• 제목/요약/키워드: relative quantitative real-time PCR

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Five miRNAs as Novel Diagnostic Biomarker Candidates for Primary Nasopharyngeal Carcinoma

  • Tang, Jin-Feng;Yu, Zhong-Hua;Liu, Tie;Lin, Zi-Ying;Wang, Ya-Hong;Yang, La-Wei;He, Hui-Juan;Cao, Jun;Huang, Hai-Li;Liu, Gang
    • Asian Pacific Journal of Cancer Prevention
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    • 제15권18호
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    • pp.7575-7581
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    • 2014
  • MicroRNAs (miRNAs) play an essential role in the development and progression of nasopharyngeal carcinomas (NPC). Despite advances in the field of cancer molecular biology and biomarker discovery, the development of clinically validated biomarkers for primary NPC has remained elusive. In this study, we investigated the expression and clinical significance of miRNAs as novel primary NPC diagnostic biomarkers. We used an array containing 2, 500 miRNAs to identify 22 significant miRNAs, and these candidate miRNAs were validated using 67 fresh NPC and 25 normal control tissues via quantitative real-time PCR (qRT-PCR). Expression and correlation analyses were performed with various statistical approaches, in addition to logistic regression and receiver operating characteristic curve analyses to evaluate diagnostic efficacy. qRT-PCR revealed five differentially expressed miRNAs (miR-93-5p, miR-135b-5p, miR-205-5p and miR-183-5p) in NPC tissue samples relative to control samples (p<0.05), with miR-135b-5p and miR-205-5p being of significant diagnostic value (p<0.01). Moreover, comparison of NPC patient clinicopathologic data revealed a negative correlation between miR-93-5p and miR-183-5p expression levels and lymph node status (p<0.05). These findings display an altered expression of many miRNAs in NPC tissues, thus providing information pertinent to pathophysiological and diagnostic research. Ultimately, miR-135b-5p and miR-205-5p may be implicated as novel NPC candidate biomarkers, while miR-93-5p, miR-650 and miR-183-5p may find application as relevant clinical pathology and diagnostic candidate biomarkers.

Expression of Glypican-3 in Mouse Embryo Stem Cells and its Derived Hepatic Lineage Cells Treated with Diethylnitrosamine in vitro

  • Kim, Young Hee;Kang, Jin Seok
    • Asian Pacific Journal of Cancer Prevention
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    • 제14권11호
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    • pp.6341-6345
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    • 2013
  • To clarify the role of stem cells in hepatocarcinogenesis, glypican-3 (GPC-3) and E-cadherin expression was investigated in embryonic cell lineages. Mouse embryonic stem cells (ESCs), hepatic progenitor cells (HPCs) and hepatocyte like cells (HCs), representing 0, 22 and 40 days of differentiation, respectively, were treated in vitro with diethylnitrosamine (DEN) at four doses (0, 1, 5 and 15 mM; G1, G2, G3 and G4, respectively) for 24 h and GPC-3 and E-cadherin expression was examined by relative quantitative real-time PCR and immunocytochemistry. GPC-3 mRNA expression was significantly different for G4 at day 0 (p<0.001) and for G4 at day 22 (p<0.01) compared with the control (G1). E-cadherin mRNA expression was significantly different for G3 and G4 at day 0 (p<0.05 and p<0.001, respectively), for G2 and G4 (p<0.05 and p<0.001, respectively) at day 22 and for G2 and G4 (p<0.01 and p<0.001, respectively) at day 40 compared with G1. Immunofluorescence staining for GPC-3 showed a membranous and/or granular expression in cytoplasm of ESCs and HPCs and granular and/or diffuse expression in cytoplasm of HCs, which were also stained by E-cadherin. DEN treatment increased GPC-3 expression in ESCs, HPCs and HCs, with increase of E-cadherin expression. Taken together, the expression of GPC-3 was altered by DEN treatment. However, its expression pattern was different at the stage of embryo stem cells and its derived hepatic lineage cells. This suggests that GPC-3 expression may be modulated in the progeny of stem cells during their differentiation toward hepatocytes, associated with E-cadherin expression.

Identification and Characterization of Expansins from Bursaphelenchus xylophilus (Nematoda: Aphelenchoididae)

  • Lee, Dae-Weon;Seo, Jong Bok;Kang, Jae Soon;Koh, Sang-Hyun;Lee, Si-Hyeock;Koh, Young Ho
    • The Plant Pathology Journal
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    • 제28권4호
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    • pp.409-417
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    • 2012
  • We identified two novel expansin (EXP) genes in the expressed sequence tag database of Bursaphelenchus xylophilus, designated as Bx-EXPB2 and -EXPB3. Novel Bx-EXPBs encoded 150 amino acids and their similarities in coding sequence were 70.7-84.0% to the previously reported EXPB1 of B. xylophilus. Bx-EXPB2 and Bx-EXPB3 were clustered with Bx-EXPB1 and Bm-EXPB1, respectively, forming the independent phylogeny with other nematode EXPs. All identified Bx-EXPBs contained the signal peptide and were only expressed during the propagative stage, suggesting that they are secreted to facilitate nematode migration through hosts by loosening cell walls during infection. Quantitative real-time PCR analysis showed that the relative accumulation of Bx-EXPB3 mRNAs was the highest among the three Bx-EXPs examined and the order of mRNA accumulation was as follows: Bx-EXPB3 > Bx-EXPB2 >> Bx-EXPB1. Homology modeling of Bx-EXPBs showed that the structurally optimum template was EXLX1 protein of Bacillus subtilis, whichshared residues essential for catalytic activity with Bx-EXPB1 and Bx-EXPB2 except for Bx-EXPB3. Taken together, Bx-EXPB1 and Bx-EXPB2 may be involved migration through plant tissues and play a role in pathogenesis.

MicroRNA-101 Inhibits Cell Proliferation, Invasion, and Promotes Apoptosis by Regulating Cyclooxygenase-2 in Hela Cervical Carcinoma Cells

  • Huang, Fei;Lin, Chen;Shi, Yong-Hua;Kuerban, Gulinar
    • Asian Pacific Journal of Cancer Prevention
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    • 제14권10호
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    • pp.5915-5920
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    • 2013
  • Aim: Although aberrant miRNA expression has been documented, altered miR-101 expression in cervical cancer and its carcinogenic effects and mechanisms remain unexplored. The aim of our study was to investigate the role of miR-101 alteration in cervical carcinogenesis. Methods: Expression of miR-101 was examined by quantitative real-time reverse transcriptase PCR (qRT-PCR) in Hela cells. After modulating miR-101 expression using miR-101 mimics, cell growth, apoptosis and proliferation, and migration were tested separately by MTT or flow cytometry and cell wound healing assay and protein expression was detected by qRT-PCR. The expression of COX-2 in Hela cell was also examined by immunohistochemical staining and the correlation with miR-101 expression was analysed. Results: The miR-101 demonstrated significantly low expression in Hela cell. When we transfected miR-101 mimics into Hela cells, the modulation of miR-101 expression remarkably influenced cell proliferation, cycling and apoptosis: 1) The expression of microRNA-101 tended to increase after transfection; 2) Overexpression of miR-101 was able to promote cell apoptosis, the apoptosis rate being markedly higher (97.6%) than that seen pre-transfection (12.2%) (P<0.05); 3) The miR-101 negatively regulates cell migration and invasion, scratch results being lower ($42.7um{\pm}2um$) than that observed pre-transfection ($181.4um{\pm}2um$); 4) miRNA-101 inhibits the proliferation of Hela cells as well as the level of COX-2 protein, which was negatively correlated with miR-101 expression. Conclusions: Overexpression of miR-101 has obvious inhibitory effects on cell proliferation, migration and invasion. Thus reduced miR-101 expression could participate in the development of cervical cancer at least partly through loss of inhibition of target gene COX-2, which probably occurs in a relative late phase of carcinogenesis. Our data suggest an important role of miR-101 in the molecular etiology of cancer and indicate potential application of miR-101 in cancer therapy.

Dysregulation of MicroRNA-196b-5p and MicroRNA-375 in Gastric Cancer

  • Lee, Seung Woo;Park, Ki Cheol;Kim, Jeong Goo;Moon, Sung Jin;Kang, Sang Bum;Lee, Dong Soo;Sul, Hae Joung;Ji, Jeong Seon;Jeong, Hyun Yong
    • Journal of Gastric Cancer
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    • 제16권4호
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    • pp.221-229
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    • 2016
  • Purpose: Dysregulated microRNAs (miRNAs) can contribute to cancer development by leading to abnormal proliferation of cells, apoptosis, and differentiation. Although several miRNAs that are related to gastric cancer have been identified, the reported results have been inconsistent. The aim of this study was to determine miRNA expression profiles and validate miRNAs up- and down-regulated in gastric cancer. Materials and Methods: We evaluated 34 primary gastric cancer tissues and paired adjacent nontumorous gastric tissues. Total RNA was extracted, and low-molecular-weight RNAs (<200 nucleotides) were isolated for further analysis. Two pairs of tissues were processed for GeneChip microarray analysis, and the identified up- and down-regulated miRNAs were validated by real-time quantitative polymerase chain reaction (qPCR). Results: In the set of differentially expressed miRNAs, 5 were overexpressed by more than 2 fold, and 5 were reduced by 2 fold or less in gastric cancer tissues compared with normal gastric tissues. Four of these miRNAs (miR-196b-5p, miR-375, miR-483-5p, and miR-486-5p) were then validated by qPCR, and the relative expression levels of 2 miRNAs (miR-196b-5p and miR-375) were significantly different between cancer and normal tissues. Conclusions: Our results revealed that the expression of miR-196b-5p and miR-375 significantly correlates with gastric cancer. These miRNAs could therefore serve as diagnostic biomarkers of gastric cancer.

비소세포 폐암환자의 객담 내 ERCC1 발현정도와 cisplatin 복합화학요법 후 치료반응 (Relation between ERCC1 Expression in Sputum and Survival after Cisplatin-Based Chemotherapy in Patients with Non-Small Cell Lung Cancer)

  • 양성우;최평락;류홍준;김진구;옥철호;장태원;정만홍
    • Tuberculosis and Respiratory Diseases
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    • 제60권2호
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    • pp.151-159
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    • 2006
  • 목 적 : 폐암치료에 가장 널리 사용되는 cisplatin은 DNA와 결합하여 DNA 복제를 방해한다. 이렇게 손상된 부위를 복구하는 과정에 excision repair cross complementing gene 1 (ERCC1)이 작용한다. ERCC1이 활성화 되면, 정상세포는 DNA 손상을 줄일 수 있지만 종양세포의 경우 cisplatin의 효과는 감소하게 된다. 비소세포 폐암(non-small cell lung cancer, NSCLC) 환자에서 cisplatin을 포함하는 화학치료를 할 경우 예후인자로서 객담 ERCC1 정량측정의 의의를 조사하였다. 대상 및 방법 : 2001년 4월부터 2003년 8월 사이에 NSCLC로 진단되어 cisplatin과 taxane계(33명) 혹은 cisplatin과 gemcitabine(34명) 복합 화학치료를 받은 환자를 대상으로 하였다. 기관지 내시경검사를 실시한 후에 즉각 채취한 객담을 처리하여 c-DNA를 분리한 후, 객담속의 종양특이 유전자인 melanoma antigen gene (MAGE) 발현 여부는 RT-PCR로, ERCC1의 상대적 정량적 측정은 real-time PCR로 하였다. 환자의 치료반응 및 생존기간과 MAGE 발현여부 및 ERCC1의 발현정도와의 상관관계를 조사하였다. 결 과 : 객담에서 MAGE는 40.2%, ERCC1은 74.6%에서 발현되었다. ERCC1이 중앙값 이상인 경우와 미만인 군으로 나눠서 비교한 결과 ERCC1이 증가된 군의 중앙생존기간이 84주로 미만인 군의 44주보다 길었다(P=0.017). Taxane계를 사용한 군의 중앙생존기간이 79주로 gemcitabine 사용군의 47주에 비해 길었다(P=0.03). MAGE의 발현 여부는 생존기간과 유의한 관계는 없었으나, MAGE 발현군에서 ERCC1이 유의하게 증가되어 있었다(P=0.003). MAGE가 발현되지 않고 ERCC1이 증가된 군의 중앙생존기간은 103주로 그렇지 않은 군의 43주보다 길었고(P=0.008), MAGE가 발현된 경우는 두 군 간에 차이가 없었다(각각 62주 및 44주, P=0.348). 결 론 : NSCLC 환자의 객담에서 ERCC1을 정량 측정하는 것이 화학치료를 받는 환자의 생존기간을 예측하는 한 인자로 유용할 것으로 추정된다.

Bacillus subtilis HJ18-4를 이용하여 제조한 메밀 속성장의 품질특성 (Quality characteristics of buckwheat Soksungjang manufactured by Bacillus subtilis HJ18-4)

  • 박나영;이선영;김지연;최혜선
    • 한국식품저장유통학회지
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    • 제20권5호
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    • pp.699-704
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    • 2013
  • 메밀 속성장은 메밀과 콩으로 제조된 별미장이다. 항균 및 효소활성이 우수한 B. subtilis HJ18-4 균주를 starter로 사용하여 메밀 속성장을 제조하였다. 메밀 속성장 제조과정 중, starter 첨가 시기는 메주 제조단계(Treat-1) 및 염수 첨가단계(Treat-2)로 접종시기를 달리하였다. 발효 중 아미노태질소 함량, 환원당, 효소활성(protease, amylase)의 이화학적 품질특성과 총균 수, 유산균 수 및B. cereus 양 변화 등의 미생물학적 특성을 분석하였다. 그 결과, 총균 수는 발효 15일부터 7~8 log CFU/mL로 증가되었고 아미노태 질소함량은 발효기간 동안 65.38~202.52 mg%로 증가되었다. 반면, 환원당과 효소활성(amylase, protease)은 모든 처리구 에서 감소하였다. 발효기간 중 PlcR 발현에 미치는 영향을 측정한 결과, Treat-1 처리구에서 발효 23일 이후 검출되지 않았다. 메주 제조단계에서 B. subtilis HJ18-4를 접종한 Treat-1이 발효관련 이화학적 특성과B. cereus 저해효과가 우수하였다. 단일 균을 접종하여 제조되는 개량식장 제조 시, 자연발효에 제조된 장의 품질을 재현하기가 매우 어려운 실정이다. 본 연구는 자연발효방법으로 제조되는 메밀 속성장에 항균 및 효소활성이 우수한B. subtilis HJ18-4 균주를 스타터 적용하여 장류 품질개선 방법을 제시하였다.

Comparisons of Developmental Potential and Gene Expression Level in Porcine Nuclear Transfer, Parthenogenetic and Fertilized Embryos

  • Kim Jung-Gon;Kumar B. Mohana;Cho Sung-Keun;Ock Sun-A;Jeon Byeong-Gyun;Balasubramanian S.;Rho Gyu-Jin;Choe Sang-Yong
    • Reproductive and Developmental Biology
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    • 제30권2호
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    • pp.125-133
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    • 2006
  • This study was conducted to detect the apoptosis incidence in blastocysts and to compare the abundance of Bax, Bcl2L1, VEGF and FGFR2 in in vitro fertilized (IVF), parthenogenetic (PAT) and nuclear transfer (NT) embryos. Oocytes matured for 40 hr were enucleated and reconstructed with confluenced fetal fibroblasts (FFs) derived from a ${\sim}45$ day fetus. Reconstructed eggs were then fused with 2 DC pulses (2.0 kV/cm, $30{\mu}sec$) and cultured with $7.5{\mu}g/ml$ cytochalasin B for 3 hr. Parthenotes (PAT) were produced with the same electric strength and culture for NT eggs. The embryos were cultured in NCSU-23 medium at $39^{\circ}C,\;5%\;CO_2,\;5%\l;O_2$ in air. In 3 runs, set of 10 embryos at the 4-cell to blastocyst stages were used to extract total RNA for analyzing the gene expression patterns of pro-apoptotic (Bax), anti-apoptotic (Bcl2L1), vasculogenesis (VEGF), implantation (FGFR2III) using real-time quantitative PCR. Cleavage and blastocyst rates were significantly higher (P<0.05) in IVF and PAT ($79.3{\pm}8.5\;and\;25.5{\pm}6.1,\;and\;85.0{\pm}6.4\;and\;38.6{\pm}5.5$, respectively)than NT counterparts ($65.1{\pm}5.2\;and\;15.6{\pm}3.0$, respectively). Significantly higher (P<0.05) total cells were observed in IVF controls and PAT ($34.7{\pm}5.8\;and\;38.1{\pm}4.1$) than NT embryos ($24.8{\pm}3.2$). Apoptosis index was significantly lower (P<0.05) in IVF than NT embryos. The Relative abundances (RA) of Bax and VEGF were significantly higher (P<0.05) at blastocyst stage in NT than IVF control. The RA of Bcl2L1 and FGFR2III were significantly higher (P<0.05) at blastocyst stage in IVF than NT. The present study observed the abnormal gene expressions in NT embryos at various developmental stages, suggesting certain clues to find out the cause of the low efficiency of NT to term.

Effect of trans-10, cis-12 Conjugated Linoleic Acid on Production of Prostaglandin E2, Cyclooxygenase-2 and 5-lipoxygenase in Lipopolysaccharide-Stimulated Porcine Peripheral Blood Mononuclear Cells

  • Seo, Hae-Ryun;Ahn, Changhwan;Kang, Byeong-Teck;Kang, Ji-Houn;Jeung, Eui-Bae;Yang, Mhan-Pyo
    • 한국임상수의학회지
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    • 제33권4호
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    • pp.194-199
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    • 2016
  • The objective of this study was to examine the effect of trans-10, cis-12 conjugated linoleic acid (t10c12-CLA) on the expression of cyclooxygenase-2 (COX-2) and 5-lipoxygenase (5-LOX) pathway in lipopolysaccharide (LPS)-stimulated porcine peripheral blood mononuclear cells (PBMCs). t10c12-CLA was treated with different concentrations in culture medium of LPS$na{\ddot{i}}ve$ and LPS-stimulated PBMCs. The mRNA expressions of prostaglandin $E_2$ ($PGE_2$)-synthase, COX-2 and 5-LOX were measured using quantitative real-time PCR. In addition, the production levels of $PGE_2$ and 5-LOX in culture supernatant from PBMCs with or without LPS were assessed by ELISA. In LPS$na{\ddot{i}}ve$ PBMCs, treatment of t10c12-CLA significantly (p < 0.05) increased the mRNA expressions of PGE2 synthase and 5-LOX compared to vehicle control. Expression of COX-2 mRNA did not show significant difference compared to vehicle control by t10c12-CLA treatment in LPS$na{\ddot{i}}ve$ PBMCs. However, the addition of LPS in PBMCs markedly (p < 0.05) increased the mRNA expression of COX-2, $PGE_2$ synthase and 5-LOX, and also significantly (p < 0.05) enhanced the production of $PGE_2$ and 5-LOX relative to LPS$na{\ddot{i}}ve$ PBMCs, respectively. However, the addition of t10c12-CLA significantly (p < 0.01) suppressed the LPS-induced excessive expression of COX-2, $PGE_2$ synthase, and 5-LOX compared to those of PBMCs treated with LPS alone. The production levels of $PGE_2$ and 5-LOX in culture supernatant from LPS-stimulated PBMCs were also significantly (p < 0.05) inhibited by the treatment of t10c12-CLA compared to LPS alone. These results suggested that t10c12-CLA has an anti-inflammatory effect via dual inhibition of COX-2 and 5-LOX with gene expression and production level in LPS-stimulated porcine PBMCs. Therefore, it was thought that t10c12-CLA can attenuate the inflammatory response by down-regulation of eicosanoids production.

Lactobacillus bifermentans로 발효한 율피의 항아토피 효과 (Anti-atopic Effects of Castanea crenata Inner Shell Extracts Fermented by Lactobacillus bifermentans)

  • 김배진;손우림;최미옥;조성경;정희경;이진태;김학윤;권대준
    • 한국식품영양과학회지
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    • 제42권9호
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    • pp.1378-1386
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    • 2013
  • 본 연구에서는 DNCB 도포를 통해 아토피 피부염을 유발시킨 NC/Nga mice에 율피 발효물을 각각 0.1%, 1%, 5%로 도포하고 항아토피 효능을 평가하였다. 율피 발효물의 유효성분은 HPLC 분석 결과, gallic acid와 ellagic acid가 각각 10.18 mg/g, 2.14 mg/g 함량을 나타내었다. 실험군 간의 유의적 체중 변화는 관찰되지 않았으며, 육안 평가를 통해 홍반, 가려움과 피부건조, 부종과 혈종, 짓무름 그리고 태선화와 같은 일반적인 아토피 피부염 증상의 심각도를 측정한 점수 결과에서는 DNCB 도포를 통해 아토피 피부염을 유발한 atopic dermatitis(AD)군($13.17{\pm}0.40$)과 비교 시, 아토피 피부염 유발 후 5% 율피 발효물을 도포한 fermented Castanea crenata inner shell(FCS) 5군에서 $7.50{\pm}0.43$ 으로 나타나 아토피 피부염 증상이 빠르게 개선되는 것을 확인하였다(P<0.01). 피부 측정 기기인 MPA5 580을 이용하여 피부멜라닌지수, 피부홍반지수, 피부수분지수를 측정한 결과, AD군은 각각 $296.61{\pm}8.11$, $264.33{\pm}10.15$, $3.15{\pm}0.54$를 나타내었으며 FCS 5군은 각각 $105.86{\pm}2.92$, $199.56{\pm}4.22$, $17.62{\pm}1.75$로 개선효과가 유의적으로 나타났다(P<0.05). 각 실험군 mice의 면역반응을 확인하기 위해 비장 무게(mg)를 체중(g)으로 나누어 산출한 비장 수치의 경우, 아토피 피부염 유발로 인해 AD군에서 증가된 비장 수치($5.55{\pm}0.31$)가 FCS 0.1군, FCS 1군, FCS 5군에서는 각각 $4.53{\pm}0.24$, $3.80{\pm}0.40$, $3.32{\pm}0.24$로 나타나 율피 발효물의 도포 농도에 의존적으로 감소되는 경향을 나타냈으며 특히 FCS 5군에서는 유의적으로 낮게 나타났다(P<0.05). 이는 율피 발효물이 아토피 피부염 상태에서 증가된 비장 내 T-림프구를 효과적으로 억제할 수 있음을 나타낸다. Quantitative real-time PCR을 통해 피부조직에서 IL-$1{\beta}$, TNF-${\alpha}$와 같은 염증 유전자의 발현 변화를 분석한 결과, 두 유전자 모두 정상군의 relative quantification값이 1일 때 AD군은 각각 1.30, 1.26으로 증가되었으며 FCS 5군에서는 1.11, 0.93으로 나타나 율피 발효물 도포에 의한 유의적인 감소(P<0.05)를 확인할 수 있었다. 아토피 피부염의 면역학적 지표인 혈청 내 IgE 함량을 분석한 결과에서는 각 실험군 간의 유의적 차이는 보이지 않았으나 AD군($1,628.71{\pm}202.59ng/mL$)과 비교 시, 율피 발효물을 도포한 FCS 0.1군, FCS 1군, FCS 5군에서 각각 $1,530.15{\pm}198.70ng/mL$, $1,462.15{\pm}83.79ng/mL$, $1,187.47{\pm}140.09ng/mL$로 나타나 율피 발효물 도포에 의해 감소되는 경향을 확인할 수 있었다. 따라서 율피 발효물은 아토피 피부염 증상 개선을 위한 기능성 천연물의 소재로 활용될 수 있을 것이라 생각된다.