR3) ligand to understand the involvement of chLECT2 expression in chicken metabolic disorders. Methods: Amino acid sequence of LECT2 proteins from various species including fowl, fish, and mammal were retrieved from the Ensembl database and subjected to Insilco analyses. In addition, the time- and dose-dependent expression of chLECT2 was examined in DF-1 cells which were stimulated with polyinosinic:polycytidylic acid (poly [I:C]), a TLR3 ligand. Further, to explore the transcription factors required for the transcription of chLECT2, DF-1 cells were treated with poly (I:C) in the presence or absence of the nuclear factor ${\kappa}B$ ($NF{\kappa}B$) and activated protein 1 (AP-1) inhibitors. Results: The amino acid sequence prediction of chLECT2 protein revealed that along with duck LECT2 (duLECT2), it has unique signal peptide different from other vertebrate orthologs, and only chLECT2 and duLECT2 have an additional 157 and 161 amino acids on their carboxyl terminus, respectively. Phylogenetic analysis suggested that chLECT2 is evolved from a common ancestor along with the actinopterygii hence, more closely related than to the mammals. Our quantitative polymerase chain reaction results showed that, the expression of chLECT2 was up-regulated significantly in DF-1 cells under the stimulation of poly (I:C) (p<0.05). However, in the presence of $NF{\kappa}B$ or AP-1 inhibitors, the expression of chLECT2 is suppressed suggesting that both $NF{\kappa}B$ and AP-1 transcription factors are required for the induction of chLECT2 expression. Conclusion: The present results suggest that chLECT2 gene might be a target gene of TLR3 signaling. For the future, the expression pattern or molecular mechanism of chLECT2 under stimulation of other innate immune receptors shall be studied. The protein function of chLECT2 will be more clearly understood if further investigation about the mechanism of LECT2 in TLR pathways is conducted.