• 제목/요약/키워드: recombination time

검색결과 157건 처리시간 0.022초

Predicting the Accuracy of Breeding Values Using High Density Genome Scans

  • Lee, Deuk-Hwan;Vasco, Daniel A.
    • Asian-Australasian Journal of Animal Sciences
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    • 제24권2호
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    • pp.162-172
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    • 2011
  • In this paper, simulation was used to determine accuracies of genomic breeding values for polygenic traits associated with many thousands of markers obtained from high density genome scans. The statistical approach was based upon stochastically simulating a pedigree with a specified base population and a specified set of population parameters including the effective and noneffective marker distances and generation time. For this population, marker and quantitative trait locus (QTL) genotypes were generated using either a single linkage group or multiple linkage group model. Single nucleotide polymorphism (SNP) was simulated for an entire bovine genome (except for the sex chromosome, n = 29) including linkage and recombination. Individuals drawn from the simulated population with specified marker and QTL genotypes were randomly mated to establish appropriate levels of linkage disequilibrium for ten generations. Phenotype and genomic SNP data sets were obtained from individuals starting after two generations. Genetic prediction was accomplished by statistically modeling the genomic relationship matrix and standard BLUP methods. The effect of the number of linkage groups was also investigated to determine its influence on the accuracy of breeding values for genomic selection. When using high density scan data (0.08 cM marker distance), accuracies of breeding values on juveniles were obtained of 0.60 and 0.82, for a low heritable trait (0.10) and high heritable trait (0.50), respectively, in the single linkage group model. Estimates of 0.38 and 0.60 were obtained for the same cases in the multiple linkage group models. Unexpectedly, use of BLUP regression methods across many chromosomes was found to give rise to reduced accuracy in breeding value determination. The reasons for this remain a target for further research, but the role of Mendelian sampling may play a fundamental role in producing this effect.

Expression of Immune-Related Genes during Loach (Misgurnus anguillicaudatus) Embryonic and Early Larval Development

  • Lee, Jang Wook;Kim, Jung Eun;Goo, In Bon;Hwang, Ju-Ae;Im, Jea Hyun;Choi, Hye-Sung;Lee, Jeong-Ho
    • 한국발생생물학회지:발생과생식
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    • 제19권4호
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    • pp.181-187
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    • 2015
  • Early life stage mortality in fish is one of the problems faced by loach aquaculture. However, our understanding of immune system in early life stage fish is still incomplete, and the information available is restricted to a few fish species. In the present work, we investigated the expression of immune-related transcripts in loach during early development. In fishes, recombination-activating gene 1 (RAG-1) and sacsin (SACS) have been considered as immunological function. In this study, the expression of the both genes was assessed throughout the early developmental stages of loach using real-time PCR method. maRAG-1 mRNA was first detected in 0 dph, observed the increased mostly until 40 dph. Significant expression of maRAG-1 was detected in 0 to 40 dph. These patterns of expression may suggest that the loach start to develop its function after hatching. On the other hand, maSACS was detected in unfertilized oocyte to molura stages and 0 to 40 dph. maSACS mRNA transcripts were detected in unfertilized oocytes, suggesting that they are maternally transferred.

Efficient Production of loxP Knock-in Mouse using CRISPR/Cas9 System

  • Jung, Sundo
    • 대한의생명과학회지
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    • 제26권2호
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    • pp.114-119
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    • 2020
  • Of the various types of mice used for genome editing, conditional knock-out (cKO) mice serve as an important model for studying the function of genes. cKO mice can be produced using loxP knock-in (KI) mice in which loxP sequences (34 bp) are inserted on both sides of a specific region in the target gene. These mice can be used as KO mice that do not express a gene at a desired time or under a desired condition by cross-breeding with various Cre Tg mice. Genome editing has been recently made easy by the use of third-generation gene scissors, the CRISPR-Cas9 system. However, very few laboratories can produce mice for genome editing. Here we present a more efficient method for producing loxP KI mice. This method involves the use of an HDR vector as the target vector and ssODN as the donor DNA in order to induce homologous recombination for producing loxP KI mice. On injecting 20 ng/µL of ssODN, it was observed that the target exon was deleted or loxP was inserted on only one side. However, on injecting 10 ng/µL of the target HDR vector, the insertion of loxP was observed on both sides of the target region. In the first PCR, seven mice were identified to be loxP KI mice. The accuracy of their gene sequences was confirmed through Sanger sequencing. It is expected that the loxP KI mice produced in this study will serve as an important tool for identifying the function of the target gene.

컨버전스와 디버전스 특성에 관한 연구 -패션마켓 사례를 중심으로- (A Study of Convergence and Divergence Characteristics -Case Study of Fashion Market-)

  • 박연진;이영재
    • 패션비즈니스
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    • 제22권5호
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    • pp.64-82
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    • 2018
  • As sustainability of fashion brands is becoming more important in the prolonged depression, the fashion market is also seeking ways to create new value through convergence with various fields. In the fashion market, convergence marketing is engaged with diverse technologies combined with advanced technologies and strategies. This study established the conceptual characteristics of convergence and divergence from a market perspective. Convergence can be summarized as Borderless, Compounding, Diversification, Recombination and Affiliation. The conceptual characteristics of the divergence can be summarized as de-fusion, individualization, differentiation, specialization, and segmentation. The characteristics of convergence revealed through the case of fashion market include the expandability of the new category, the expandability of the consumer, the brand experience, and the expandability of time and space. Divergence is the differentiation of brand value, target customer, and product nature. Through this study, we could understand the differentiation of the fashion market and the direction of the marketing strategy by looking at the characteristic of the convergence marketing - oriented research that has the contrary conceptual characteristics from the extended viewpoint. Based on this, it is possible to see the changes and patterns of brand marketing strategies and techniques in recent fashion market. In the future, it is expected that the systematic study of the marketing strategy of the domestic fashion brand based on the convergence and change characteristics of the fashion market proposed in this study will continue.

Whole-Genome Characterization of Alfalfa Mosaic Virus Obtained from Metagenomic Analysis of Vinca minor and Wisteria sinensis in Iran: with Implications for the Genetic Structure of the Virus

  • Moradi, Zohreh;Mehrvar, Mohsen
    • The Plant Pathology Journal
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    • 제37권6호
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    • pp.619-631
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    • 2021
  • Alfalfa mosaic virus (AMV), an economically important pathogen, is present worldwide with a very wide host range. This work reports for the first time the infection of Vinca minor and Wisteria sinensis with AMV using RNA sequencing and reverse transcription polymerase chain reaction confirmation. De novo assembly and annotating of contigs revealed that RNA1, RNA2, and RNA3 genomic fragments consist of 3,690, 2,636, and 2,057 nucleotides (nt) for IR-VM and 3,690, 2,594, and 2,057 nt for IR-WS. RNA1 and RNA3 segments of IR-VM and IR-WS closely resembled those of the Chinese isolate HZ, with 99.23-99.26% and 98.04-98.09% nt identity, respectively. Their RNA2 resembled that of Canadian isolate CaM and American isolate OH-2-2017, with 97.96-98.07% nt identity. The P2 gene revealed more nucleotide diversity compared with other genes. Genes in the AMV genome were under dominant negative selection during evolution, and the P1 and coat protein (CP) proteins were subject to the strongest and weakest purifying selection, respectively. In the population genetic analysis based on the CP gene sequences, all 107 AMV isolates fell into two main clades (A, B) and isolates of clade A were further divided into three groups with significant subpopulation differentiation. The results indicated moderate genetic variation within and no clear geographic or genetic structure between the studied populations, implying moderate gene flow can play an important role in differentiation and distribution of genetic diversity among populations. Several factors have shaped the genetic structure and diversity of AMV: selection, recombination/reassortment, gene flow, and random processes such as founder effects.

디지털 합금 InGaAlAs 다중 양자 우물의 열처리 온도에 따른 발광 특성 (Effect of Annealing Temperature on the Luminescence Properties of Digital-Alloy InGaAlAs Multiple Quantum Wells)

  • 조일욱;변혜령;류미이;송진동
    • 한국진공학회지
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    • 제22권6호
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    • pp.321-326
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    • 2013
  • 디지털 합금(digital alloy) InGaAlAs 다중 양자 우물(multiple quantum wells: MQWs) 구조의 열처리(rapid thermal annealing: RTA) 온도에 따른 발광 특성을 PL (photoluminescence)와 TRPL (time-resolved PL)를 이용하여 분석하였다. $700^{\circ}C$에서 $850^{\circ}C$까지 온도를 변화시켜 RTA한 디지털 합금 MQWs의 PL 결과는 $750^{\circ}C$에서 RTA한 시료가 가장 강한 PL 세기와 가장 좁은 반치폭을 나타내었다. 이것은 $750^{\circ}C$에서 30초 동안 RTA하였을 때 비발광 재결합 센터가 감소하고 가장 매끄러운 경계면이 형성되는 것을 나타낸다. RTA 온도를 $800^{\circ}C$$850^{\circ}C$로 증가하였을 때 PL 피크는 청색편이 하였으며 PL 세기는 감소하였다. PL 피크의 청색편이는 RTA 온도가 증가함에 따라 InGaAs/InAlAs SPS (short-period superlattice)의 경계면에서의 Ga과 Al의 혼합(intermixing)으로 Al 함량이 증가한 것으로 설명되며, PL 세기의 감소는 경계면의 거칠기의 증가와 인듐의 상분리(phase separation)로 인한 비균일 조성(compositional fluctuation)으로 설명된다. RTA 온도를 증가하였을 때 PL 소멸시간은 증가하였으며, 이것은 비발광 재결합 센터(결정 결함)가 감소한 것을 나타낸다. 디지털 합금 InGaAlAs MQWs 시료의 PL 특성은 적절한 RTA 조건에서 현저히 향상되는 것을 확인하였다.

Mixde-mode simulation을 이용한 4H-SiC DMOSFETs의 계면상태에서 포획된 전하에 따른 transient 특성 분석 (Mixed-mode simulation of transient characteristics of 4H-SiC DMOSFETs - Impact off the interface changes)

  • 강민석;최창용;방욱;김상철;김남균;구상모
    • 한국전기전자재료학회:학술대회논문집
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    • 한국전기전자재료학회 2009년도 추계학술대회 논문집
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    • pp.55-55
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    • 2009
  • Silicon Carbide (SiC) is a material with a wide bandgap (3.26eV), a high critical electric field (~2.3MV/cm), a and a high bulk electron mobility (${\sim}900cm^2/Vs$). These electronic properties allow high breakdown voltage, high frequency, and high temperature operation compared to Silicon devices. Although various SiC DMOSFET structures have been reported so far for optimizing performances. the effect of channel dimension on the switching performance of SiC DMOSFETs has not been extensively examined. In this paper, we report the effect of the interface states ($Q_s$) on the transient characteristics of SiC DMOSFETs. The key design parameters for SiC DMOSFETs have been optimized and a physics-based two-dimensional (2-D) mixed device and circuit simulator by Silvaco Inc. has been used to understand the relationship with the switching characteristics. To investigate transient characteristic of the device, mixed-mode simulation has been performed, where the solution of the basic transport equations for the 2-D device structures is directly embedded into the solution procedure for the circuit equations. The result is a low-loss transient characteristic at low $Q_s$. Based on the simulation results, the DMOSFETs exhibit the turn-on time of 10ns at short channel and 9ns at without the interface charges. By reducing $SiO_2/SiC$ interface charge, power losses and switching time also decreases, primarily due to the lowered channel mobilities. As high density interface states can result in increased carrier trapping, or recombination centers or scattering sites. Therefore, the quality of $SiO_2/SiC$ interfaces is important for both static and transient properties of SiC MOSFET devices.

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광 여기 루미네센스를 이용한 신기 퇴적층의 연대측정 (Optical dating of Quaternary sediment)

  • 홍덕균;최정헌;한정희;최만식;정창식
    • 암석학회지
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    • 제10권3호
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    • pp.202-211
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    • 2001
  • 루미네센스(luminescence)는 석영이나 장석 등과 같은 무기결정이 외부에서 에너지를 받아 흡수된 에너지를 빛으로 바꿔 외부에 방출하는 물리적인 현상이다. 가전자대(valence band)에 존재하는 하전입자들은 전리성 방사선에 의해 전자와 정공(hole)으로 이온화 되고, 이온화된 전자와 정공들은 결정 내에서 자유로이 움직이다가 결정 내에 존재하는 격자결함에 포획된다. 이러한 결정을 빛으로 여기하면 격자결함에 포획된 전자들이 결함에서 빠져 나와 발광중심(recombination center)에서 정공과 재결합하면서 빛을 동반하게 되는데, 이를 광 여기 루미네센스(optically stimulated luminescence; OSL)라 한다. 열 루미네센스(thermoluminescence; TL) 연대 측정법의 원리와 같이, 광 여기 루미네센스를 적당한 조건에서 관측하면 퇴적층의 연대 계산에 응용할 수 있다. 광 여기 루미네센스를 연대측정에 이용하면 빛에 민감한 전자들만 여기시킬 수 있는 장점이 있다. 이 연구에서는 신기 퇴적층으로부터 분리된 석영을 청색 파장의 빛으로 여기하여 그로부터 검출된 광 여기 루미네센스를 신기 퇴적층의 연대 산출에 응용하였다. 논문에서는 광 여기 루미네센스 연대측정법과 관련된 일련의 실험방법 및 최근에 소개된 연구성과, 그리고 앞으로 보다 신뢰도 높은 연대측정 결과를 얻기 위해 연구되어야 할 내용을 이 연구에서 수행한 신기 퇴적층의 연대측정 결과와 함께 기술하였다.

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LED용Mg2+·Ba2+Co-Doped Sr2SiO4:Eu 노란색 형광체의 발광특성 (Luminescence Characteristics of Mg2+·Ba2+ Co-Doped Sr2SiO4:Eu Yellow Phosphor for Light Emitting Diodes)

  • 최경재;지순덕;김창해;이상혁;김호건
    • 한국세라믹학회지
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    • 제44권3호
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    • pp.147-151
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    • 2007
  • An improvement for the efficiency of the $Sr_{2}SiO_{4}:Eu$ yellow phosphor under the $450{\sim}470\;nm$ excitation range have been achieved by adding the co-doping element ($Mg^{2+}\;and\;Ba^{2+}$) in the host. White LEDs were fabricated through an integration of an blue (InGaN) chip (${\lambda}_{cm}=450\;nm$) and a blend of two phosphors ($Mg^{2+},\;Ba^{2+}\;co-doped\;Sr_{2}SiO_{4}:Eu$ yellow phosphor+CaS:Eu red phosphor) in a single package. The InGaN-based two phosphor blends ($Mg^{2+},\;Ba^{2+}\;co-doped\;Sr_{2}SiO_{4}:Eu$ yellow phosphor+CaS:Eu red phosphor) LEDs showed three bands at 450 nm, 550 nm and 640 nm, respectively. The 450 nm emission band was due to a radiative recombination from an InGaN active layer. This 450 nm emission was used as an optical transition of the $Mg^{2+},\;Ba^{2+}\;co-doped\;Sr_{2}SiO_{4}:Eu$ yellow phosphor+CaS:Eu red phosphor. As a consequence of a preparation of white LEDs using the $Mg^{2+},\;Ba^{2+}\;co-doped\;Sr_{2}SiO_{4}:Eu$ yellow phosphor+CaS:Eu red phosphor yellow phosphor and CaS:Eu red phosphor, the highest luminescence efficiency was obtained at the 0.03 mol $Ba^{2+}$ concentration. At this time, the white LEDs showed the CCT (5300 K), CRI (89.9) and luminous efficacy (17.34 lm/W).

은어 2종류의 자성발생 2배체의 유도와 Isozyme 유전자에 의한 배수성의 확인 (Induction of Two Types of Gynogenetic Diploid of Sweet Fish, Plecoglossus altivelis and Verification by Isozyme Marker)

  • 손진기
    • 한국발생생물학회지:발생과생식
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    • 제4권1호
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    • pp.79-85
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    • 2000
  • 은어의 자성발생 2배체를 유도하기 위해 자외선에 의한 정자의 유전적 불활성화 및 수정 난의 제 2감수분열과 제 1난할을 저지하기 위한 조건을 검토했다. 정자에 3,000~14,000 erg의 자외선을 조사하였는데 그 결과 3,000 erg를 조사한 시험구에서 89.3%의 높은 생존율을 보였으나 선량이 증가될수록 생존율이 저하했으며 7,000 erg의 자외선을 조사했을 때 생존율이 다시 회복되었다. 따라서 은어의 자성발생 2배체 유도시 정자를 유전적으로 불활성화시키기 위해서는 7,000 erg가 최적 선량인 것으로 나타났다. 제 2극체 방출 저지형 자성발생 2배체를 유도하기 위해서는 자외선을 조사한 정자와 정상 난을 수정 시켜 수정 5~8분 후에 15~30분간 1~2$^{\circ}C$의 저수온 처리를 한 결과 수정 5~5.5분 후에 15~17.5분간 처리한 실험구의 생존율이 비교적 높고 안정적이어서 제 2감수분열 저지를 위한 유효 조건으로 판명되었다. 제 1난할 저지형 자성발생 2배체의 유도를 위해서는 수정 70~95분 후에 수정 난을 30분간 저수온에 처리한 결과 모든 실험구의 생존율이 현저하게 낮아 생존율의 개선을 위해서는 처리방법과 강도에 대한 재검토가 필요하며 또 난 질을 유지시킬 수 있는 방안도 강구되어야 할 것이다.

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