• 제목/요약/키워드: restriction map

검색결과 126건 처리시간 0.018초

Molecular Cloning of Chitinase Genes Family from Serratia marcescens

  • Song, Young-Hwan;Kweon, Oh-Gun
    • 한국어병학회지
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    • 제6권2호
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    • pp.103-110
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    • 1993
  • Sau3AI으로 부분절단한 Serratia marcescens genomic DNA(5Kb 이상)을 pUC19의 BamHI site에 삽입하여 total genomic library를 준비하였다. Swollen colloidal chitin media에서 halo를 형성하는 2개의 E.coli 형질전환주를 선별하였다. 이들 colony가 chitinase 유전자를 갖음을 재확인하기 위하여 4-methylumbelliferyl N-acetyl-$\beta$-D-glucosaminide(4-MuFGlcNAc)를 이용하였다. 4-MuFGlcNAc는 chitinase에 대한 기질특이성을 나타내며 형광을 나타내는 기질로서 positive clone들은 360nm의 자외선을 조사하였을 경우 밝은 형광을 나타낸다. pUC19으로 부터 유래된 2 종류의 다른 chitinase clone, pCH1(11.0Kb) 및 pCH2(7.5Kb)를 genomic DNA library로 부터 분리하였으며, 이들의 제한효소지도를 작성한 결과 서로 다른 제한효소지도를 나타내었다. pCH1EA 및 pCH2로 부터 각각의 EcoRI-Xbal fragment를 subcloning함으로써 두개의 다른 chitinase 유전자의 위치를 결정하였다. pCH1EA 및 pCH2를 cross hybridization 한 결과 hybridization signal을 나타내지 않아 서로 유사성이 없는 것으로 사료된다.

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Rhizobium sp. SNU003의 nifHD 클로닝 (Molecular Cloning of nifHD from Rhizobium sp. SNU003)

  • 강명수;안정선
    • 미생물학회지
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    • 제31권2호
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    • pp.123-128
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    • 1993
  • 해녀콩 뿌리혹의 질소고정 공생균인 Rhizobium sp. SNU003 균주의 게놈내 7.9 kb 의 EcoRI, 6.5kb 의 SalI, 7.3 kb 의 HindIII 와 4.4 kb 의 PstI 절편에 nifHD 가 존재함을 확인하였다. 람다파아지 EMBL3-BamHI arm 을 사용하여 genomic library 를 제조하였으며 이로부터 nif-유전자를 포함하고 있는 9개의 재조합 파아지 클론을 선별하였다. 이들 중 15.3 kb 의 삽입 DNA 를 가지고 있는 Rnif-6 클론은 7.6 kb 의 BamHI/SacI 절편에 nifHD 가 위치하고 있었다. 따라서 이절편을 pUC19 에 sub cloning 하고 제한효소 지도를 작성한 결과 Rhizobium sp. SNU003 의 nifH 와 nifD 는 4.5 kb 의 BamHI/BglII 절편에 연속배열하고 있다.

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Gene Cloning and Nucleotide Sequence of Human Dihydrolipoamide Dehydrogenase-Binding Protein

  • Lee, Jeongmin;Ryou, Chongsuk;Jeon, Bong Kyun;Lee, Poongyeon;Woo, Hee-Jong;Kwon, Moosik
    • Asian-Australasian Journal of Animal Sciences
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    • 제15권3호
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    • pp.421-426
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    • 2002
  • The pyruvate dehydrogenase complex (PDC), a member of $\alpha$-keto acid dehydrogenase complex, catalyzes the oxidative decarboxylation of pyruvate with the formation of $CO_2$, acetyl-CoA, NADH, and $H^+$. This complex contains multiple copies of three catalytic components including pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). Two regulatory components (E1-kinase and phospho-E1 phosphatase) and functionally less-understood protein (protein X, E3BP) are also involved in the formation of the complex. In this study, we have partially cloned the gene for E3BP in human. Nine putative clones were isolated by human genomic library screening with 1.35 kb fragment of E3BP cDNA as a probe. For investigation of cloned genes, Southern blot analysis and the construction of the restriction map were performed. One of the isolated clones, E3BP741, has a 3 kb-SacI fragment, which contains 200 bp region matched with E3BP cDNA sequences. The matched DNA sequence encodes the carboxyl-terminal portion of lipoyl-bearing domain and hinge region of human E3BP. Differences between yeast E3BP and mammalian E3BP coupled with the remarkable similarity between mammalian E2 and mammalian E3BP were confirmed from the comparison of the nucleotide sequence and the deduced amino acid sequence in the cloned E3BP. Cloning of human E3BP gene and analysis of the gene structure will facilitate the understanding of the role(s) of E3BP in mammalian PDC.

Investigation of Single Nucleotide Polymorphisms in Porcine Chromosome 2 Quantitative Trait Loci for Meat Quality Traits

  • Do, K.T.;Ha, Y.;Mote, B.E.;Rothschild, M.F.;Choi, B.H.;Lee, S.S.;Kim, T.H.;Cho, B.W.;Kim, K.S.
    • Asian-Australasian Journal of Animal Sciences
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    • 제21권2호
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    • pp.155-160
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    • 2008
  • Several studies have reported quantitative trait loci (QTL) for meat quality on porcine chromosome 2 (http://www.animalgenome.org/QTLdb/pig.html). For application of the molecular genetic information to the pig industry through marker-assisted selection, single nucleotide polymorphism (SNP) markers were analyzed by comparative re-sequencing of polymerase chain reaction (PCR) products of 13 candidate genes with DNA from commercial pig breeds such as Berkshire, Yorkshire, Landrace, Duroc and Korean Native pig. A total of 34 SNPs were identified in 15 PCR products producing an average of one SNP in every 253 bp. PCR restriction fragment length polymorphism (RFLP) assays were developed for 11 SNPs and used to investigate allele frequencies in five commercial pig breeds in Korea. Eight of the SNPs appear to be fixed in at least one of the five pig breeds, which indicates that different selection among pig breeds might be applied to these SNPs. Polymorphisms detected in the PTH, CSF2 and FOLR genes were chosen to genotype a Berkshire-Yorkshire pig breed reference family for linkage and association analyses. Using linkage analysis, PTH and CSF2 loci were mapped to pig chromosome 2, while FOLR was mapped to pig chromosome 9. Association analyses between SNPs in the PTH, CSF2 and FOLR suggested that the CSF2 MboII polymorphism was significantly associated with several pork quality traits in the Berkshire and Yorkshire crossed F2 pigs. Our current findings provide useful SNP marker information to fine map QTL regions on pig chromosome 2 and to clarify the relevance of SNP and quantitative traits in commercial pig populations.

Corynebacterium glutamicum-Escherichia coli Shuttle Vector 개발과 C.glutamicum 의 Homoserine Dehydrogenase Gene Cloning (Construction of a Corynebacteriurn glutarnicum-Escherichicr coli Shuttle Vector and Cloning the Homoserine ehydrogenase Gene from C. glutamicum)

  • 최신건;박종현;신현경
    • 한국미생물·생명공학회지
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    • 제19권1호
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    • pp.31-36
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    • 1991
  • Tn5의 kanamycin 저항성 유전자를 가진 pBEL1 plasmid와 C.glutamicum cryptic plasmid인 pSR1으로 7.5kb의 새로운 plasmid를 만든 후, 이를 pCE1301이라 명명하였다. 이 pCE1301은 PEG1301은 PEG-protoplast법으로 C.glutamicum을 형질전환하였을 때 효율이 약 $3.0\times 10^3$형질전환제/$\mu g$이었으며 SalI과 EcoRI 제한효소 절단부위가 1개씩이었다. 또 Km이 없는 배지에서 25세대까지 안정하게 유지되었으며 B.flavum, E.coli에서 복제되었다. 이 pCE1301을 이용하여 C.glutamicum 의 homoserine dehydrogenase 유전자를 cloning하였다.

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Zymomonas mobilis플라스미드의 특성연구 및 E.coli-Zymomonas셔틀 벡터 제조 (Characterization of plasmids of Zymomonas mobils and Construction of E. coli-Zymomonas shuttle Vector)

  • 이용억;이병재;강현삼
    • 미생물학회지
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    • 제23권1호
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    • pp.56-63
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    • 1985
  • Zymomonas Mobilis로 부터 플라스미드를 분리하여 그 특성을 조사하고 E. col i와 Zymomas양쪽에서 모두 복제하는 셔틀벡터를 제조하였다. Zymomonas mobilis의 4 균주로부터 native plasmid를 분리해 본 결과 모든 Zymomonas균주들은 적어도 하나 이상의 플라스미드를 가지고 있었으며 그 크기는 1.7kb에서 46kb사이였다. 숙주균 주를 선정하고자 Zymomonas의 각종 항생물질에 대한 약재내성을 조사한 결과 특히 tetracycline과 chloramphenic col에 아주 민감한 것으로 나타났다. Zymomonas의 플라스미드들간의 염기배열의 유사성을 조사한 결과 ATCC 1 10988과 ZM 1의 플라스미드들간에는 염기배열의 유사성이 있었고 ZM 4와 Agll은 유사성이 없었다. 클로닝벡터로 개발하고자 하는 ATCC 10988의 1.7kb플라스미드를 pZM886이라 명명하고 이 pZM886을 pBR322와 재조합시켜서 pBZ41이라 명명하였다. pBZ41의 제한효소지도를 작성하였다. pBZ41을 이용하여 조사한 결과 Zymomonas의 replicon은 E.coli에서 작동되지 않았으며 pBR322는 또한 Zymomonas내에서 복제되지 않는 것으로 추정되었다. pBZ41을 conjugal mobilization방법으로 E.coli에서 Zymomonas로 옮겼을 때 Conjugation 된 Zymomonas 들은 모두 tetracycline에 저항성을 나타내었으며 안정하게 플라스미드를 유지시켰다.

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인간 단클론 항체 생산용 Humanized Xenomouse 제작의 기초 소재인 생쥐 Ig 중사슬 및 경사슬 Genomic DNA 클론의 확보 및 유전자 적중 벡터의 제작 (Isolation of Mouse Ig Heavy and Light Chain Genomic DNA Clones, and Construction of Gene Knockout Vector for the Generation of Humanized Xenomouse)

  • 이희경;차상훈
    • IMMUNE NETWORK
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    • 제2권4호
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    • pp.233-241
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    • 2002
  • Background: Monoclonal antibodies (mAb) of rodent origin are produced with ease by hybridoma fusion technique, and have been successfully used as therapeutic reagents for humans after humanization by genetic engineering. However, utilization of these antibodies for therapeutic purpose has been limited by the fact that they act as immunogens in human body causing undesired side effects. So far, there have been several attempts to produce human mAbs for effective in vivo diagnostic or therapeutic reagents including the use of humanized xenomouse that is generated by mating knockout mice which lost Ig heavy and light chain genes by homologous recombination and transgenic mice having both human Ig heavy and light gene loci in their genome. Methods: Genomic DNA fragments of mouse Ig heavy and light chain were obtained from a mouse brain ${\lambda}$ genomic library by PCR screening and cloned into a targeting vector with ultimate goal of generating Ig knockout mouse. Results: Through PCR screening of the genomic library, three heavy chain and three light chain Ig gene fragments were identified, and restriction map of one of the heavy chain gene fragments was determined. Then heavy chain Ig gene fragments were subcloned into a targeting vector. The resulting construct was introduced into embryonic stem cells. Antibiotic selection of transfected cells is under the progress. Conclusion: Generation of xenomouse is particularly important in medical biotechnology. However, this goal is not easily achieved due to the technical difficulties as well as huge financial expenses. Although we are in the early stage of a long-term project, our results, at least, partially contribute the successful generation of humanized xenomouse in Korea.

옥수수 R-mb 유전자의 유전분석과 그의 구조 (Genetic and molecular analysis of the R-mb gene from maize)

  • 윤필용;유삼규;송원용;윤충효;임용표
    • 식물조직배양학회지
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    • 제24권3호
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    • pp.161-165
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    • 1997
  • 옥수수의 색소합성을 조절하는 pattern allele의 하나인 R-mb유전자의 구조와 유전적 분석을 수행하였다. R-mb 유전자의 유전분석을 수행한 결과를 검토하여 볼 때 후대로 진행됨에 따라 색소 발현빈도_의 감소경향을 보이고 있었다. 또한 R-mb 유전자가 몇 개의 R subcomplex로 존재하는가를 알기 위해서는 우선 R specific probe인 pR-nj:1를 이용하여 Southern blot hybridization을 실시한 결과 약 3.9kb 및 약 7.75kb영역에서 2개의 band가 관찰되었다. R-mb 유전자를 클로닝하기 위하여 λFIXIIvector를 이용하여 library를 만들고 이로부터 mb-II, III, V, Ⅵ, Ⅶ 등 5개의 clone을 3차의 screen을 거쳐 확보하고 이중 mb-II 및 mb-Ⅵ를 중심으로 제한효소지도를 작성하였으며, 이 유전자의 구조와 기타 R locus관련 유전자들과 비교하였으며, 이러한 두 개의 R 요소가 어떻게 색소발현에 영향을 미치는가에 대에 검토하였다.

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유비쿼터스 환경을 위한 Web-GIS 기반의 객체위치정보 모니터링 시스템 (A Web-GIS based on Object Location Information Monitoring System for Ubiquitous Environment)

  • 김택천;김석훈;김진수
    • 한국정보통신학회논문지
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    • 제11권9호
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    • pp.1755-1763
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    • 2007
  • 위치정보는 유비쿼터스 환경에서 중요한 정보라고 할 수 있으며, 이를 활용하기 위한 새로운 지리 정보시스템(GIS: Geographical Information System)의 솔루션들이 요구되고 있다. 본 논문에서는 XML(eXtensible Markup Language)을 이용하여 웹 지리정보 서비스 시스템을 개선하기 위한 방법을 살펴보고, 구체적인 구현 결과를 제시하였다. 이는 인터넷을 통해 제공하는 다양한 지리 정보를 이기종 시스템 환경의 제약을 받지 않는 지도 서비스의 형태로 설계하였고, 사용자가 필요로 하는 지리 정보에 대한 서비스를 요청할 때 쉽고 빠르게 전달해 주는 것을 목적으로 하였다. 기존의 웹 지리정보 서비스를 보완하고 개선하기 위해 확장 가능하고 표준화된 형태의 XML을 이용하여 개발하였고, 고가의 GIS 소프트웨어를 구입하거나 각 업체에서 제공하는 응용 프로그램의 설치 없이 웹 브라우저에서도 지도 서비스를 이용할 수 있도록 구현하였다.

종자내 아미노산 합성 조절 유전자에 관한 연구 (Amino Acid Biosynthesis and Gene Regulation in Seed)

  • 임용표;서미정;조수진;이정희;이효연
    • 한국식물학회:학술대회논문집
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    • 한국식물학회 1996년도 제10회 식물생명공학심포지움 고등식물 발생생물학의 최근 진보
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    • pp.61-74
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    • 1996
  • Human and monogastric animals can not synthesize 10 out of the 20 amino asids and therefor need to obtain these from their diet. The plant seed is a major source of dietary protein. It is particular important in their study to increase nutritional quality of the seed storage proteins. The low contents of lysine, asparagine and threonenein various cereal seeds and of cystein and methionine. In legume seeds is due to the low proportions of these amino acids in the major storage proteins, we have tried to apply the three strategies; (1) mutagenesis and selection of specific amino acid analogue resistance, (2) cloning and expression study of lysine biosynthesis related gene, (3) transfomation of lysine rich soybean glycinin gene. The 5-methyltryptophan (5MT) resistant cell lines, SAR1, SAR2 and SAR3 were selected from anther derived callus of rice (Oryza sativa L. "Sasanishiki"). Among these selected cell lines, two (SAR1 and SAR3) were able to grow stably at 200 mg/L of 5MT. Analysis of the freed amino acids in callus shows that 5MT resistant cells (SAR3) accumulated free tryptophan at least up to 50 times higher than those that of the higher than of SAS. These results indicated that the 5MT resistant cell lines are useful in studies of amino acid biosynthesis. Tr75, a rice (Oryza sativa L., var. Sasanishiki) mutant resistant to 5MT was segregated from the progenies of its initial mutant line, TR1. The 5MT resistant of TR75 was inherited in the M8 generations as a single dominant nuclear gene. The content of free amino acids in the TR75 homozygous seeds increased approximately 1.5 to 2.0 fold compared to wild-type seeds. Especially, the contents of tryptophan, phenylalanine and aspartic acid were 5.0, 5.3 and 2.7 times higher than those of wild-type seeds, respectively. The content of lysine is significantly low in rice. The lysine is synthesized by a complex pathway that is predominantly regulated by feedback inhibition of several enzymes including asparginase, aspatate kinase, dihydrodipicolinat synthase, etc. For understanding the regulation mechanism of lysine synthesis in rice, we try to clone the lysine biosynthetic metabolism related gene, DHPS and asparaginase, from rice. We have isolated a rice DHPS genomic clone which contains an ORF of 1044 nucleotides (347 amino acids, Mr. 38, 381 daltons), an intron of 587 nucleotides and 5'and 3'-flanking regions by screening of rice genomic DNA library. Deduced amino acid sequence of mature peptide domain of GDHPS clone is highly conserved in monocot and dicot plants whereas that of transit peptide domain is extremely different depending on plant specie. Southern blot analysis indicated that GDHPS is located two copy gene in rice genome. The transcripts of a rice GDHPS were expressed in leaves and roots but not detected in callus tissues. The transcription level of GDHPS is much higher in leaves indicating enormous chloroplast development than roots. Genomic DNA clones for asparaginase genes were screened from the rice genomic library by using plaque hybridization technique. Twelve different genomic clones were isolated from first and second screening, and 8 of 12 clones were analyzed by restriction patterns and identified by Southern Blotting, Restriction enzyme digestion patterns and Southern blot analysis of 8 clones show the different pattern for asparaginase gene. Genomic Southern blot analysis from rice were done. It is estimated that rice has at least 2-3 copy of asparaginase gene. One of 8 positive clones was subcloned into the pBluescript SK(+) vector, and was constructed the physical map. For transformation of lysine rich storage protein into tobacco, soybean glycinin genes are transformed into tobacco. To examine whether glycinin could be stably accumulated in endosperm tissue, the glycinin cDNA was transcriptionally fused to an endosperm-specific promotor of the rice storage protein glutelin gene and then introduced into tobacco genomic via Agrobacterium-mediated transformation. Consequently the glycinin gene was expressed in a seed-and developmentally-specific manner in transgenic tobacco seeds. Glycinin were targeted to vacuole-derived protein bodies in the endosperm tissue and highly accumulated in the matrix region of many transgenic plant (1-4% of total seed proteins). Synthesized glycinin was processed into mature form, and assembled into a hexamer in a similar manner as the glycinin in soybean seed. Modified glycinin, in which 4 contiguous methionine residues were inserted at the variable regions corresponding to the C - teminal regions of the acidic and basic polypeptides, were also found to be accumulated similarly as in the normal glycinin. There was no apparent difference in the expression level, processing and targeting to protein bodies, or accumulation level between normal and modified glycinin. glycinin.

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