• Title/Summary/Keyword: quantitative traits

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The Role of Quantitative Traits of Leaf Litter on Decomposition and Nutrient Cycling of the Forest Ecosystems

  • Rahman, Mohammed Mahabubur;Tsukamoto, Jiro;Tokumoto, Yuji;Shuvo, Md. Ashikur Rahman
    • Journal of Forest and Environmental Science
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    • v.29 no.1
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    • pp.38-48
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    • 2013
  • Decomposition of plant material is an important component in the study of forest ecosystem because of its critical role in nutrient cycling. Different tree species has different nutrient release patterns, which are related to leaf litter quantitative traits and seasonal environmental factors. The quantitative traits of leaf litter are important predictors of decomposition and decomposition rates increase with greater nutrient availability in the forest ecosystems. At the ecosystem level, litter quantitative traits are most often related to the physical and chemical characteristics of the litter, for example, leaf toughness and leaf mass per unit area, and lignin content tannin and total phenolics. Thus, the analysis of litter quantitative traits and decomposition are highly important for the understanding of nutrient cycling in forest ecosystems. By studying the role of litter quantitative traits on decomposition and nutrient cycling in forest ecosystems will provide a valuable insight to how quantitative traits influence ecosystem nutrient dynamics. Such knowledge will contribute to future forest management and conservation practices.

What Holds the Future of Quantitative Genetics? - A Review

  • Lee, Chaeyoung
    • Asian-Australasian Journal of Animal Sciences
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    • v.15 no.2
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    • pp.303-308
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    • 2002
  • Genetic markers engendered by genome projects drew enormous interest in quantitative genetics, but knowledge on genetic architecture of complex traits is limited. Complexities in genetics will not allow us to easily clarify relationship between genotypes and phenotypes for quantitative traits. Quantitative genetics guides an important way in facing such challenges. It is our exciting task to find genes that affect complex traits. In this paper, landmark research and future prospects are discussed on genetic parameter estimation and quantitative trait locus (QTL) mapping as major subjects of interest.

Gene Set Analyses of Genome-Wide Association Studies on 49 Quantitative Traits Measured in a Single Genetic Epidemiology Dataset

  • Kim, Jihye;Kwon, Ji-Sun;Kim, Sangsoo
    • Genomics & Informatics
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    • v.11 no.3
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    • pp.135-141
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    • 2013
  • Gene set analysis is a powerful tool for interpreting a genome-wide association study result and is gaining popularity these days. Comparison of the gene sets obtained for a variety of traits measured from a single genetic epidemiology dataset may give insights into the biological mechanisms underlying these traits. Based on the previously published single nucleotide polymorphism (SNP) genotype data on 8,842 individuals enrolled in the Korea Association Resource project, we performed a series of systematic genome-wide association analyses for 49 quantitative traits of basic epidemiological, anthropometric, or blood chemistry parameters. Each analysis result was subjected to subsequent gene set analyses based on Gene Ontology (GO) terms using gene set analysis software, GSA-SNP, identifying a set of GO terms significantly associated to each trait ($p_{corr}$ < 0.05). Pairwise comparison of the traits in terms of the semantic similarity in their GO sets revealed surprising cases where phenotypically uncorrelated traits showed high similarity in terms of biological pathways. For example, the pH level was related to 7 other traits that showed low phenotypic correlations with it. A literature survey implies that these traits may be regulated partly by common pathways that involve neuronal or nerve systems.

Studies on the Degree of Genetic Divergence for Different Quantitative Traits Between Paremntal Lines of Silkworm, Bombyx mori L., Hybrids

  • Petkov, Naoum;Grekov, Dimitar;Ramnali, Paraskevi
    • International Journal of Industrial Entomology and Biomaterials
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    • v.2 no.1
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    • pp.79-81
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    • 2001
  • A study was conducted to establish the degree of genetic divergence between different hybrid forms and rearing conditions through estimation of the minimum number of genes (allelic pairs) differentiating parents in terms of specific quantitative traits. It was established that the minimum gene numbers differentiating parental lines in the inheritance of cocoon was 1, of cocoon shell weight- between 1 and 2, and of silk filament length- between 2 and 3. The variability in the specific genetic parameter could be explained by the reliability of the statistical-and-genetic method used and the expression of genes affecting the formation of each of the characters tested. Gene expression, in its turns is conditioned both by the gene interaction within the genotypes and the different genotype response to environmental change. To go deep in the problem, experiments should be conducted under strictly controlled conditions, reducing the mathematical-and-genetic analysis to a physiological levels and hence to analyse the genetic nature of the specific quantitative character formation and its genetic control.

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Correlation Coefficient Studies on Certain Quantitative Traits in the Silkworm, Bombyx mori L.

  • Begum, A.Naseema;Yamamoto, T.
    • International Journal of Industrial Entomology and Biomaterials
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    • v.5 no.1
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    • pp.44-52
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    • 2002
  • To understand the relationship among different quantitative traits, correlation studies were performed by utilizing eighty-eight inbred strains of silkworm, Bombyx mori L. on twelve economic characters. Analysis resulted in correlation of 5th instar period with total larval period (r = 0.7882), cocoon weight with shell weight (r = 0.8326), shell weight with shell ratio (r = 0.5067), shell ratio with raw silk % (r = 0.7570), raw silk % with filament length (r = 0.3490), filament size (denier) with reelability (r = 0.3193) and boil-off loss % (r = 0.2792). Negative correlation was observed among filament length with filament size (r = 0.7582) and reelability with boil-off loss % (r = -0.3236). Correlation of different quantitative characters for quality silk production is discussed.

Identification of Quantitative Trait Loci Associated with Traits of Soybean for Sprout

  • Lee, Suk-Ha;Park, Keum-Yong;Lee, Hong-Suk;H. Roger Boerma
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.44 no.2
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    • pp.166-170
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    • 1999
  • The identification of quantitative trait loci (QTL) has the potential to enhance the efficiency of im- proving food processing traits of soybean. In this study, 92 restriction fragment length polymorphism (RFLP) loci and two morphological markers (W$_1$ and T) were used to identify QTL associated with food processing traits of soybean for sprout in 83 F$_2$-derived lines from a cross of 'Pureun' x 'Jinpum 2'. The genetic map consisted of 76 loci which covered about 760 cM and converged into 20 linkage groups. Eighteen markers remained unlinked. Phenotypic data were collected for hypocotyl length, abnormal seedling rate, and sprout yield seven days after seed germination at 2$0^{\circ}C$. Based on the single-factor analysis of variance, eight independent markers were associated with hypocotyl length. Four of seven markers associated with abnormal seedling rate were identified as independent. Seven loci were associated with sprout yield. For three different traits, much of genetic variation was explained by the identified QTL in this population. Several RFLP markers in linkage group (LG) Bl were detected as being associated with three traits, providing a genetic explanation for the biological correlation of sprout yield with hypocotyl length (r=OA07***) and with abnormal seedling rate (r=-406***).

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Morphological Variation of Two Cultivated Types of Perilla Crop from Different Areas of China

  • Ma, Shi Jun;Lee, Ju Kyong
    • Horticultural Science & Technology
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    • v.35 no.4
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    • pp.510-522
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    • 2017
  • To better understand the morphological variation for Perilla crop in different areas of China, we studied the morphological variation in 87 accessions (84 cultivated var. frutescens and three cultivated var. crispa) from high latitude (Northeast China) and middle latitude (North and Northwest China) areas of China by examining seven quantitative and 10 qualitative characters. Analysis of the morphological variation determined that there was significant morphological differences in five quantitative traits between cultivated var. frutescens and cultivated var. crispa, including effective number of branches (QN2), number of internodes (QN3), number of branches (QN4), length of the largest inflorescence (QN5), and days from germination to flowering (QN7). However, two quantitative traits-plant height and number of florets of the largest inflorescence-did not show any significant differences between cultivated var. frutescens and cultivated var. crispa. In addition, significant differences for six quantitative traits were found between the accessions of cultivated var. frutescens originating from high and middle latitude areas in China, which included QN2, QN3, QN5, number of florets of the largest inflorescence (QN6), and QN7. Principal components analysis (PCA) identified five quantitative characters [plant height (QN1), QN2, QN3, QN4, QN7] and six qualitative characters [fragrance of plant (QL1), color of reverse side of leaf (QL3), degree of pubescence (QL5), color of flower (QL6), shape of leaf (QL7), and hardness of seed (QL10)] that contributed to the positive direction on the first axis. The other quantitative and qualitative characters contributed to the negative direction on the first axis. Most accessions of cultivated var. frutescens and cultivated var. crispa were clearly separated by the first axis. In addition, most accessions of cultivated var. frutescens are from high latitude and middle latitude areas that were clearly separated by the first axis, except for several accessions. The findings from this study will provide useful information towards understanding the morphological variation of Perilla crop according to geographical distribution in high and middle latitude regions of China.

Identification of Quantitative Traits Loci (QTL) Affecting Growth Traits in Pigs

  • Kim, T.H.;Choi, B.H.;Lee, H.K;Park, H.S.;Lee, H.Y.;Yoon, D.H.;Lee, J.W.;Jeong, G.J.;Cheong, I.C.;Oh, S.J.;Han, J.Y.
    • Asian-Australasian Journal of Animal Sciences
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    • v.18 no.11
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    • pp.1524-1528
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    • 2005
  • Molecular genetic markers were used to detect chromosomal regions which contain economically important traits such as growth, carcass, and meat quality traits in pigs. A three generation resource population was constructed from a cross between Korean native boars and Landrace sows. A total of 240 F2 animals from intercross of F1 was produced. Phenotypic data on 17 traits, birth weight, body weights at 3, 5, 12, and 30 weeks of age, teat number, carcass weight, backfat thickness, body fat, backbone number, muscle pH, meat color, drip loss, cooking loss, water holding capacity, shear force, and intramuscular fat content were collected for F2 animals. Animals including grandparents (F0), parents (F1), and offspring (F2) were genotyped for 80 microsatellite markers covering from chromosome 1 to 10. Least squares regression interval mapping was used for quantitative trait loci (QTL) identification. Significance thresholds were determined by permutation tests. A total of 10 QTL were detected at 5% chromosome-wide significance levels for growth traits on SSCs 2, 4, 5, 6, and 8.

On the Breeding of Dumbbell Bivoltine Silkworm Breeds of Bombyx mori L. Tolerant to High Temperature and High Humidity Conditions of the Tropics

  • Singh, Harjeet;Kumar, Nair Suresh
    • International Journal of Industrial Entomology and Biomaterials
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    • v.20 no.2
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    • pp.45-59
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    • 2010
  • It is well established fact that under tropical condition, unlike polyvoltines, bivoltines are more vulnerable to various stresses i.e. hot climatic conditions of tropics, poor leaf quality and improper management during summer which are not conducive for bivoltine rearing. Therefore, attempt has been made in this study to develop promising bivoltine breeds tolerant to high temperature and high humidity conditions of the tropics. In the present study, by utilizing temperature tolerant breeds six breeding lines were made and at every generation the 5th instar larvae were exposed to high temperature and high humidity and the survived ones were back crossed with the breeds moderately tolerant to diseases were made to improve the quantitative traits. From F6 generations, alternate rearing in normal temperature and high temperature were conducted. At the end of F12 generation, it was possible to isolate three dumbbell breeds viz., HH8, HH10 and HH12 with improvement in quantitative traits. The methodologies followed for the development are discussed.

Recent Advances in Sheep Genome Mapping

  • Crawford, A.M.
    • Asian-Australasian Journal of Animal Sciences
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    • v.12 no.7
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    • pp.1129-1134
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    • 1999
  • The rapid development of the sheep genetic linkage map over the last five years has given us the ability to follow the inheritance of chromosomal regions. Initially this powerful resource was used to find markers linked to monogenic traits but there is now increasing interest in using the genetic linkage map to define the complex of genes that control multigenic production traits. Of particular interest are those production traits that are difficult to measure and select for using classical quantitative genetic approaches. These include resistance to disease where a disease challenge (necessary for selection) poses too much risk to valuable stud animals and meat and carcass qualities which can be measured only after the animal has been slaughtered. The goal for the new millennium will be to fully characterise the genetic basis of multigenic production traits. The genetic linkage map is a vital tool required to achieve this.