• Title/Summary/Keyword: sequence-based method

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Mining Maximal Frequent Contiguous Sequences in Biological Data Sequences

  • Kang, Tae-Ho;Yoo, Jae-Soo;Kim, Hak-Yong;Lee, Byoung-Yup
    • International Journal of Contents
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    • v.3 no.2
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    • pp.18-24
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    • 2007
  • Biological sequences such as DNA and amino acid sequences typically contain a large number of items. They have contiguous sequences that ordinarily consist of more than hundreds of frequent items. In biological sequences analysis(BSA), a frequent contiguous sequence search is one of the most important operations. Many studies have been done for mining sequential patterns efficiently. Most of the existing methods for mining sequential patterns are based on the Apriori algorithm. In particular, the prefixSpan algorithm is one of the most efficient sequential pattern mining schemes based on the Apriori algorithm. However, since the algorithm expands the sequential patterns from frequent patterns with length-1, it is not suitable for biological datasets with long frequent contiguous sequences. In recent years, the MacosVSpan algorithm was proposed based on the idea of the prefixSpan algorithm to significantly reduce its recursive process. However, the algorithm is still inefficient for mining frequent contiguous sequences from long biological data sequences. In this paper, we propose an efficient method to mine maximal frequent contiguous sequences in large biological data sequences by constructing the spanning tree with a fixed length. To verify the superiority of the proposed method, we perform experiments in various environments. The experiments show that the proposed method is much more efficient than MacosVSpan in terms of retrieval performance.

Genetic Algorithm based B-spline Fitting for Contour Extraction from a Sequence of Images (연속 영상에서의 경계추출을 위한 유전자 알고리즘 기반의 B-spline 적합)

  • Heo Hoon;Lee JeongHeon;Chae OkSam
    • Journal of KIISE:Software and Applications
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    • v.32 no.5
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    • pp.357-365
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    • 2005
  • We present a B-spline fitting method based on genetic algorithm for the extraction of object contours from the complex image sequence, where objects with similar shape and intensity are adjacent each other. The proposed algorithm solves common malfitting problem of the existing B-spline fitting methods including snakes. Classical snake algorithms have not been successful in such an image sequence due to the difficulty in initialization and existence of multiple extrema. We propose a B-spline fitting method using a genetic algorithm with a new initial population generation and fitting function, that are designed to take advantage of the contour of the previous slice. The test results show that the proposed method extracts contour of individual object successfully from the complex image sequence. We validate the algorithm by false-positive/negative errors and relative amounts of agreements.

An Anomalous Sequence Detection Method Based on An Extended LSTM Autoencoder (확장된 LSTM 오토인코더 기반 이상 시퀀스 탐지 기법)

  • Lee, Jooyeon;Lee, Ki Yong
    • The Journal of Society for e-Business Studies
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    • v.26 no.1
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    • pp.127-140
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    • 2021
  • Recently, sequence data containing time information, such as sensor measurement data and purchase history, has been generated in various applications. So far, many methods for finding sequences that are significantly different from other sequences among given sequences have been proposed. However, most of them have a limitation that they consider only the order of elements in the sequences. Therefore, in this paper, we propose a new anomalous sequence detection method that considers both the order of elements and the time interval between elements. The proposed method uses an extended LSTM autoencoder model, which has an additional layer that converts a sequence into a form that can help effectively learn both the order of elements and the time interval between elements. The proposed method learns the features of the given sequences with the extended LSTM autoencoder model, and then detects sequences that the model does not reconstruct well as anomalous sequences. Using experiments on synthetic data that contains both normal and anomalous sequences, we show that the proposed method achieves an accuracy close to 100% compared to the method that uses only the traditional LSTM autoencoder.

Safety analysis of marine nuclear reactor in severe accident with dynamic fault trees based on cut sequence method

  • Fang Zhao ;Shuliang Zou ;Shoulong Xu ;Junlong Wang;Tao Xu;Dewen Tang
    • Nuclear Engineering and Technology
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    • v.54 no.12
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    • pp.4560-4570
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    • 2022
  • Dynamic fault tree (DFT) and its related research methods have received extensive attention in safety analysis and reliability engineering. DFT can perform reliability modelling for systems with sequential correlation, resource sharing, and cold and hot spare parts. A technical modelling method of DFT is proposed for modelling ship collision accidents and loss-of-coolant accidents (LOCAs). Qualitative and quantitative analyses of DFT were carried out using the cutting sequence (CS)/extended cutting sequence (ECS) method. The results show nine types of dynamic fault failure modes in ship collision accidents, describing the fault propagation process of a dynamic system and reflect the dynamic changes of the entire accident system. The probability of a ship collision accident is 2.378 × 10-9 by using CS. This failure mode cannot be expressed by a combination of basic events within the same event frame after an LOCA occurs in a marine nuclear reactor because the system contains warm spare parts. Therefore, the probability of losing reactor control was calculated as 8.125 × 10-6 using the ECS. Compared with CS, ECS is more efficient considering expression and processing capabilities, and has a significant advantage considering cost.

A Simple Algorithm to Predict Committed Bit

  • Kim, Hyoung-Joong
    • Journal of The Institute of Information and Telecommunication Facilities Engineering
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    • v.2 no.2
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    • pp.32-35
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    • 2003
  • This paper presents a simple method to show that the committed bit based on pseudo-random sequence can be predicted with a probability very close to.

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FPGA implementation of A/D converter using stochastic logic (FPGA를 이용한 확률논리회로 A/D 컨버터의 구현)

  • 이정원;심덕선
    • Proceedings of the IEEK Conference
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    • 1998.06a
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    • pp.847-850
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    • 1998
  • One of the most difficult problem of designing VLSI is a mixed-circuit design, that is to design circuit containing both analog parts and digital parts. Digital to analog converter and analog to digital converter is a typical case. Especially it can be a serious problem when mixed circuit are put into a large digital circuit like microcontroller. However nowadays this problem is settled by separating analog circuit parts outside the IC. This technique is based on converting a digital signal into a pulse sequence. Then an analog signal is obtained by averaging this pulse sequence at the external low-pass filter. An anlog to digital converter is designed using a stochastic logic instead of a traditional PWM (pulse-width modulation) signal and ins implemente dusing FPGa. Stochastic pulse sequence can be made as a simple circuits and moreover can be mathematically processed by simple circuits -AND gates. The spectral property of stochastic pulse sequence method is better than that of PWM method. So it make easy to design a external low-pass filter. This technique has important advantages, especially the reduction of the ADC cost.

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Time Synchronization Performance Improvement based on PN sequence for Advanced T-DMB system (PN 시퀀스 기반 Advanced T-DMB 시간 동기 방법)

  • Bae, Jae-Hwui;Kim, Young-Su;Lim, Jong-Soo;Song, Yun-Jeong;Lee, Soo-In;Han, Dong-Seog
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.35 no.4B
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    • pp.670-676
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    • 2010
  • A time synchronization method for Advanced T-DMB is proposed using PN sequence inserted in PRS for the transmission of hierarchical modulation mode information. The time synchronization offset is estimated through the cross-correlation of the PN sequence and the received PRS. The performance of the proposed method is analyzed by the BER analysis in mobile channel and the results are shown.

Temporal interpolator based on spatial filtering (공간 필터링에 근거한 시간축 내삽기)

  • 김종훈
    • Journal of the Korean Institute of Telematics and Electronics B
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    • v.33B no.8
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    • pp.60-67
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    • 1996
  • In this paper, we propose a new temporal interpolation method based on spatial filtering. Compared with the conventional method, the proposed one may use a few adjacent frames and apply temporal lowpass filtering. To develop this method, we follow the basic approach of sampling rate conversion. Additionally, we use some assumption of video sequence : moving object has constant velocity rigid translational motion. From them, spatial filtering for temporal sampling rate conversion is described. This method has a lot of noise immunity on a motion vector and doesn't make a great difference from the original frame. The interpolated frame shows moderate change even there is a great time difference. This method has exactly same description of motion adaptive spatial filter which has an efficient temporal band-limiting characteristics. It imposes the possibility to make video sequence with good pictural quality.

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Automatic Vowel Sequence Reproduction for a Talking Robot Based on PARCOR Coefficient Template Matching

  • Vo, Nhu Thanh;Sawada, Hideyuki
    • IEIE Transactions on Smart Processing and Computing
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    • v.5 no.3
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    • pp.215-221
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    • 2016
  • This paper describes an automatic vowel sequence reproduction system for a talking robot built to reproduce the human voice based on the working behavior of the human articulatory system. A sound analysis system is developed to record a sentence spoken by a human (mainly vowel sequences in the Japanese language) and to then analyze that sentence to give the correct command packet so the talking robot can repeat it. An algorithm based on a short-time energy method is developed to separate and count sound phonemes. A matching template using partial correlation coefficients (PARCOR) is applied to detect a voice in the talking robot's database similar to the spoken voice. Combining the sound separation and counting the result with the detection of vowels in human speech, the talking robot can reproduce a vowel sequence similar to the one spoken by the human. Two tests to verify the working behavior of the robot are performed. The results of the tests indicate that the robot can repeat a sequence of vowels spoken by a human with an average success rate of more than 60%.

Developing a Reactive System Model from a Scenario-Based Specification Model (시나리오 기반 명세 모델로부터 반응형 시스템 모델 개발)

  • Kwon, Ryoung-Kwo;Kwon, Gi-Hwon
    • Journal of Internet Computing and Services
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    • v.13 no.1
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    • pp.99-106
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    • 2012
  • It is an important and a difficult task to analyze external inputs and interactions between objects for designing and modeling a reactive system consisting of multiple object. Also the reactive system is required huge efforts on confirm it can satisfy requirements under all possible circumstances. In this paper, we build from requirements to a scenario-based specification model using LSC(Live Sequence Chart) extending MSC(Message Sequence Chart) with richer syntax and semantic. Then the reactive system model satisfying all requirements for each object in this system can be automatically created through LTL Synthesis. Finally, we propose a method of reactive system development by iterative process transforming a reactive system model to codes.