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Toxicogenomic Analysis and Identification of Estrogen Responsive Genes of Di (n-ethylhexyl) Phthalate in MCF-7 Cells

  • Kim, Youn-Jung;Yun, Hye-Jung;Ryu, Jae-Chun
    • Molecular & Cellular Toxicology
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    • v.1 no.3
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    • pp.149-156
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    • 2005
  • Di (n-ethylhexyl) phthalate (DEHP) is thought to mimic estrogens in their action, and are called endocrine disrupting chemicals. DEHP is used in numerous consumer products, especially those made of flexible polyvinyl chloride and have been reported to be weakly estrogenic. In this study, DEHP were tested for estrogenic properties in vitro models and with microarray analysis. First, the E-screen assay was used to measure the proliferation of DEHP in MCF-7 cells, a human breast cancer cell line. DEHP induced an increase in MCF-7 cell proliferation at concentration of $10^{-4}M$. Second, we carried out a microarray analysis of MCF-7 cells treated with DEHP using human c-DNA microarray including 401 endocrine system related genes. Of the genes analyzed, 60 genes were identified showing significant changes in gene expression resulting from DEHP. Especially, 4 genes were repressed and 4 genes were induced by DEHP compared to $17{\beta}-estradiol$. Among these genes, trefoil factor 3 (intestinal), breast cancer 1, early onset and CYP1B1 are involved in estrogen metabolism and regulation. Therefore it suggests that these genes may be associated with estrogenic effect of the DEHP on transcriptional level. The rationale is that, as gene expression is a sensitive endpoint, alterations of these genes may act as useful biomarkers to define more precisely the nature and level of exposure to kinds of phthalates.

Remote Sensing of Wave Trajectory in Surf Zone using Oblique Digital Videos (해안 디지털 비디오를 이용한 쇄파지역에서의 파랑궤적 측정)

  • Yoo, Je-Seon;Shin, Dong-Min;Cho, Yong-Sik
    • Journal of Korean Society of Coastal and Ocean Engineers
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    • v.20 no.4
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    • pp.333-341
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    • 2008
  • A remote sensing technique to identify trajectories of breaking waves in the surf zone using oblique digital nearshore videos is proposed. The noise arising from white foam induced by wave breaking has hindered accurate remote sensing of wave properties in the surf zone. For this reason, this paper focuses on image processing to remove the noise and wave trajectory identification essential for wave property estimation. The nearshore video imagery sampled at 3 Hz are used, covering length scale(100 m). Original image sequences are processed through image frame differencing and directional low-pass image filtering to remove the noise characterized by high frequencies in the video imagery. The extraction of individual wave crest features is conducted using a Radon transform-based line detection algorithm in the processed cross-shore image timestacks having a two-dimensional space-time domain. The number of valid wave crest trajectories identified corresponds to about 2/3 of waves recorded by the in-situ sensors.

Zebrafish Dnd protein binds to 3'UTR of geminin mRNA and regulates its expression

  • Chen, Shu;Zeng, Mei;Sun, Huaqin;Deng, Wenqian;Lu, Yilu;Tao, Dachang;Liu, Yunqiang;Zhang, Sizhong;Ma, Yongxin
    • BMB Reports
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    • v.43 no.6
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    • pp.438-444
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    • 2010
  • Dnd (dead end) gene encodes an RNA binding protein and is specifically expressed in primordial germ cells (PGCs) as a vertebrate-specific component of the germ plasma throughout embryogenesis. By utilizing a technique of specific nucleic acids associated with proteins (SNAAP), 13 potential target mRNAs of zebrafish Dnd (ZDnd) protein were identified from 8-cell embryo, and 8 target mRNAs have been confirmed using an RT-PCR analysis. Of the target mRNAs, the present study is focused on the regulation of geminin, which is an inhibitor of DNA replication. Using electrophoretic mobility shift assay (EMSA), we demonstrated that ZDND protein bound the 67-nucleotide region from 864 to 931 in the 3'UTR of geminin mRNA, a sequence containing 60.29% of uridine. Results from a dual-luciferase assay in HEK293 cells showed that ZDND increases the translation of geminin. Taken together, the identification of target mRNA for ZDnd will be helpful to further explore the biological function of Dnd in zebrafish germ-line development as well as in cancer cells.

Identification of Cisplatin-Resistance Associated Genes through Proteomic Analysis of Human Ovarian Cancer Cells and a Cisplatin-resistant Subline

  • Zhou, Jing;Wei, Yue-Hua;Liao, Mei-Yan;Xiong, Yan;Li, Jie-Lan;Cai, Hong-Bing
    • Asian Pacific Journal of Cancer Prevention
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    • v.13 no.12
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    • pp.6435-6439
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    • 2012
  • Chemoresistance to cancer therapy is a major obstacle to the effective treatment of human cancers with cisplatin (DDP), but the mechanisms of cisplatin-resistance are not clear. In this study, we established a cisplatin-resistant human ovarian cancer cell line (COC1/DDP) and identified differentially expressed proteins related to cisplatin resistance. The proteomic expression profiles in COC1 before and after DDP treatment were examined using 2-dimensional electrophoresis technology. Differentially expressed proteins were identified using matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry (MALDI-TOF-MS) and high performance liquid chromatography-electrospray tandem MS (NanoUPLC-ESI-MS/MS). 5 protein spots, for cytokeratin 9, keratin 1, deoxyuridine triphosphatase (dUTPase), aarF domain containing kinase 4 (ADCK 4) and cofilin1, were identified to be significantly changed in COC1/DDP compared with its parental cells. The expression of these five proteins was further validated by quantitative PCR and Western blotting, confirming the results of proteomic analysis. Further research on these proteins may help to identify novel resistant biomarkers or reveal the mechanism of cisplatin-resistance in human ovarian cancers.

A study on the identification of type IIa natural diamonds treated by the HPHT method (HPHT(고온고압)에 의해 처리된 type IIa 천연 다이아몬드의 감별에 관한 연구)

  • 김영출;최현민
    • Journal of the Korean Crystal Growth and Crystal Technology
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    • v.14 no.1
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    • pp.21-26
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    • 2004
  • Results from PL and Raman spectroscopic analyses of HPHT (high-pressure high-temperature) treated type IIa diamonds are presented, and these spectral characteristics are compared with those of untreated diamonds of similar color and type. We identify a number of significant changes by 325 nm He/Cd laser excitation. Several peaks are removed completely, including H4, H3 system in HPHT treated diamond. The N3 system, however, increased in emission. Also we can find the behaviour of the nitrogen-vacancy related center N-V centers at 575 and 637.1 nm, as observed with 514 nm Ar ion laser excitation. When these centers are present, the FWHM (full width at half maximum) of 637.1 nm luminescence intensities offers a potential means of separating HPHT-treated from untreated type IIa diamonds. The width of 637.1 nm $(N-V)^-$line measured at the position oi half the peak's height are determine to range from 19.8 to $32.1cm^{-1}$ for HPHT treated diamonds.

Low Power UHF Tag Chip Design (저 전력 UHF 태그 칩 설계)

  • Kwon, Hyuk-Je;Lee, Pyeong-Han;Lee, Chul-Hee;Kim, Chong-Kyo
    • Journal of the Institute of Electronics Engineers of Korea SD
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    • v.45 no.12
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    • pp.47-56
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    • 2008
  • An RFID system comprises a reader and a tag, and this paper focuses on a tag design. A UHF tag is activated by energy supply using electromagnetic waves and energy reflection through impedance mismatching. The tag uses a $0.25{\mu}m$ CMOS process and comprises a digital part executing tag protocols, a 512-bit memory, and an analog part having a rectifier, a modulation/demodulation unit, a clock generator, etc. The total dimension of the tag, including a saw line, is $750{\mu}m*750{\mu}m$ and the power consumption of the tag consumption power is about $17.8{\mu}W$ at a supply voltage of 2V.

Anti-proliferative and angio-suppressive effect of Stoechospermum marginatum (C. Agardh) Kutzing extract using various experimental models

  • Vinayak, Rashmi;Puttananjaiah, Shilpa;Chatterji, Anil;Salimath, Bharati
    • Nutrition Research and Practice
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    • v.8 no.4
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    • pp.377-385
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    • 2014
  • BACKGROUND/OBJECTIVES: Abundant consumption of seaweeds in the diet is epidemiologically linked to the reduction in risk of developing cancer. In larger cases, however, identification of particular seaweeds that are accountable for these effects is still lacking, hindering the recognition of competent dietary-based chemo preventive approaches. The aim of this research was to establish the antiproliferative potency and angiosuppressive mode of action of Stoechospermum marginatum seaweed methanolic extract using various experimental models. MATERIALS/METHODS: Among the 15 seaweeds screened for antiproliferative activity against Ehrlich ascites tumor (EAT) cell line, Stoechospermum marginatum extract (SME) was found to be the most promising. Therefore, it was further investigated for its anti-proliferative activity in-vitro against choriocarcinoma (BeWo) and non-transformed Human embryonic kidney (HEK 293) cells, and for its anti-migratory/tube formation activity against HUVEC cells in-vitro. Subsequently, the angiosuppressive activity of S. marginatum was established by inhibition of angiogenesis in in-vivo (peritoneal angiogenesis and chorioallantoic membrane assay) and ex-vivo (rat cornea assay) models. RESULTS: Most brown seaweed extracts inhibited the proliferation of EAT cells, while green and red seaweed extracts were much less effective. According to the results, SME selectively inhibited proliferation of BeWo cells in-vitro in a dose-dependent manner, but had a lesser effect on HEK 293 cells. SME also suppressed the migration and tube formation of HUVEC cells in-vitro. In addition, SME was able to suppress VEGF-induced angiogenesis in the chorio allantoic membrane, rat cornea, and tumor induced angiogenesis in the peritoneum of EAT bearing mice. A decrease in the microvessel density count and CD31 antigen staining of treated mice peritoneum provided further evidence of its angiosuppressive activity. CONCLUSIONS: Altogether, the data underline that VEGF mediated angiogenesis is the target for the angiosuppressive action of SME and could potentially be useful in cancer prevention or treatment involving stimulated angiogenesis.

Automatic Identification of Database Workloads by using SVM Workload Classifier (SVM 워크로드 분류기를 통한 자동화된 데이터베이스 워크로드 식별)

  • Kim, So-Yeon;Roh, Hong-Chan;Park, Sang-Hyun
    • The Journal of the Korea Contents Association
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    • v.10 no.4
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    • pp.84-90
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    • 2010
  • DBMS is used for a range of applications from data warehousing through on-line transaction processing. As a result of this demand, DBMS has continued to grow in terms of its size. This growth invokes the most important issue of manually tuning the performance of DBMS. The DBMS tuning should be adaptive to the type of the workload put upon it. But, identifying workloads in mixed database applications might be quite difficult. Therefore, a method is necessary for identifying workloads in the mixed database environment. In this paper, we propose a SVM workload classifier to automatically identify a DBMS workload. Database workloads are collected in TPC-C and TPC-W benchmark while changing the resource parameters. Parameters for SVM workload classifier, C and kernel parameter, were chosen experimentally. The experiments revealed that the accuracy of the proposed SVM workload classifier is about 9% higher than that of Decision tree, Naive Bayes, Multilayer perceptron and K-NN classifier.

Identification of Three Competitive Inhibitors for Membrane­Associated, $Mg^{2+}-Dependent$ and Neutral 60 kDa Sphingomyelinase Activity

  • Kim Seok Kyun;Jung Sang Mi;Ahn Kyong Hoon;Jeon Hyung Jun;Lee Dong Hun;Jung Kwang Mook;Jung Sung Yun;Kim Dae Kyong
    • Archives of Pharmacal Research
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    • v.28 no.8
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    • pp.923-929
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    • 2005
  • Methanol extracts of domestic plants of Korea were evaluated as a potential inhibitor of neutral pH optimum and membrane-associated 60 kDa sphingomyelinase (N-SMase) activity. In this study, we partially purified N-SMase from bovine brain membranes using ammonium sulfate. It was purified approximately 163-fold by the sequential use of DE52, Butyl-Toyopearl, DEAE-Cellulose, and Phenyl-5PW column chromatographies. The purified N-SMase activity was assayed in the presence of the plant extracts of three hundreds species. Based on the in vitro assay, three plant extracts significantly inhibited the N-SMase activity in a time- and concentration-dependent manner. To further examine the inhibitory pattern, a Dixon plot was constructed for each of the plant extracts. The extracts of Abies nephrolepis, Acer tegmentosum, and Ginkgo biloba revealed a competitive inhibition with the inhibition constant (Ki) of $11.9 {\mu}g/mL,\;9.4{\mu}g/mL,\;and\;12.9{\mu}g/mL$, respectively. These extracts also inhibited in a dose-dependent manner the production of ceramide induced by serum deprivation in human neuroblastoma cell line SH-SY5Y.

Design and Implementation of Index Structure for Tracing of RFID Tag Objects (RFID 태그 객체의 위치 추적을 위한 색인 구조의 설계 및 구현)

  • Kim, Dong-Hyun;Lee, Gi-Hyoung;Hong, Bong-Hee;Ban, Chae-Hoon
    • Journal of Korea Spatial Information System Society
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    • v.7 no.2 s.14
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    • pp.67-79
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    • 2005
  • For tracing tag locations, the trajectories should be modeled and indexed in a radio frequency identification (RFID) system. The trajectory of a tag is represented as a line that connects two spatiotemporal locations captured when the tag enters and leaves the vicinity of a reader. If a tag enters but does not leave a reader, its trajectory is represented only as a point captured at entry. Because the information that a tag stays in a reader is missing from the trajectory represented only as a point, it is impossible to find the tag that remains in a reader. To solve this problem we propose the data model in which trajectories are defined as intervals and new index scheme called the Interval R-tree. We also propose new insert and split algorithms to enable efficient query processing. We evaluate the performance of the proposed index scheme and compare it with the R-tree and the R*-tree. Our experiments show that the new index scheme outperforms the other two in processing queries of tags on various datasets.

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