• Title/Summary/Keyword: reptile

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Classification of Antimicrobial Peptides among the Innate Immune Modulators (선천성 면역조절자인 항생펩타이드 분류)

  • Lee, Jong-Hwan
    • Journal of Life Science
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    • v.25 no.7
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    • pp.833-838
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    • 2015
  • Multidrug-resistant super bacterial, fungal, viral, and parasitic infections are major health threaten pathogens. However, to overcome the present healthcare situation, among the leading alternatives to current drugs are antimicrobial peptides (AMPs), which are abundantly produced via various species in nature. AMPs, small host defense proteins, are in charge of the innate immunity for the protection of multicellular organisms such as fish, amphibian, reptile, plants and animals from infection. The number of AMPs identified per year has increased steadily since the 1980s. Over 2,000 natural AMPs from bacteria, protozoa, fungi, plants, and animals have been listed into the antimicrobial peptide database (APD). The majority of these AMPs (>86%) possess 11–50 amino acids with a net charge from 0 to +7 and hydrophobic percentages between 31–70%. This report classified AMP into several categories including biological source, biological functions, peptide properties, covalent bonding pattern, and 3D structure. AMP functions not only antimicrobial activity but facilitates cell biological activity such as chemotatic activity. In addition, fibroblastic reticular cell (FRC) originated from mouse lymph node stroma induced the expression of AMP in inflammatory condition. AMP induced from FRC contained whey acidic protein (WAP) domain. It suggests that the classification of AMP will be done by protein domain.

Using Text-mining Method to Identify Research Trends of Freshwater Exotic Species in Korea (텍스트마이닝 (text-mining) 기법을 이용한 국내 담수외래종 연구동향 파악)

  • Do, Yuno;Ko, Eui-Jeong;Kim, Young-Min;Kim, Hyo-Gyeom;Joo, Gea-Jae;Kim, Ji Yoon;Kim, Hyun-Woo
    • Korean Journal of Ecology and Environment
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    • v.48 no.3
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    • pp.195-202
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    • 2015
  • We identified research trends for freshwater exotic species in South Korea using text mining methods in conjunction with bibliometric analysis. We searched scientific and common names of freshwater exotic species as searching keywords including 1 mammal species, 3 amphibian-reptile species, 11 fish species, 2 aquatic plant species. A total of 245 articles including research articles and abstracts of conference proceedings published by 56 academic societies and institutes were collected from scientific article databases. The search keywords used were the common names for the exotic species. The $20^{th}$ century (1900's) saw the number of articles increase; however, during the early $21^{st}$ century (2000's) the number of published articles decreased slowly. The number of articles focusing on physiological and embryological research was significantly greater than taxonomic and ecological studies. Rainbow trout and Nile tilapia were the main research topic, specifically physiological and embryological research associated with the aquaculture of these species. Ecological studies were only conducted on the distribution and effect of large-mouth bass and nutria. The ecological risk associated with freshwater exotic species has been expressed yet the scientific information might be insufficient to remove doubt about ecological issues as expressed by interested by individuals and policy makers due to bias in research topics with respect to freshwater exotic species. The research topics of freshwater exotic species would have to diversify to effectively manage freshwater exotic species.

Tree Growth and Ecosystem Conditions of Docheon Forest (Natural Monument No. 514) in Docheon-ri, Yeongdeok - Focusing on Plant Ecosystems - (천연기념물 제514호 영덕 도천리 도천숲의 생태계 현황 및 수목 생육 특성 - 식물생태계 현황을 중심으로 -)

  • Kim, Dong Wook;Hur, Bog Su;Lee, Seung Joo;Kim, Hyo Jeong
    • Korean Journal of Heritage: History & Science
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    • v.44 no.1
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    • pp.122-137
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    • 2011
  • The purpose of this study was to present the characteristics of tree growth and the status of the ecosystem in Yeongdeok Docheon-ri Docheon forest, which was designated as Natural Monument No. 514. Results showed that most of the soil properties were generally within desirable levels except for some properties. The forest was composed of 503 trees. Major trees included Zelkova serrata, Celtis sinensis, Cornus walteri, Diospyros lotus, Hemiptelea davidii, and Evodia daniellii. In particular, trees such as Zelkova serrata, Celtis sinensis, and Cornus walteri showed D.B.H ranging from 10cm to 70cm. These trees appeared to be major tree species since the beginning of Docheon forest's existence. The wild birds observed from the site were from 18 families, 20 species, and 95 individuals. Also were found 1 mammal species, 1 reptile species, and 1 amphibian species. A dead Aix galericulata (designated Natural Monument No. 327) was found in the forest. The annual tree diameter growth of the sample trees was 2.3mm per year on average. The average age of the overstory trees was approximately 101 years, and the oldest tree was estimated to be 300~400 years old.

Report on the Large Population and Habitat Status of Endangered Species, Mauremys reevesii Gray 1831 (Reptilia; Testudines; Geoemydidae) in South Korea (한국 내 멸종위기종 남생이 Mauremys reevesii Gray 1831 (Reptilia; Testudines; Geoemydidae)의 집단 서식 및 서식지 현황 보고)

  • Koo, Kyo Soung;Jang, Hoan-Jin;Kim, Dae-In;Kim, Su Hwan;Baek, Hae-Jun;Sung, Ha-Cheol
    • Korean Journal of Environment and Ecology
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    • v.33 no.4
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    • pp.402-407
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    • 2019
  • In this study, we investigated the habitat characteristics of a reservoir in Gyeongju City, Gyeongbuk, in which a large group of Mauremys reevesii (endangered species Class II and natural monument No. 453 in Korea) was discovered. We examined the biotic and abiotic factors that directly and indirectly threaten the survival of M. reevesii within the habitat. The reservoir where M. reevesii was discovered was built for agriculture and surrounded by submerged trees, dam, forests, reeds, and farmland (paddy field). All of the M. reevesii were found only in the submerged trees on the north side of the reservoir. We found 28 M. reevesii (8 juveniles) and 21 M. reevesii (16 juveniles) from field surveys on May 10th and August 9th, 2018, respectively. A number of red-eared sliders (Trachemys scripta elegans) and American bullfrogs (Rana catesbeiana), which threaten the survival of M. reevesii, were also found in and around the reservoir. Moreover, there were signs of excavation of cultural asset, chemical fertilizer, and household garbage, all of which are considered to be major threats to the survival of M. reevesii, all over the reservoir. Newborn turtles in this year were not observed. However, we estimated that natural breeding had sufficiently occurred since we observed many young turtles in the reservoir. Furthermore, the presence of young T. s. elegans individuals can be a persistent problem for M. reevesii as they are competing species. In conclusion, in-situ conservation method should be considered for protecting the endangered turtle and their habitat.

Distribution and Prediction Modeling of Snake Roadkills in the National Parks of South Korea: Odaesan National Park (오대산국립공원 내 뱀류 로드킬 분포현황 및 발생예측 모델링)

  • Kim, Seok-Bum;Park, Il-Kook;Park, Daesik
    • Korean Journal of Environment and Ecology
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    • v.36 no.5
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    • pp.460-467
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    • 2022
  • In this study, we collected snake roadkill data from 2006 to 2017 and developed a species distribution model to identify the pattern of snake roadkill and predict the potential hotspot of snake roadkill in the Odaesan National Park of South Korea. During the study period, snake roadkills occurred most frequently on the road, which passes through between forest and stream at an altitude of about 600 m. The modeling result showed that the occurrence probability of snake roadkill was high on a road with a gentle slope at a distance of 25 m from the stream and an altitude of 600 m. The most susceptible regions for snake roadkill in the Odaesan National Park were located on National Route 6, about 2.2 km and 11.7 km away from the southern border of the park, and on Local Road 446, 3.44 km away from the southern border of the park. The results of this study suggest that providing alternative basking places and eco-corridors and installing protection fences that block the inflow of snakes into roads, preferentially around roads and streams at an altitude lower than 700 m would be an effective way of reducing snake roadkill in the Odaesan National Park.

Social Relations between Individuals Based on Courtship and Attack Behaviors of Reeves' Turtle (Mauremys reevesii) in Captivity (사육 상태의 남생이(Mauremys reevesii)의 구애와 공격적 행동에 따른 개체 간 사회적 관계)

  • Ji-Won Kim;Hee-jin Kang;Seung-Min Park;Jae-Hyeok Choi;Du-Kang Jang;Seong-Ik Jo;Ha-Cheol Sung
    • Korean Journal of Environment and Ecology
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    • v.37 no.1
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    • pp.76-85
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    • 2023
  • This study aimed to understand social interactions by observing the courtship and attack behavior between individuals of 15 (6 females and 9 males) Reeves' turtle (Mauremys reevesii) in captivity in the Wolchulsan National Park. CCTV was installed in the study area from May 18, 2020 to October 19, 2020 and recorded 3 days a week (24 hours/day) for a total of 64 days and analyzed at intervals of 10 minutes per hour. Male turtle courtship was observed 884 times in total, with the heaviest females receiving the highest courtship frequency (357 times) and the smallest females receiving the least courtship (3 times). Of a total of observed 259 aggressive behaviors, 30 were for female to female, 81 for male to male, and 148 for female to male. Dominance hierarchy identified based on the result ranked females higher overall than males, and the larger the body, the higher the ranking. This study was the first in Korea to confirm individuals with high probability of reproduction through the frequency of courtship in the Reeves' turtle and investigate dominance hierarchy according to attack behavior. Our results can be used as reference behavioral data for managing and protecting the endangered Reeves' turtles and will help us understand their social structure.

Development of Urban Wildlife Detection and Analysis Methodology Based on Camera Trapping Technique and YOLO-X Algorithm (카메라 트래핑 기법과 YOLO-X 알고리즘 기반의 도시 야생동물 탐지 및 분석방법론 개발)

  • Kim, Kyeong-Tae;Lee, Hyun-Jung;Jeon, Seung-Wook;Song, Won-Kyong;Kim, Whee-Moon
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.26 no.4
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    • pp.17-34
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    • 2023
  • Camera trapping has been used as a non-invasive survey method that minimizes anthropogenic disturbance to ecosystems. Nevertheless, it is labor-intensive and time-consuming, requiring researchers to quantify species and populations. In this study, we aimed to improve the preprocessing of camera trapping data by utilizing an object detection algorithm. Wildlife monitoring using unmanned sensor cameras was conducted in a forested urban forest and a green space on a university campus in Cheonan City, Chungcheongnam-do, Korea. The collected camera trapping data were classified by a researcher to identify the occurrence of species. The data was then used to test the performance of the YOLO-X object detection algorithm for wildlife detection. The camera trapping resulted in 10,500 images of the urban forest and 51,974 images of green spaces on campus. Out of the total 62,474 images, 52,993 images (84.82%) were found to be false positives, while 9,481 images (15.18%) were found to contain wildlife. As a result of wildlife monitoring, 19 species of birds, 5 species of mammals, and 1 species of reptile were observed within the study area. In addition, there were statistically significant differences in the frequency of occurrence of the following species according to the type of urban greenery: Parus varius(t = -3.035, p < 0.01), Parus major(t = 2.112, p < 0.05), Passer montanus(t = 2.112, p < 0.05), Paradoxornis webbianus(t = 2.112, p < 0.05), Turdus hortulorum(t = -4.026, p < 0.001), and Sitta europaea(t = -2.189, p < 0.05). The detection performance of the YOLO-X model for wildlife occurrence was analyzed, and it successfully classified 94.2% of the camera trapping data. In particular, the number of true positive predictions was 7,809 images and the number of false negative predictions was 51,044 images. In this study, the object detection algorithm YOLO-X model was used to detect the presence of wildlife in the camera trapping data. In this study, the YOLO-X model was used with a filter activated to detect 10 specific animal taxa out of the 80 classes trained on the COCO dataset, without any additional training. In future studies, it is necessary to create and apply training data for key occurrence species to make the model suitable for wildlife monitoring.

Wetland Function Evaluation and Expert Assessment of Organic Rice-Fish Mixed Farming System (유기농 벼-담수어 복합영농의 습지기능평가 및 전문가 조사)

  • Nam, Hongsik;Park, Kwanglai;An, Nanhee;Lee, Sangmin;Cho, Junglai;Kim, Bongrae;Lim, Jongahk;Lee, Changwon;Choi, Seonu;Kim, Changhyun;Kong, Minjae;Son, Jinkwan
    • Journal of Wetlands Research
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    • v.20 no.2
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    • pp.161-172
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    • 2018
  • A mixed farming system that includes organic rice production and freshwater fish farming is being called into attention in Korean agricultural industry and rural areas in order to improve farm management and environmental conservation. This study was conducted to evaluate the environmental and ecological value of such mixed farming practices. Expert assessment and rapid assessment method (RAM) of wetland evaluation were employed for this study. Experts have responded that biodiversity conservation including amphibian and reptile habitat (2.39), aquatic insect habitat (2.36), Fishery habitat (2.34), vegetation diversity (2.13), avian habitat (2.05), and experience and education were the most important function of mixed farming. The wetland function evaluation conducted using modified RAM indicated that rice-fish mixed system showed improvements in most of the evaluated functions, compared to the conventional rice paddies. The overall wetland function of rice paddies in rice-fish mixed system was greatly improved as compared with the conventional rice paddies. Rice paddies are known to play an important role in biodiversity maintenance, and provide ecosystem services such as climate modulation and carbon reduction. Rice-fish mixed system of farming may not only improve various ecosystem services of rice paddies, but may increase farm income through value added fish farming, as well as promotion of social services such as education and maintenance of tradition. Additional research is needed for quantitative analysis of the values gained from the most improved wetland function when mixed farming system is actually put into practice, and to utilize the results in advertising of the organic rice, and in various sectors such as food, education and direct payment policy.

Patterns of Snake Roadkills on the Roads in the Northeast Region of South Korea (남한 동북부지역 도로에서 뱀류 로드킬의 양상)

  • Park, Daesik;Jeong, Soo-Min;Kim, Seung-Kyu;Ra, Nam-Yong;Lee, Jeong-Hyun;Kim, Ja-Kyeong;Kim, Il-Hun;Kim, Dae-In;Kim, Seok-Bum
    • Korean Journal of Environment and Ecology
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    • v.31 no.1
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    • pp.42-53
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    • 2017
  • One of the negative ecological effects following road construction is roadkill; animals die on the roads after being struck by vehicles. Roadkills have been a major concern in South Korea due to the large mountain areas in the country and have been mentioned as a causal factor for the decline in wildlife. Although snake roadkills frequently occur, as with mammals, birds, and amphibians, there are not many related studies done on snake roadkills. In this study, we determined snake roadkill patterns in the northeast part of South Korea including most of the Gangwon-do areas and parts of Gyeonggi-do, Chungcheongbuk-do, and Gyeongsangbuk-do by analyzing the snake roadkills found between May 2007 and Aug 2012. We identified a total of 155 roadkilled snakes from 10 different species. Red-sided water snake (Rhabdophis tigrinus), Red-tongue viper snake (Gloydius ussuriensis), Cat snake (Elaphe dione), Red-banded snake (Dinodon rufozonatus), and Viper snake (Gloydius brevicaudus) accounted for more than 90% of the total cases. It was found that more active forager snakes were killed than sit-and-wait foragers, more male snakes were killed than female snakes, and more adult snakes were killed than subadult snakes. The snake roadkill frequency was the highest in September between the altitudes of 200 and 400 m, and on roads between either a mountain and a body of water or between a mountain and a crop field. Our results are expected to enhance the understanding of snake roadkills in general and to determine the areas, specific sites and species for planning projects for snake roadkill reduction in the northeast of South Korea.

A study on ecological reprocessing and creation of biotope by reuse of treated waste water and nonpoint pollution source of stream (하수처리수와 하천 비점오염원을 이용한 생태적 재처리 효과와 생물 서식처 창출 방안 - 왕포천 생태적수질정화비오톱(Sustainable Structured wetland Biotop) 시스템 사례를 중심으로 -)

  • Byeon, ChanWoo;Lee, JongnChan
    • Journal of Wetlands Research
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    • v.21 no.4
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    • pp.374-383
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    • 2019
  • The Wangpo stream located in the Buyeo-gun was a small stream with both low water quality and quantity due to the cultivated land and settlement area through the stream. In order to restore ecosystem, the Sustainable Structured wetland Biotop system was applied to treat 1,500 to 7,000 ㎥/d amount of effluent water pumped from the Buyeo sewage treatment plant facility as well as inflowed from nonpoint pollution source of Wangpo stream. As a result of continuous monitoring for 2 years from 2016 to 2018 after completing restorative construction, the average BOD5 as an index of organic pollution was 7.3 mg/L and the average effluent concentration became 2.1 mg/L, showing an improvement by 71.2%. The average inflow concentration of T-N was 7.953 mg/L and the average outflow concentration was 3.379 mg/L, showing 57.5% of improvement. The average inflow concentration of T-P was 0.177 mg/L and the average outflow concentration was 0.052 mg/L, showing about 70.7% improvement. The results of ecological monitoring after creating biotope by reuse of treated waste water and nonpoint pollution source of the Wangpo Stream are as follows. The plant taxa founded in water SSB(Sustainable Structured wetland Biotop) system of the Wangpo Stream was total 41 species in 21 families, showing a higher proportion of naturally introduced plant than that of artificially planted species. In case of other terrestrial animals, both amphibian and reptile group were confirmed as 3 species in 6 families, avian group was 25 species of 15 families, and mammal group observed 5 species in 5 families, respectively. All species have been created and enhanced through purified water inhabited in the SSB(Sustainable Structured wetland Biotop) system as a treatment wetland, eventually migrating to the Wangpo Stream.