• Title/Summary/Keyword: screening technique

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Development of PCR-Based Screening Methods for Macrolide Type Polyketides in Actinomycetes

  • Hyun, Chang-Gu;Suh, Joo-Won
    • Journal of Applied Biological Chemistry
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    • v.42 no.3
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    • pp.119-124
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    • 1999
  • About two thirds of the naturally occurring antibiotics have been discovered from actinomycetes. Therefore, the probability of discovering further new antibiotics from actinomycetes is declining as many known metabolites are isolated repeatedly. However, various efforts leave been made in order to enhance the probability of discovering novel compounds. In the present study, we have developed new screening strategies based on the antibiotic biosynthetic pathway, and the genetic information, utilizing polymerase chain reaction. We have selected macrolide type polyketides. In order to divide the ansamycin group antibotic of macrolide type polyketides, we have selected 3-amino-5-hydroxybenzoic acid (AHBA) moiety which contains a biosynthetically unique structural element in the group as a target molecules. Oligonucleotide primers were designed to amplify DNA fragments of macrolide type polyketide synthase and AHBA synthase genes from fourteen actinomycetes species. This method was successfully applied to all three of the known macrolide type polyketide produccing actinomycetes tested. In addition, it also identified the presence of potential macrolide type polyketide producing genes from seven actinomycetes that were known to produce none of macrolide type polyketides, and AHBA biosynthetic genes in one actinomycetes. This technique is potentially useful for the screening of new antibiotices and cloning of their biosynthetic genes.

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Can Computed Tomography Colonography Replace Optical Colonoscopy in Detecting Colorectal Lesions?: State of the Art

  • Alessia Chini;Michele Manigrasso;Grazia Cantore;Rosa Maione;Marco Milone;Francesco Maione;Giovanni Domenico De Palma
    • Clinical Endoscopy
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    • v.55 no.2
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    • pp.183-190
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    • 2022
  • Colorectal cancer is an important cause of morbidity and mortality worldwide. Optical colonoscopy (OC) is widely accepted as the reference standard for the screening of colorectal polyps and cancers, and computed tomography colonography (CTC) is a valid alternative to OC. The purpose of this review was to assess the diagnostic accuracy of OC and CTC for colorectal lesions. A literature search was performed in PubMed, Embase, and Cochrane Library, and 18 articles were included. CTC has emerged in recent years as a potential screening examination with high accuracy for the detection of colorectal lesions. However, the clinical application of CTC as a screening technique is limited because it is highly dependent on the size of the lesions and has poor performance in detecting individual lesions <5 mm or flat lesions, which, although rarely, can have a malignant potential.

Screening for In Vitro Antifungal Activity of Soil Bacteria Against Plant Pathogens

  • Chang, Sung-Hwan;Lee, Jung-Yeop;Kim, Ki-Deok;Hwang, Byung-Kook
    • Mycobiology
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    • v.28 no.4
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    • pp.190-192
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    • 2000
  • Antifungal bacteria for biological control of plant diseases or production of novel antibiotics to plant pathogens were isolated in 1997 from various soils of Ansung, Chunan, Koyang, and Paju in Korea. Sixty-four bacterial strains pre-screened from approximately 1,400 strains were tested on V-8 juice agar against eight plant pathogenic fungi using in vitro bioassay technique for inhibition of mycelial growth. Test pathogens were Alternaria mali, Colletotrichum gloeosporioides, C. orbiculare, Fusarium oxysporum f. sp. cucumerinum, F. oxysporum f. sp. lycopersici, Magnaporthe grisea, Phytophthora capsici, and Rhizoctonia solani. A wide range of antifungal activity of bacterial strains was found against the pathogenic fungi, and strain RC-B77 showed the best antifungal activity. Correlation analysis between inhibition of each fungus and mean inhibition of all eight fungi by 64 bacterial strains revealed that C. gloeosporioides would be best appropriate for detecting bacterial strains producing antibiotics with potential as biocontrol agents for plant pathogens.

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The screening & characterization of super-producing recombinant Hansenula polymorpha mutant

  • Gang, Hwan-Gu;Park, Hyeong-Su;Lee, Chung-Yeol;Yu, Byeong-Il;Yu, Eun-Jeong;Lee, Seon;Hwang, Seon-Deok;Gang, Hyeon-A;Lee, Sang-Gi
    • 한국생물공학회:학술대회논문집
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    • 2000.11a
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    • pp.684-687
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    • 2000
  • The super-producing recombinant H.polymorpha mutant is obtained by double membrane screening technique combined with optimum mutation method. The characterization of mutant is carried out to find the change of mutant in m-RNA level, cell wall leakage, protease level and methanol utilization metabolic flux. The change of these properties of mutant was figured out.

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Artificial Screening for Black Rot Resistance Based on Different Disease Parameter in Early Cauliflower

  • Pandey, Koshlendra Kumar;Pandey, Padma Kant;Singh, Bijendra
    • Mycobiology
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    • v.31 no.3
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    • pp.173-178
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    • 2003
  • India has maximum genetic materials in early cauliflower, which grow in subtropical conditions. Different disease parameters like linear growth, maximum growth rate per day, AUDPC, apparent infection rate and percent diseased area were calculated in artificially inoculated plants. Apparent infection rate is not co-related with the black rot disease incidence and should never be considered during characterization of disease resistance and varietal screening. Based on the above disease parameters Kunwari-18, Phool Gobhi Kunwari, Kataki-7 and BT-10-2 were selected as moderately resistance to black rot in early cauliflower. These lines can be used for black rot prone area and also for black rot disease improvement programme. Considering the qualitative and quantitative parameters, slow rotting resistance cauliflower lines are selected as such for cultivation and would be best suited in integrated disease programme.

The Use of Guided Waves for Rapid Screening of Chemical Plant Pipework

  • Alleyne, D.N.;Pavlakovic, B.;Lowe, M.J.S.;Cawley, P.
    • Journal of the Korean Society for Nondestructive Testing
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    • v.22 no.6
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    • pp.589-598
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    • 2002
  • The safe operation of petrochemical plant requires screening of the pipework to ensure that there are no unacceptable levels of corrosion. Unfortunately, each plant has many thousands of metres of pipe, much of which is insulated or inaccessible. Conventional methods such as visual inspection and ultrasonic thickness gauging require access to each point of the pipe which is time consuming and very expensive to achieve. Extensional or torsional ultrasonic guided waves in the pipe wall provide an attractive solution to this problem because they can be excited at one location on the pipe and will propagate many metres along the pipe, returning echoes indicating the presence of corrosion or other pipe features. Guided Ultrasonics Ltd have now commercialised the technique and this paper describes the basis of the method, together with examples of practical test results and typical application areas.

Use of Dynamic Reliability Method in Assessing Accident Management Strategy

  • Jae, Moosung
    • International Journal of Reliability and Applications
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    • v.2 no.1
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    • pp.27-36
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    • 2001
  • This Paper proposes a new methodology for assessing the reliability of an accident management, which Is based on the reliability physics and the scheme to generate dynamic event tree. The methodology consists of 3 main steps: screening; uncertainty propagation; and probability estimation. Sensitivity analysis is used for screening the variables of significance. Latin Hypercube sampling technique and MAAP code are used for uncertainty propagation, and the dynamic event tree generation method is used for the estimation of non-success probability of implementing an accident management strategy. This approach is applied in assessing the non-success probability of implementing a cavity flooding strategy, which is to supply water into the reactor cavity using emergency fire systems during the sequence of station blackout at the reference plant.

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Diffusion-Weighted Magnetic Resonance Imaging of the Breast: Standardization of Image Acquisition and Interpretation

  • Su Hyun Lee;Hee Jung Shin;Woo Kyung Moon
    • Korean Journal of Radiology
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    • v.22 no.1
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    • pp.9-22
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    • 2021
  • Diffusion-weighted (DW) magnetic resonance imaging (MRI) is a rapid, unenhanced imaging technique that measures the motion of water molecules within tissues and provides information regarding the cell density and tissue microstructure. DW MRI has demonstrated the potential to improve the specificity of breast MRI, facilitate the evaluation of tumor response to neoadjuvant chemotherapy and can be employed in unenhanced MRI screening. However, standardization of the acquisition and interpretation of DW MRI is challenging. Recently, the European Society of Breast Radiology issued a consensus statement, which described the acquisition parameters and interpretation of DW MRI. The current article describes the basic principles, standardized acquisition protocols and interpretation guidelines, and the clinical applications of DW MRI in breast imaging.

Feasibility in Differentiation of Resistance of Rice Varieties to Brown Planthopper (Nilaparvata lugens Stal) using Radisoisotope (P-32) Tracer-Technique (P-32를 이용한 벼멸구(Nilaparvata lugens Stal) 저항성 검정법에 관한 연구)

  • Chung K.H.;Kwon S.H.;Choi S.Y.
    • Korean journal of applied entomology
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    • v.20 no.4 s.49
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    • pp.207-211
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    • 1981
  • It has been documented that the resistance to planthoppers is attributed to the feeding preference of the insects. This might be related to difference in the amount of feeding plant sap between resistant and susceptible hosts. In this aspect, this study was conducted to verify it and to develop an effective screening method for resistance to planthoppers by tracer technique. An effective P-32 labelling of rice seedlings at $2\~3$ leaf stage was dipping the roots in concentration of $0.1{\mu}Ci/ml$ solution for 48 hours. Radioactivity was significantly higher in planthopers fed on susceptible variety for 48 hours as compared to those fed on resistant variety. Radioactivity of adults was higher than that of nymphs and also higher in female than male. The results were highly correlated to that indicated by the feeding preference of the insects and therefore, considered to be valid for a screening technique.

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Feasibility on Differentiation of Resistance of Rice Varieties to Whitebacked Planthopper (Sogatella furcifera) using Radioisotope (방사성동위원소를 이용한 흰등멸구(Sogatella furcifera)의 저항성 검정법에 관한 연구 (2))

  • Chung K.H.;Choi S.Y.
    • Korean journal of applied entomology
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    • v.22 no.1 s.54
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    • pp.41-44
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    • 1983
  • In order to evaluate the technique of P-32 labelling method for screening lines of rice to whitebacked planthopper, the relationship between the amount of ingestion and feeding preference of insects were observed with the resistant and susceptible lines where characteristics were predetermined by comparing their feeding preference and antibiosis method. The feeding preference of the insects was significantly correlated with the amount of P-32 ingestion. It was more manifest in adults than nymphs of the whitebacked planthopper. The density of nymph and radioactivity of P-32 were high in the susceptible line. This suggested that deforming the ingestion amount of P-32 in the insects seemed to be useful technique for accurate screening. For this technique, the uniform labelling of P-32 on the rice seedings was prerequisite and the uniformity was increased by triming roots and leaves in the length and number.

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