• Title/Summary/Keyword: oxygen cluster

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Molecular Cloning and Analysis of the Gene for P-450 Hydroxylase from Pseudonocardia autotrophica IFO 12743

  • Kim, Jung-Mee;Younmie Jin;Hyun, Chang-Gu;Kim, Jong-Hee;Lee, Hong-Sub;Kang, Dae-Kyung;Kang, Dae-Jung;Kim, Tae-Yong;Suh, Joo-Won
    • Journal of Microbiology
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    • v.40 no.3
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    • pp.211-218
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    • 2002
  • A 4.8-kb DNA fragment encoding the P-450 type hydroxylase and ferredoxin genes was cloned from Pseudonocardia autotrophica IFO 12743 that can convert vitamin D$\_$3/ into its hydroxylated active forms. In order to isolate the P-450 gene cluster in this organism, we designed PCR primers on the basis of the regions of an oxygen binding site and a heme ligand pocket that are general characteristics of the P-450 hydroxylase. Sequencing analysis of the BamHI fragment revealed the presence of four complete and one incomplete ORFs, named PauA, PauB, PauC, and PauD, respectively. As a result of computer-based analyses, PauA and PauB have homology with enoyl-CoA hydratase from several organisms and the positive regulators belonging to the tetR family, respectively. PauC and PauD show similarity with SuaB/C proteins and ferredoxins, respectively, which are composed of P-450 monooxygenase systems for metabolizing two sulfonylurea herbicides in Streptomyces griseolus PauC shows the highest similarity with another CytP-450$\_$Sca2/ protein that is responsible for production of a specific HMG-CoA reductase inhibitor, pravastatin, in S. carbophilus. Cultures of Steptomyces lividans transformant, containing the P-450 gene cluster on the pWHM3 plasmid, was unable to convert vitamin D$\_$3/ to its hydroxylated forms.

Community Structure and Spatial Distribution of Phytoplankton in the Southwestern Sea of Korea, in Early Summer (초여름 韓國 西南海域 植物플랑크톤의 群集構造와 分布)

  • Shim, Jae Hyung;Park Yong Chul
    • 한국해양학회지
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    • v.19 no.1
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    • pp.68-81
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    • 1984
  • To characterize community structure and distribution of phytoplankton, cluster analyses are performed on quantitative data of phytoplankton collected from the southwestern sea of Korea in early summer, 1980. The cluster analysis shows that the phytoplankton of the study area consists of three distinct characteristic communities, representing different water masses. The species of the first community, predominant in the southwestern coastal were of the main land, are mostly neritic and cold water diatoms. The second community consists of neritic and oceanic diatoms, a few flagellates and an euglenoid. These species are predominant in the vicinity of Jeju Island with warm and high saline waters which seems to be a branch of the Kuroshio Current. The species of the last community, consisting primarily of small-sized dinoflagellates, are predominant in the rest part of the study area with warm and low saline water. Addition, the vertical distributions of phytoplankton and environmental factors show that high concentration of phytoplankton cells, chlorophyll-a and dissolved oxygen are observed near the seasonal pycnocline in the off-coastal area. Fraction of nanoplankton take the above 90% of the total cell concentration in the surface mixed layer of off-coastal area where the seasonal pycnocline develops in summer.

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Improvement of Depth Profiling Analysis in $Hf_xO_y/Al_xO_y/Hf_xO_y$ structure with Sub 10 nm by Using Low Energy SIMS

  • Lee, Jong-Pil;Park, Sang-Won;Choe, Geun-Yeong;Park, Yun-Baek;Kim, Ho-Jeong;Kim, Chang-Yeol
    • Proceedings of the Korean Vacuum Society Conference
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    • 2012.02a
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    • pp.162-162
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    • 2012
  • Sub 100 nm의 Complementary Metal-Oxide-Semiconductor (CMOS) 소자를 구동하기 위해서는 2.0 nm 이하의 $SiO_2$ oxide에 해당하는 전기적 특성이 요구된다. 그러나 2.0 nm 이하의 $SiO_2$에서는 누설 전류가 너무 크기 때문에 이를 대체하기 위해서 유전 상수 (dielectric permittivity)가 높은 $HfO_2$ (${\varepsilon}=25$), $Al_2O_3$, $HfO_2/Al_2O_3$ laminate 등의 high-k dielectric 물질들이 연구되고 있다[1]. High-k dielectric 물질의 전기적 특성은 박막 조성, 두께 및 전극과의 계면에 생성되는 계면 층이나 불순물(Impurity) 거동에 크게 의존하므로 High-k dielectric/전극(Metal or Si) 구조에서 조성 및 불순물의 거동에 대한 정확한 평가가 주요 쟁점으로 부각되고 있다. 이를 평가하기 위해 일반적으로 $Ar^+$ ion에 의한 depth profiling 분석이 진행되나 Oxygen 원자의 선택적 식각에 기인된 분석 깊이 분해능(Depth Resolution) 왜곡으로 계면 층의 형성이나 불순물의 거동을 정확하게 평가할 수 없다. 이러한 예로는 $Ta_2O_5$$SrBi_2Ta_2O_9$와 같은 다 성분 계 산화막에 $Ar^+$ ion 주사 시 발생하는 선택적인 식각(Preferential Sputtering) 때문에 박막의 실제 조성 및 거동을 평가하는 것은 어렵다고 보고된 바 있다[2,3]. 본 연구에서는 $90{\AA}$인 적층 $Hf_xO_y/Al_xO_y/Hf_xO_y$ 구조에서의 불순물 거동 분석 능력 확보 상 주요 인자인 깊이 분해능 개선을 Secondary Ion Mass Spectroscopy(SIMS)의 primary ion 종, impact energy 및 주사 각도를 변화시켜 ~1 nm 수준까지 구현하였다. 이러한 분석 깊이 분해능의 개선은 Low Impact Energy, 입사 이온의 glancing angle 및 Cluster ion 적용에 의존하며 이들 요인의 효과에 대해 비교/고찰하고자 한다.

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Water Environment Evaluation by Benthic Macro-Invertebrates of Industrial and Agricultural Areas in Pyeongtaek City (평택시 산업지역 및 농업지역 하천의 저서성 대형무척추동물에 의한 수환경평가)

  • Oh-Jip Park;Yang-Seop Bae
    • Journal of Wetlands Research
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    • v.26 no.2
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    • pp.127-138
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    • 2024
  • The river ecosystems are influenced by numerous human activities such as agriculture and industrial operations, and benthic macroinvertebrates are utilized as important biological indicators. In this study, we aimed to assess the impact of land use surrounding rivers on river ecosystems in two industrial areas and two agricultural areas in Pyeongtaek city. We measured water temperature, dissolved oxygen (DO), and pH for physicochemical water quality assessment, and conducted water environment evaluation using benthic macroinvertebrates, cluster analysis, BMI, and ESB. Through water environment assessment, the environmental condition of rivers in agricultural areas was found to be more favorable compared to those in industrial areas. Consequently, it was observed that the impact on river ecosystems varied depending on the differences in anthropogenic activities.

HIPIMS Arc-Free Reactive Deposition of Non-conductive Films Using the Applied Material ENDURA 200 mm Cluster Tool

  • Chistyakov, Roman
    • Proceedings of the Korean Vacuum Society Conference
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    • 2012.02a
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    • pp.96-97
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    • 2012
  • In nitride and oxide film deposition, sputtered metals react with nitrogen or oxygen gas in a vacuum chamber to form metal nitride or oxide films on a substrate. The physical properties of sputtered films (metals, oxides, and nitrides) are strongly influenced by magnetron plasma density during the deposition process. Typical target power densities on the magnetron during the deposition process are ~ (5-30) W/cm2, which gives a relatively low plasma density. The main challenge in reactive sputtering is the ability to generate a stable, arc free discharge at high plasma densities. Arcs occur due to formation of an insulating layer on the target surface caused by the re-deposition effect. One current method of generating an arc free discharge is to use the commercially available Pinnacle Plus+ Pulsed DC plasma generator manufactured by Advanced Energy Inc. This plasma generator uses a positive voltage pulse between negative pulses to attract electrons and discharge the target surface, thus preventing arc formation. However, this method can only generate low density plasma and therefore cannot allow full control of film properties. Also, after long runs ~ (1-3) hours, depends on duty cycle the stability of the reactive process is reduced due to increased probability of arc formation. Between 1995 and 1999, a new way of magnetron sputtering called HIPIMS (highly ionized pulse impulse magnetron sputtering) was developed. The main idea of this approach is to apply short ${\sim}(50-100){\mu}s$ high power pulses with a target power densities during the pulse between ~ (1-3) kW/cm2. These high power pulses generate high-density magnetron plasma that can significantly improve and control film properties. From the beginning, HIPIMS method has been applied to reactive sputtering processes for deposition of conductive and nonconductive films. However, commercially available HIPIMS plasma generators have not been able to create a stable, arc-free discharge in most reactive magnetron sputtering processes. HIPIMS plasma generators have been successfully used in reactive sputtering of nitrides for hard coating applications and for Al2O3 films. But until now there has been no HIPIMS data presented on reactive sputtering in cluster tools for semiconductors and MEMs applications. In this presentation, a new method of generating an arc free discharge for reactive HIPIMS using the new Cyprium plasma generator from Zpulser LLC will be introduced. Data (or evidence) will be presented showing that arc formation in reactive HIPIMS can be controlled without applying a positive voltage pulse between high power pulses. Arc-free reactive HIPIMS processes for sputtering AlN, TiO2, TiN and Si3N4 on the Applied Materials ENDURA 200 mm cluster tool will be presented. A direct comparison of the properties of films sputtered with the Advanced Energy Pinnacle Plus + plasma generator and the Zpulser Cyprium plasma generator will be presented.

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Distribution of Copepod Indicator Species and Zooplankton communities in Pusan Harbor, Korea (부산항 해역의 지표성 요각류 분포 및 동물플랑크톤 군집)

  • 홍성윤;마채우
    • 한국해양학회지
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    • v.29 no.2
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    • pp.132-144
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    • 1994
  • The relationship of zooplankton communities and distributions of copepods as indicator species to environmental variables, such as temperature, salinity, chemical oxygen demand (COD) and total inorganic nitrogen (TIN) was studied in Pusan Harbor in October 1990 and January, April and July 1991. Zooplankton communities were analysed by using cluster analysis and species diversity index. Four groups of copepods as indicator species were Acrocalanus gacilis, Euchaeta plana, pareuchaeta russell and Pleuromamma gracilis as the oceanic warm water species; Cemtropages abdominalis as the neritic cold water species; Meridian lucens as the oceanic cold water species Acartia omorii as the polluted water species. the offshore waters of Pusan harbor was dominated by the oceanic warm water species in October and by the neritic cold water species in January and April. This area showed the low values of COD and Tin. the inshore waters of Pusan harbor, where the high values of cod And Tin and the low value of diversity were recorder was represented by A.. omorii. Cluster analysis of the zooplankton community revealed two or three regional areas in Pusan harbor. Area I, the offshore area of Pusan harbor, not only was represented high species diversity and low density of A. omorii but also was dominated copepods in zooplankton roups. Areas II and III were grouped horizontally from offshore to inshore of Pusan harbor. Area II was showed intermediate values in diversity, density of A. omorii and percentage composition of copepods. Area III was revealed the lowest diversity,density of A.omorii and percentage composition of Cladocerans.Coperpoda was a dominant zooplankton group in each area during the study periods except two special cases.Area II was dominated by Noctiluca scintillans in April and Area III was occupied by Cladocerans in July.Distribution of Indicator species and areas demarcated based on cluster analysis showed a close relationship with environments.

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Influence of the Donor Side of Photosystem II on the Photogeneration of Superoxide Radicals and Chlorophyll a Fluorescence

  • Weng, Jun;Zhang, Suping;Pan, Jingxi;Jinxing, Chen;Xu, Chunhe
    • Journal of Photoscience
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    • v.9 no.2
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    • pp.385-387
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    • 2002
  • Direct EPR evidence of the photo-generation of superoxide radicals ( $O_2$$^{-.}$) was obtained by using spin trapping techniques in spinach photosystem II (PSII) membranes. $O_2$$^{-.}$ was detected by following the formation of 5-diethoxyphosphoryl-5-methyl-1 -pyrroline-N-oxide (DEPMPO) superoxide adducts, DEPMPO-OOH. The significant increase of the EPR signal amplitude of DEPMPO-OOH in N$H_2O$H-, CaC $l_2$- and NaCl-treated PSII membranes showed that the oxygen-evolving system has a close relation to the $O_2$$^{-.}$ production. PSII membranes with inactivated donor side could not prevent the $O_2$$^{-.}$ production efficiently. Treatments on PSII donor side also influence the maximum level and the kinetics of Chlorophyll (Chi) a fluorescence. Results suggested that manganese cluster and extrinsic proteins might affect Chi a fluorescence in ways different from that happens at the acceptor side of PSII.SII.SII.

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Geochemistry of Pyrophyllite Deposits in Yangsan-Milyang Areas in Korea (경남 양산 및 밀양지역 납석광상의 지구화학적 연구)

  • Cheong, Young-Wook;Chon, Hyo-Taek
    • Economic and Environmental Geology
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    • v.22 no.4
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    • pp.341-354
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    • 1989
  • Mineralogy and geochemistry of five pyrophyllite deposits in Yangsan-Milyang area such as Cheonbulsan, Dumyong, Dongrae, Youkwang, and Sungjin mines were investigated. Pyrophyllite ores consist mainly of pyrophyllite, sericite, and quartz with some amounts of kaolinite and pyrite. Polytype of pyrophyllite is 2M. Sericite has two polytypes of 1M and 2M1. The ${\delta}^{18}O$ values of pyrophyllite from the Cheonbulsan and the Dumyong mines were measured as 0.23-0.60‰ and 3.40‰, respectively, and those of montmorillonite and kaolinite from the Dumyong mine were in the range of 11.90-12.06‰. This low oxygen isotope composition provides conclusive evidence for hydrothermal activity in the studied area. Contents of major elements are more useful than those of trace elements to discriminate altered zones such as pyrophyllite, sericite, argillic, and andalusite zones from the surrounding rocks. Particularly, contents of $K_2O$, $Na_2O$ and CaO are helpful to identify alteration zones from the discriminant and the cluster analysis of multi-element data.

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Properties of $ Y_2O_3$ Thin Films Prepared by ICBD Method (ICBD 법에 의한 $ Y_2O_3$박막특성에 관한 연구)

  • Jeon, J. S.;Moon, J.;Lee, S. I.;Shim, T. E.;Hwang, J. N.
    • Journal of the Korean Vacuum Society
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    • v.5 no.3
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    • pp.245-250
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    • 1996
  • $Y_2O_3$ thin film on si(100) was successfully grown by ionized cluster beam(ICBD) technique at substrate temperature of around $500^{\circ}C$ and pressure of ~$10^{-5}$Torr.To prevent the oxidation of Si substrae, a very thin yttrium layer was deposited on Si before reactive depositing of oxygen and yttrium source. In asdeposited stage, b.c.c and h.c.p strucutres of $Y_2O_3$ were observed from S-ary analysis. From the observation of spots and ring patterns in selected area diffractin(SAD) patterns. crystallane formation and growth could be proceeded during the deposition. $Y_2O_3$/mixed layer/$SiO_2=170\AA/50\AA/10\AA$ structure were verified by high resolution transmition electron imcroscopy(HRTEM) image, and the formation of amorphous layer of SiO2 was discussed . Electricla charateristics of the film were also investigated . In as-deposited Pt/$Y_2O_3$/Si sturcuture, leakage current was less than $10^{-6}$A/$\textrm{cm}^2$ at 7MV/cm strength.

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Low-Resolution Spectroscopy for the Intriguing Globular Cluster NGC 2808 : Chemical abundance patterns among subpopulations

  • Hong, Seungsoo;Lim, Dongwook;Han, Sang-Il;Lee, Young-Wook
    • The Bulletin of The Korean Astronomical Society
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    • v.41 no.2
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    • pp.43.4-44
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    • 2016
  • The presence of multiple stellar populations is now well established in most globular clusters (GCs) in the Milky Way. The origin of this phenomenon, however, is yet to be understood. In this respect, the study of NGC 2808, an intriguing GC which hosts subpopulations with extreme helium abundances, would help to resolve this problem. In order to investigate chemical abundance patterns among different subpopulations in this GC, we have performed low-resolution spectroscopy for the red-giant-branch (RGB) stars and measured CN & CH bands, and Ca line strength. We have identified at least three subpopulations from the CN abundance distribution. This GC shows CN-CH anti-correlation following the general trend among "normal" GCs. In addition, we have cross-matched our results with the high-resolution data in literature, and found a tight correlation between CN strength and sodium abundance. However, CN is anticorrelated with oxygen abundance, as expected from the well known N(&Na)-O anticorrelation. In this talk, we will discuss the implication of these results.

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