• Title/Summary/Keyword: pairs set

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Construction of DNA Profile Data Base of Strawberry Cultivars Using Microsatellite Markers (Microsatellite 마커를 이용한 딸기 품종의 DNA Profile Database 구축)

  • Hong, Jee-Hwa;Choi, Keun-Jin;Kwon, Yong-Sham
    • Horticultural Science & Technology
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    • v.32 no.6
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    • pp.853-863
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    • 2014
  • This study was carried out to construct a DNA profile database of 100 strawberry cultivars using microsatellite markers. Two hundred seventy four microsatellite primer pairs were screened with a set of 21 strawberry cultivars with different morphological traits. Twenty five primer pairs were selected because they produced reliable and reproducible fingerprints. These primer pairs were used to develop DNA profiles of 100 strawberry cultivars. Three to thirteen alleles were detected by each marker with an average of 7.50. The average polymorphism information content varied from 0.331 to 841 (average 0.706). Cluster analysis showed that the 100 cultivars were divided into 7 major groups reflecting geographic origin and pedigree information. Moreover, most of the cultivars could be discriminated by marker genotypes. These markers will be useful as a tool for the protection of plant breeders' intellectual property rights in addition to providing the means to intervene seed disputes relating to variety authentication.

A Study on the Development of Plural Gravity Models and their Application Method (복수 중력모형의 구축과 적용방법에 관한 연구)

  • Ryu, Yeong-Geun
    • Journal of Korean Society of Transportation
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    • v.31 no.2
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    • pp.60-68
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    • 2013
  • This study developed plural gravity models and their application method in order to increase the accuracy of trip distribution estimation. The developed method initially involves utilizing the coefficient of determination ($R^2$) to set the target level. Afterwards, the gravity model is created, and if the gravity model's coefficient of determination is satisfactory in regards to the target level, the model creation is complete and future trip distribution estimation is calculated. If the coefficient of determination is not on par with the target level, the zone pair with the largest standardized residual is removed from the model until the target level is obtained. In respect to the model, the removed zone pairs are divided into positive(+) and negative(-) sides. In each of these sides, gravity models are made until the target level is reached. If there are no more zone pairs to remove, the model making process concludes, and future trip distribution estimation is calculated. The newly developed plural gravity model and application method was adopted for 42 zone pairs as a case study. The existing method of utilizing only one gravity model exhibited a coefficient of determination value ($R^2$) of 51.3%, however, the newly developed method produced three gravity models, and exhibited a coefficient of determination value ($R^2$) of over 90%. Also, the accuracy of the future trip distribution estimation was found to be higher than the existing method.

Class prediction of an independent sample using a set of gene modules consisting of gene-pairs which were condition(Tumor, Normal) specific (조건(암, 정상)에 따라 특이적 관계를 나타내는 유전자 쌍으로 구성된 유전자 모듈을 이용한 독립샘플의 클래스예측)

  • Jeong, Hyeon-Iee;Yoon, Young-Mi
    • Journal of the Korea Society of Computer and Information
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    • v.15 no.12
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    • pp.197-207
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    • 2010
  • Using a variety of data-mining methods on high-throughput cDNA microarray data, the level of gene expression in two different tissues can be compared, and DEG(Differentially Expressed Gene) genes in between normal cell and tumor cell can be detected. Diagnosis can be made with these genes, and also treatment strategy can be determined according to the cancer stages. Existing cancer classification methods using machine learning select the marker genes which are differential expressed in normal and tumor samples, and build a classifier using those marker genes. However, in addition to the differences in gene expression levels, the difference in gene-gene correlations between two conditions could be a good marker in disease diagnosis. In this study, we identify gene pairs with a big correlation difference in two sets of samples, build gene classification modules using these gene pairs. This cancer classification method using gene modules achieves higher accuracy than current methods. The implementing clinical kit can be considered since the number of genes in classification module is small. For future study, Authors plan to identify novel cancer-related genes with functionality analysis on the genes in a classification module through GO(Gene Ontology) enrichment validation, and to extend the classification module into gene regulatory networks.

Effect of Regulatory focus and Theory of Intelligence in the order of learning (학습순서 결정에서 지능관점과 조절초점의 영향)

  • Cho, Hyeseung;Kim, Kyungil;Bae, Jinhee
    • Korean Journal of Cognitive Science
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    • v.31 no.4
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    • pp.137-154
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    • 2020
  • Psychological properties of learners have influence on learning behaviors in various ways. The purpose of this study was to examine how the goal orientation of learners affected the learning time distribution method. Regulatory focus and theories of intelligence were measured and manipulated in order to differentiate participants' goal-oriented state. Two variables are known to be key variables influencing learner's goal orientation, inducing the approach-avoidance strategy and mastery-performance oriented attitude. In the experiment, the control focus was divided into two groups based on the inclination test score (regulatory Focus Questionnaire, RFQ), and TOI(theory of intelligence) was temporally induced through manipulation to confirm the interaction between the two variables. Participants were able to determine the order of learning freely by learning a set of Spanish-Korean word pairs and then selecting the items they would like to re-learn. Word pairs consisted of difficult or easy items, and learners could learn the same word many times if they wanted to. In the results, promotion-incremental group showed allocating difficult word-pairs in early time.

Studies on the Chromosome Types of Ginkgo Species (은행(銀杏)나무류(類) 염색체(染色體)에 관(關)한 연구(硏究))

  • Kim, Su In
    • Journal of Korean Society of Forest Science
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    • v.84 no.2
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    • pp.131-144
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    • 1995
  • To determine the structure of chromosome and to identify the sex chromosome of Ginkgo biloba and G. biloba var. fastigiata, the samples were obtained from root tips of trees growing in seven different provinences. The results are as follows. The basic number of somatic chromosomes was 2n=24. The range of a relative length of long chromosome was between $14.88{\sim}11.18{\mu}m$ and that of short chromosome was $8.11{\sim}6.24{\mu}m$. The chromosome sets were composed with one long pairs of m type and 11 short pairs of sm or st type. These short pairs showed the continuous descending in length. There was a satellite on the short arm of the Longest chromosome pair, and were satellites of the one or both long arm of 7th or 8th chromosome pair which were sm or st type, or the shortest st type chromosome pair. Sometimes, a satellite on the short arm of the longest chromosome pairs of Ginkgo biloba was double satellite, but that of G. biloba var. fastigiata was not. Karyotype was $2n=24=2^{2s}A^m+2B^{st\;or\;sm}+2C^{st}+2D^{st}+2E^{st}+2F^{st\;or\;sm}+2G^{sm}+2^{2s}H^{sm}\;or\;(^{1s}H^{sm}+H^{sm})+2I^{st}+2J^{st}+2K^{st}+2^{2s}L^{st}\;or\;(^{1s}L^{st}+L^{st})$. The male and female trees were not apparently distinguished by the chromsome structures. However the differences between the satellites could be used to identify the male and females. The male tree has double satellite on short arm of a longest chromosome pairs and females' has not. Also female trees have a satellite on a short chromosome more frequently than male trees.

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A historical study on the flexibility square-format typeface and the prospects - Focused on the three-pairs fonts of hangeul - (탈네모글꼴에 관한 역사적 연구와 전망 - 세벌식 한글 글꼴을 중심으로 -)

  • Yu, Jeong-Mi
    • Archives of design research
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    • v.19 no.2 s.64
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    • pp.241-250
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    • 2006
  • Hangeul as the Korean unique characters were invented according to some character-making principles and based on scholars' exhaustive researches. While most of the characters in the world evolved naturally, Hangeul was invented based on a precise linguistic analysis of the time, and therefore, it is most scientific and reasonable among various characters throughout the world. Nevertheless, Hangeul typeface designs do not seem to inherit the ideology of scientific and reasonable Hangeul correctly. For the square forms have been used intact due to the influences from the Chinese characters which prevailed during the time. If a single set of square characters should be designed, as much as 11,172 fonts should be designed, which suggests that advantages of Mangeul may not well be used fully; Hangeul was invented to visualize every sound with the combinations of 28 vowels and consonants. Problems of such square fonts began to be identified since 1900's when typewriters were introduced first from the West. Since a typewriter is designed with 28 characters laid out on its keyboard by using such combinations, the letters may be easily combined on it. The so-called the flexibility square-format typeface was born as such. Specially, the three-pairs fonts of these can be combined up to 67 letters including vowels and consonants. The three-pairs fonts system can help to solve the problems arising form the conventional square fonts and inherit the original ideology of Hangeul invention. This study aims to review the history of the three-pairs fonts designs facilitated by mechanic encoding of Hangeul and thereupon, suggest some desirable directions for future Hangeul fonts. Since the flexibility square-format typeface is expected to evolve more and more owing to development of the digital technology, they would serve our age of information in terms of both functions and convenience. Just as Hunminjongum tried to be literally independent from the Chinese characters, so the flexibility square-format typeface designs would serve to recover identity of our Hangeul font designs.

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A Duplex PCR for Detection of Phytophthora katsurae Causing Chestnut Ink Disease (밤나무 잉크병균, Phytophthora katsurae의 검출을 위한 Duplex PCR)

  • Lee, Dong-Hyeon;Lee, Sun-Keun;Kim, Hye-Jeong;Lee, Sang-Hyun;Lee, Sang-Yong;Lee, Jong-Kyu
    • Research in Plant Disease
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    • v.18 no.2
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    • pp.73-79
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    • 2012
  • Phytophthora katsurae is a fungal pathogen responsible for chestnut ink disease. We designed two duplex primer sets (SOPC 1F/1R+KatI 3F/5R, SOPC 1-1F/1-1R+KatI 3F/5R) to detect P. katsurae. SOPC 1F/1R and SOPC 1-1F/1-1R primer pairs were designed for sequence characteristic amplification regions (SCAR) marker, and KatI 3F/5R primer pair was used for P. katsurae-specific primer designed from internal transcribed spacer (ITS) region. To assess the sensitivity of duplex PCR, genomic DNA was serially diluted 10-fold to make the final concentrations from 1 mg/ml to 1 ng/ml. The sensitivity for two primer sets were 1 ${\mu}g/ml$ and 100 ng/ml, respectively. To find detection limits for zoospores of P. katsurae, each zoospore suspension was serially diluted 10-fold to make the final concentrations from $1{\times}10^6$ to $1{\times}10^2$ cells/ml, and then DNA was extracted. The limits of detection for all of two primer sets were $1{\times}10^5$ cells/ml. All of two primer sets were specific to P. katsurae in PCR detection and did not produce any P. katsurae-specific PCR amplicons from other 16 Phytophthora species used as the control. This study shows that duplex PCR using two primer sets might be a useful tool for rapid and efficient detection of P. katsurae.

Performance Improvement by a Virtual Documents Technique in Text Categorization (문서분류에서 가상문서기법을 이용한 성능 향상)

  • Lee, Kyung-Soon;An, Dong-Un
    • The KIPS Transactions:PartB
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    • v.11B no.4
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    • pp.501-508
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    • 2004
  • This paper proposes a virtual relevant document technique in the teaming phase for text categorization. The method uses a simple transformation of relevant documents, i.e. making virtual documents by combining document pairs in the training set. The virtual document produced by this method has the enriched term vector space, with greater weights for the terms that co-occur in two relevant documents. The experimental results showed a significant improvement over the baseline, which proves the usefulness of the proposed method: 71% improvement on TREC-11 filtering test collection and 11% improvement on Routers-21578 test set for the topics with less than 100 relevant documents in the micro average F1. The result analysis indicates that the addition of virtual relevant documents contributes to the steady improvement of the performance.

The Strength of the Relationship between Semantic Similarity and the Subcategorization Frames of the English Verbs: a Stochastic Test based on the ICE-GB and WordNet (영어 동사의 의미적 유사도와 논항 선택 사이의 연관성 : ICE-GB와 WordNet을 이용한 통계적 검증)

  • Song, Sang-Houn;Choe, Jae-Woong
    • Language and Information
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    • v.14 no.1
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    • pp.113-144
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    • 2010
  • The primary goal of this paper is to find a feasible way to answer the question: Does the similarity in meaning between verbs relate to the similarity in their subcategorization? In order to answer this question in a rather concrete way on the basis of a large set of English verbs, this study made use of various language resources, tools, and statistical methodologies. We first compiled a list of 678 verbs that were selected from the most and second most frequent word lists from the Colins Cobuild English Dictionary, which also appeared in WordNet 3.0. We calculated similarity measures between all the pairs of the words based on the 'jcn' algorithm (Jiang and Conrath, 1997) implemented in the WordNet::Similarity module (Pedersen, Patwardhan, and Michelizzi, 2004). The clustering process followed, first building similarity matrices out of the similarity measure values, next drawing dendrograms on the basis of the matricies, then finally getting 177 meaningful clusters (covering 437 verbs) that passed a certain level set by z-score. The subcategorization frames and their frequency values were taken from the ICE-GB. In order to calculate the Selectional Preference Strength (SPS) of the relationship between a verb and its subcategorizations, we relied on the Kullback-Leibler Divergence model (Resnik, 1996). The SPS values of the verbs in the same cluster were compared with each other, which served to give the statistical values that indicate how much the SPS values overlap between the subcategorization frames of the verbs. Our final analysis shows that the degree of overlap, or the relationship between semantic similarity and the subcategorization frames of the verbs in English, is equally spread out from the 'very strongly related' to the 'very weakly related'. Some semantically similar verbs share a lot in terms of their subcategorization frames, and some others indicate an average degree of strength in the relationship, while the others, though still semantically similar, tend to share little in their subcategorization frames.

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Retentive Force of Adjustable Dental Impression Trays with Different Synthetic Resin Materials (합성수지 재료에 따른 가변형 치과 인상용 트레이의 유지력에 관한 연구)

  • Lee, In-Seob;Lee, jin-Han;Kim, Yu-Lee;Dong, Jin-Keun
    • Journal of Dental Rehabilitation and Applied Science
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    • v.22 no.1
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    • pp.11-21
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    • 2006
  • The adjustable dental impression trays were made for being adjusted their width automatically along the width of patient's dental arch. The purpose of this study was to investigate the retentive force of adjustable dental impression trays made of different synthetic resin materials. Three pairs of adjustable trays were made of ABS(acrylonitrile butadiene styrene) synthetic resin, polyurethane synthetic resin and polycarbonate synthetic resin with a hole and without a rim on the border area of them. The experiment was done with the horse-shoe shaped metal plate to pull out the set impression body from the tray jig which was made for holding the tray on the lower part of Universal Testing Machine(UTM, Zwick Z020, Zwick Co., Germany). After the alginate impression in the tray was allowed to set four minutes, a tensile force was applied at right angles to the tray which had been previously seated on the jig. The force was applied to measure a maximum force by use of UTM at a constant strain rate 100mm per minute. The results obtained in this study were as follows : 1. The upper trays were showed higher retentive force than lower trays in three tray materials. 2. There was no significant difference in the retentive force of the tray materials(p>0.05).