• 제목/요약/키워드: quarantine pathogen

검색결과 81건 처리시간 0.034초

Development of a Multiplex PCR Method to Detect Fungal Pathogens for Quarantine on Exported Cacti

  • Cho, Hyun ji;Hong, Seong Won;Kim, Hyun-ju;Kwak, Youn-Sig
    • The Plant Pathology Journal
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    • 제32권1호
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    • pp.53-57
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    • 2016
  • Major diseases in grafted cacti have been reported and Fusarium oxysporum, Bipolaris cactivora, Phytophthora spp. and Collectotrichum spp. are known as causal pathogens. These pathogens can lead to plant death after infection. Therefore, some European countries have quarantined imported cacti that are infected with specific fungal pathogens. Consequently, we developed PCR detection methods to identify four quarantined fungal pathogens and reduce export rejection rates of Korean grafted cacti. The pathogen specific primer sets F.oF-F.oR, B.CF-B.CR, P.nF-P.nR, and P.cF-P.CR were tested for F. oxysporum, B.cactivora, P. nicotinae, and P. cactorum, respectively. The F.oF-F.oR primer set was designed from the Fusarium ITS region; the B.CF-B.CR and P.nF-P.nR primers respectively from Bipolaris and Phytophthora ITS1; and the P.cF-P.CR primer set from the Ypt1protein gene region. The quarantine fungal pathogen primer pairs were amplified to the specific number of base pairs in each of the following fungal pathogens: 210-bp (F. oxysporum), 510-bp (B. cactivora), 313-bp (P. nicotinae), and 447-bp (P. cactorum). The detection limit for the mono- and multiplex PCR primer sets was 0.1 ng of template DNA under in vitro conditions. Therefore, each primer set successfully diagnosed contamination of quarantine pathogens in export grafted cacti. Consequently, our methodology is a viable tool to screen contamination of the fungal pathogen in exported grafted cacti.

우리나라 파프리카 수출단지 및 선과장의 병해충 조사 (The pests survey of paprika export complexes and packing house in Korea)

  • 김기돈;이시원;강은하;신용길;전재용;허노열;이흥식
    • 농업과학연구
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    • 제40권2호
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    • pp.93-99
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    • 2013
  • The disease and insect were surveyed locally in greenhouse, fruit packing house and store house of 51 farms in 13 towns having purpose of paprika exportation. By analysis, various disease and insect were not only founded locally but more ones detected in farms having old facilities and no natural enemy. We found 15 pathogens such as Fusarium spp., Alternaria solani, Leveilluila taurica, PepMV (Pepino mosaic virus) and TMV (Tobacco mosaic virus) in greenhouse, Fusarium spp. in fruit packing house and Penicillium spp. in store house. We found 15 insects in greenhouse such as Bemisia tabaci, rialeurodes vaporariorum and Myzus persicae in greenhouse, Hylobitelus haroldi in fruit packing house. However, the problem quarantine disease and insect for importation and exportation were not detected in inspection time.

Development of Diagnostic Technology of Xylella fastidiosa Using Loop-Mediated Isothermal Amplification and PCR Methods

  • Kim, Suyoung;Park, Yujin;Kim, Gidon
    • 식물병연구
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    • 제27권1호
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    • pp.38-44
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    • 2021
  • Xylella fastidiosa is the most damaging pathogen in many parts of the world. To increase diagnostic capability of X. fastidiosa in the field, the loop-mediated isothermal amplification (LAMP) and polymerase chain reaction (PCR) assay were developed to mqsA gene of citrate-synthase (XF 1535) X. fastidiosa and evaluated for specificity and sensitivity. Both assays were more robust than current published tests for detection of X. fastidiosa when screened against 16 isolates representing the four major subgroups of the bacterium from a range of host species. No cross reaction with DNA from healthy hosts or other species of bacteria has been observed. The LAMP and PCR assays could detect 10-4 pmol and 100 copies of the gene, respectively. Hydroxynaphthol blue was evaluated as an endpoint detection method for LAMP. There was a significant color shift that signaled the existence of the bacterium when at least 100 copies of the target template were present.

Characterization of Akabane virus (KV0505) from cattle in Korea

  • Yang, Dong-Kun;Kim, Yeon-Hee;Kim, Byoung-han;Kweon, Chang-Hee;Yoon, Soon-Seek;Song, Jae-Young;Lee, Sang-Hun
    • 대한수의학회지
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    • 제48권1호
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    • pp.61-66
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    • 2008
  • Akabane disease is caused by an arthropod-borne viral pathogen and leads to congenital abnormalities of the central nervous system in infected ruminants. One isolate, KV0505, showed cytopathic effect in Vero cells. The KV0505 isolate was obtained from plasma, which was collected from a cattle raised on Jeju Island in May 2005. Jeju Island is located near the southern part of the Korean peninsula. The isolate was confirmed as Akabane virus (AKAV) by immunofluorescence assay using AKAV specific monoclonal antibodies and reverse transcription polymerase chain reaction (RTPCR). Suckling mice inoculated with the isolate showed signs of paralysis and died within 10 days postinoculation. Comparisons of the KV0505 N gene sequence with 39 other known AKAV strains revealed nucleotide homologies ranging from 83.6% (MP496 strain) to 99.7% (M171 strain). When compared with the K-9 strain, which was isolated from a cow in Korea in 1994, the nucleotide sequence homology with the N gene was 99.7%. Thus, genes of the KV0505 isolate were closely related to those of the M171 strain, which were clustered into the Ic group of AKAV.

Identification and Molecular Analysis of Ixodid Ticks (Acari: Ixodidae) Infesting Domestic Animals and Tick-Borne Pathogens at the Tarim Basin of Southern Xinjiang, China

  • Zhao, Li;Lv, Jizhou;Li, Fei;Li, Kairui;He, Bo;Zhang, Luyao;Han, Xueqing;Wang, Huiyu;Johnson, Nicholas;Lin, Xiangmei;Wu, Shaoqiang;Liu, Yonghong
    • Parasites, Hosts and Diseases
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    • 제58권1호
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    • pp.37-46
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    • 2020
  • Livestock husbandry is vital to economy of the Tarim Basin, Xinjiang Autonomous Region, China. However, there have been few surveys of the distribution of ixodid ticks (Acari: Ixodidae) and tick-borne pathogens affecting domestic animals at these locations. In this study, 3,916 adult ixodid ticks infesting domestic animals were collected from 23 sampling sites during 2012-2016. Ticks were identified to species based on morphology, and the identification was confirmed based on mitochondrial 16S and 12S rRNA sequences. Ten tick species belonging to 4 genera were identified, including Rhipicephalus turanicus, Hyalomma anatolicum, Rh. bursa, H. asiaticum asiaticum, and Rh. sanguineus. DNA sequences of Rickettsia spp. (spotted fever group) and Anaplasma spp. were detected in these ticks. Phylogenetic analyses revealed possible existence of undescribed Babesia spp. and Borrelia spp. This study illustrates potential threat to domestic animals and humans from tick-borne pathogens.

국내산 조제유류에서의 위해 미생물 모니터링 (Potential Pathogen Monitoring of Powdered Infant Formula Milk and Related Products in Korea)

  • 김영조;문진산;박현정;허은정;김지호;이희수;위성환
    • 한국식품위생안전성학회지
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    • 제25권4호
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    • pp.341-345
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    • 2010
  • 2010년 국내 4개 제조업체에서 제조한 조제분유 190개, 성장기용 조제분유 95개, 조제우유 15개 등 300개 조제유류를 수집하여 일반세균, 대장균군 및 위해세균에 대한 오염실태를 조사하였다. 그 결과 멸균제품인 조제우유는 일반 세균수, 대장균군을 포함하여 모든 검사에서 음성을 나타내었다. 이에 반하여 비멸균제품인 조제분유와 성장기용 조제분유에서의 일반세균수는 전체 시료 중 83.9%가 검출되었다. 조제분유는 전체 시료 중 72.6%가 g당 10~100 cfu를, 100~1,000 cfu가 7.9%로 조사되었으며, 성장기용조제분유는 전체 시료 중 79.0%가 g당 1~100 cfu를, 100~1,000 cfu가 11.6%로 조사되어 모든 제품이 1,000 cfu/g 이하를 나타내었다. 대장균군에 대한 검사에서는 전제 제품 중 조제분유와 성장기용조제분유가 각각 3건(1.6%)과 1건(1.1%)이 검출되었으며, 그 수준은 3.6, 3.0, 9.1, 9.1 MPN/g으로 조사되어 국내 기준 규격 (n = 5, c = 1, m = 0, M = 10)에 모두 적합한 것으로 나타났다. 또한, FAO/WHO에서 category A 세균으로 분류하고 있는 Salmonella spp.와 Ent. sakazakii에 대한 검사에서는 모두 불검출로 조사되었다. category C group인 c. perfringens, E. coli O157, S. aureus, L. monocytogenes 4종의 식중독 유발 세균에 대한 검사에서도 모두 음성으로 나타났다. category C 세균 종 B. cereus는 조제분유와 성장기조제분유에서 전체 사료 중 12개 제품에서 g당 10-100 cfu의 수준의 균수가 검출되었다. 이와 같이 조제유류의 오염지표 세균 및 위해세균에 대한 검사에서 모두 국내 기준에 적합한 것으로 조사되었다.