• 한국토양환경학회지
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• 제3권2호
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• pp.71-78
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• 1998

Pyrene은 보통 석유류로서 오염된 지역에서 쉽게 발견된다. 이 화합물은 생물학적으로 난분해성물질이므로 오염지역에서 장시간 존재한다. 세 종류의 토양(rhizosphere soil, non-rhizosphere soil, sterilized soil)에서 pyrene의 분해속도를 조사하기 위하여 microcosm실험을 수행하였다. Pyrene 농도감소속도는 rhizosphere soil)non-rhizosphere soil>sterilized soil 순서로 증가하였다. 또한 뿌리 유출물을 모사한 유기산의 첨가는 pyrene의 농도감소에 큰영향을 미치지 않았으나 pyrene농도감소 속도와 토양미생물의 증가는 좋은 상관관계를 보여주었다. 따라서 본 연구에서는 미생물의 밀도가 높은 rhizosphere 토양에서 pyrene의 생물학적 분해가 효과적으로 진행되는 것으로 나타났다.

• 생명과학회지
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• 제24권4호
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• pp.461-466
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• 2014

본 연구에서는 독도에 자생하는 3종의 해안식물 해국(Aster sphathulifolius), 땅채송화(Sedum oryzifolium), 갯까치수영(Lysimachia mauritiana)을 연구 재료로 사용하였다. 각 식물에서 근권세균을 각 9주씩 분리하고, 동정하여 이들 세균의 다양성을 조사하고 근권 토양의 세균 집단 조성을 분석하였다. 16S rDNA의 염기서열 분석 결과, 계통학적으로 총 4문 19종의 근권세균이 분리, 동정, 확인되었다. 또한 본 실험을 통하여 독도 자생식물 근권 균주의 최적 생육 환경이 확인되었다. S. oryzifolium는 Rhodobacterales목, Micrococcales목, Corynebacteriales목, Flavobacteriales목, Oceanospirillales목, Bacillales목의 세균 균주가 확인되었으며, 자생식물 L. mauritiana에서는 Micrococcales목, Flavobacteriales목, Rhizobiales목, Oceanospirillales목, Rhodobacterales목, Bacillales목의 세균균주가 확인되었다. 자생식물 A. sphathulifolius에서는 Flavobacteriales목, Rhizobiales목, Corynebacteriales목, Micrococcales목, Alteromonadales목 및 Bacillales목의 균주가 분리, 동정, 확인되었다. 본 연구를 바탕으로 3종의 자생식물에서 방선균문(Actinobacteria)과 프로테오박테리아문(Proteobacteria)에 속하는 근권세균이 많이 존재함을 확인할 수 있었다.

• Journal of Microbiology and Biotechnology
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• 제32권10호
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• pp.1292-1298
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• 2022

Soil autotrophic bacterial communities play a significant role in the soil carbon (C) cycle in paddy fields, but little is known about how rhizosphere soil microorganisms respond to different long-term (35 years) fertilization practices under double rice cropping ecosystems in southern China. Here, we investigated the variation characteristics of rhizosphere soil RubisCO gene cbbL in the double rice ecosystems of in southern China where such fertilization practices are used. For this experiment we set up the following fertilizer regime: without any fertilizer input as a control (CK), inorganic fertilizer (MF), straw returning (RF), and organic and inorganic fertilizer (OM). We found that abundances of cbbL, 16S rRNA genes and RubisCO activity in rhizosphere soil with OM, RF and MF treatments were significantly higher than that of CK treatment. The abundances of cbbL and 16S rRNA genes in rhizosphere soil with OM treatment were 5.46 and 3.64 times higher than that of CK treatment, respectively. Rhizosphere soil RubisCO activity with OM and RF treatments increased by 50.56 and 45.22%, compared to CK treatment. Shannon and Chao1 indices for rhizosphere soil cbbL libraries with RF and OM treatments increased by 44.28, 28.56, 29.60, and 23.13% compared to CK treatment. Rhizosphere soil cbbL sequences with MF, RF and OM treatments mainly belonged to Variovorax paradoxus, uncultured proteobacterium, Ralstonia pickettii, Thermononospora curvata, and Azoarcus sp.KH33C. Meanwhile, cbbL-carrying bacterial composition was obviously influenced by soil bulk density, rhizosphere soil dissolved organic C, soil organic C, and microbial biomass C contents. Fertilizer practices were the principal factor influencing rhizosphere soil cbbL-carrying bacterial communities. These results showed that rhizosphere soil autotrophic bacterial communities were significantly changed under conditions of different long-term fertilization practices Therefore, increasing rhizosphere soil autotrophic bacteria community with crop residue and organic manure practices was found to be beneficial for management of double rice ecosystems in southern China.

• 한국산학기술학회논문지
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• 제7권4호
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• pp.704-708
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• 2006

경유로 오염된 인공오염토양을 효과적으로 정화하기위하여 물리 화학적 처리방법인 펜톤 산화반응과 생물학적 처리방법인 근권미생물의 활성도를 이용하는 방법을 연속적으로 적용하였다. 펜톤산화반응에서는 과산화수소의 농도가 증가할수록 TPH의 제거율이 증가하였으며 근권미생물 반응실험에서의 TPH 제거 효율은 콩(83.5%)<벼(81.5%)<대조군(76%) 순으로 나타났다.

• The Plant Pathology Journal
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• 제35권4호
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• pp.362-371
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• 2019

Plant phenotype is affected by a community of associated microorganisms which requires dissection of the functional fraction. In this study, we aimed to culture the functionally active fraction of an upland soil microbiome, which can suppress tomato bacterial wilt. The microbiome fraction (MF) from the rhizosphere of Hawaii 7996 treated with an upland soil or forest soil MF was successively cultured in a designed modified M9 (MM9) medium partially mimicking the nutrient composition of tomato root exudates. Bacterial cells were harvested to amplify V3 and V4 regions of 16S rRNA gene for QIIME based sequence analysis and were also treated to Hawaii 7996 prior to Ralstonia solanacearum inoculation. The disease progress indicated that the upland MM9 $1^{st}$ transfer suppressed the bacterial wilt. Community analysis revealed that species richness was declined by successive cultivation of the MF. The upland MM9 $1^{st}$ transfer harbored population of phylum Proteobacteria (98.12%), Bacteriodetes (0.69%), Firmicutes (0.51%), Actinobacteria (0.08%), unidentified (0.54%), Cyanobacteria (0.01%), FBP (0.001%), OD1 (0.001%), Acidobacteria (0.005%). The family Enterobacteriaceae of Proteobacteria was the dominant member (86.76%) of the total population of which genus Enterobacter composed 86.76% making it a potential candidate to suppress bacterial wilt. The results suggest that this mixed culture approach is feasible to harvest microorganisms which may function as biocontrol agents.

• 한국토양비료학회지
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• 제47권3호
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• pp.141-146
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• 2014

The necessity to develop economical and eco-friendly technologies is steadily increasing. Plant growth promoting rhizomicrobial strains PGPR are a group of microorganisms that actively colonize plant roots and increase plant growth and yield. Pot experiments were used to investigate the potential of some rhizobacterial strains to enhance the Brassica rapa growth. Microbial strains were successfully isolated from the rhizosphere of Panax ginseng and characterized based on its morphological and plant growth promotion characters. Surface disinfected seeds of Wisconsin Fast B. rapa were inoculated with the selected PGPR microorganisms. The different pots treatments were inoculated by its corresponding PGPR ($10^7cfu\;mL^{-1}$) and incubated in the growth chamber at $25^{\circ}C$ and 65% RH, the light period was adjusted to 24 hours (day). NPK chemical fertilizer and trade product (EMRO, USA) of effective microorganisms as well as un-inoculated control were used for comparison. Plants harvested in 40 days were found to have significant increase in leaf chlorophyll units and plant height and also in dry weight of root and shoot in the inoculated seedlings. Root and shoot length and also leaf surface area significantly were increased by bacterial inoculation in sterile soil. The study suggests that Rhodobacter capsulatus and Azotobacter chroococcum are beneficial for B. rapa growth as they enhance growth and induced IAA production and phosphorus solubilization. This study presents some rhizomicrobial strains that significantly promoted growth of Wisconsin Fast Plant B. rapa in pot experiment under different soil conditions.

• Journal of Microbiology and Biotechnology
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• 제16권11호
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• pp.1661-1677
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• 2006

Rhizobium and related genera are soil bacteria with great metabolic plasticity. These microorganisms survive in many different environments and are capable of eliciting the formation of nitrogen-fixing nodules on legumes. The successful establishment of symbiosis is precisely regulated and requires a series of signal exchanges between the two partners. Quorum sensing (QS) is a prevalent form of population density-dependent gene regulation. Recently, increasing evidence indicates that rhizobial quorum sensing provides a pervasive regulatory network, which plays a more generalized role in the physiological activity of free-living rhizobia, as well as during symbiosis. Several rhizobia utilize multiple, overlapping quorum sensing systems to regulate diverse properties, including conjugal transfer and copy number control of plasmids, exopolysaccharide biosynthesis, rhizosphere-related functions, and cell growth. Genomic and proteomic analyses have begun to reveal the wide range of functions under quorum-sensing control.

• Journal of Microbiology and Biotechnology
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• 제30권6호
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• pp.848-855
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• 2020

Land subsidence induced by underground coal mining leads to severe ecological and environmental problems. Arbuscular mycorrhizal fungi (AMF) have the potential to improve plant growth and soil properties. We aimed to assess the effects of AMF on the growth and soil properties of sea buckthorn under field conditions at different reclamation times. Inoculation with AMF significantly promoted the survival rate of sea buckthorn over a 50-month period, while also increasing plant height after 14, 26, and 50 months. Crown width after 14 months and ground diameter after 50 months of inoculation treatment were significantly higher than in the uninoculated treatment. AMF inoculation significantly improved plant mycorrhizal colonization rate and promoted an increase in mycelial density in the rhizosphere soil. The pH and electrical conductivity of rhizosphere soil also increased after inoculation. Moreover, after 26 and 50 months the soil organic matter in the inoculation treatment was significantly higher than in the control. The number of inoculated soil rhizosphere microorganisms, as well as acid phosphatase activity, also increased. AMF inoculation may play an active role in promoting plant growth and improving soil quality in the long term and is conducive to the rapid ecological restoration of damaged mining areas.

• 한국해양바이오학회지
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• 제16권1호
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• pp.1-18
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• 2024

Coastal dunes must be conserved. Their native halophytes support coastal geography while their symbiotic microorganisms help vegetation thrive. The Goraebul coast has the largest, well-conserved dune system on the East Sea of the Korean Peninsula due to a climax mixed halophyte (C. soldanella, C. kobomugi, and E. mollis) vegetation support. This study identified rhizobacteria and their diversity in mixed halophyte communities unique to Goraebul. Five phyla, 12 genera, and 21 species were identified based on 16S rDNA sequences from 65 isolates. The phylum Bacillota, class Bacillota, order Bacillales, and family Bacillaceae were identified, with Bacillus as the dominant genus (46.15%). The richness and Shannon's diversity were higher at the species than at the genus level due to the dominance of Bacillus; however, various Bacillus species (7) were identified. Therefore, the climax mixed vegetation adapted to the Goraebul coast may exert natural selection pressure in favor of the common characteristics of Bacillus. However, despite this advantage, the Shannon equitability (0.86), Simpson (0.08), and Shannon diversity (2.79) indexes indicate a stable rhizosphere cluster and the climax mixed vegetation is affected by symbiotic relationships between healthy rhizosphere microbiota.

• 한국미생물·생명공학회지
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• 제33권3호
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• pp.169-177
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• 2005

본 연구는 어업이나 농업 등의 인간활동에 의하여 상당한 영향을 받고 있는 순천만 갈대의 근권에서 이루어지는 정화작용에 있어 미생물의 역할을 조사하는 것에 중점을 두었다. 일반적으로 만은 환경 스트레스로 인한 갑작스런 충격을 감소시키는 완충지역으로서의 역할을 하는 것으로 알려져 있다. 갈대근권에서 이루어지는 정화기능에 있어 미생물의 역할을 밝히기 위한 첫 번째 노력의 일환으로 벤젠, 톨루엔, 또는 자일렌이 단일 탄소 및 에너지원으로 첨가된 농화배양법을 사용하여 BTEX를 분해할 수 있는 두 종류의 그람양성 세균을 순수분리하였다. 다양한 온도조건의 BTEX배지에서 이들 세균을 배양하는 동안 BTEX의 분해율 및 성장률을 주기적으로 조사한 결과 $37^{\circ}C$에서 가장 빠른 기질 분해율을 보였고 $42^{\circ}C$의 고온에서도 두 균 모두 잘 성장하는 것으로 나타났다. 본 연구에서 시험한 수은, 카드뮴, 납, 바륨, 철 대부분의 중금속에 강한 내성뿐만 아니라 ampicillin을 비롯한 시험한 5종류의 항생제 모두에 강한 내성을 나타냈다. 16S rRNA 유전자 서열과 다양한 표현형 및 형태학적 특성을 기초로 한 동정의 결과 BTEX를 분해할 수 있는 두 균주는 $95{\%}$상의 신뢰도로 Microbacterium sp.와 Rhodococcus sp.로 나타났고, 각 균주는 Microbacterium sp. EMB-1과 Rhodococcus sp. EMB-2로 명명하였다. 이러한 결과는 주요한 염습지 식물중의 하나인 갈대의 근권에서 살아가는 이들 균주들이 BTEX와 같은 석유로 오염된 근권 환경의 정화작용에 중요한 역할을 할 수 있음을 제시해주었다.