• Title/Summary/Keyword: occurrence pattern

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Statistical Characterization of the Multi-Charged Fragment Ions in the CID and HCD Spectrum

  • Ramachandran, Sangeetha;Thomas, Tessamma
    • Mass Spectrometry Letters
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    • v.12 no.2
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    • pp.41-46
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    • 2021
  • Collision-induced dissociation (CID) and higher-energy collisional dissociation (HCD) are the widely used fragmentation technique in mass spectrometry-based proteomics studies. Understanding the fragmentation pattern from the tandem mass spectra using statistical methods helps to implement efficient spectrum analysis algorithms. The study characterizes the frequency of occurrence of multi-charged fragment ions and their neutral loss events of doubly and triply charged peptides in the CID and HCD spectrum. The dependency of the length of the fragment ion on the occurrence of multi-charged fragment ion is characterized here. Study shows that the singly charged fragment ions are generally dominated in the doubly charged peptide spectrum. However, as the length of the product ion increases, the frequency of occurrence of charge 2 fragment ions increases. The y- ions have more tendencies to generate charge 2 fragment ions than b- ions, both in CID and HCD spectrum. The frequency of occurrence of charge 2 fragment ion peaks is prominent upon the dissociation of the triply charged peptides. For triply charged peptides, product ion of higher length occurred in multiple charge states in CID spectrum. The neutral loss peaks mostly exist in charge 2 states in the triply charged peptide spectrum. The b-ions peaks are observed in much less frequency than y-ions in HCD spectrum as the length of the fragment increases. Isotopic peaks are occurred in charge 2 state both in doubly and triply charged peptide's HCD spectrum.

Optimal Moving Pattern Mining using Frequency of Sequence and Weights (시퀀스 빈발도와 가중치를 이용한 최적 이동 패턴 탐사)

  • Lee, Yon-Sik;Park, Sung-Sook
    • Journal of Internet Computing and Services
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    • v.10 no.5
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    • pp.79-93
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    • 2009
  • For developing the location based service which is individualized and specialized according to the characteristic of the users, the spatio-temporal pattern mining for extracting the meaningful and useful patterns among the various patterns of the mobile object on the spatio-temporal area is needed. Thus, in this paper, as the practical application toward the development of the location based service in which it is able to apply to the real life through the pattern mining from the huge historical data of mobile object, we are proposed STOMP(using Frequency of sequence and Weight) that is the new mining method for extracting the patterns with spatial and temporal constraint based on the problems of mining the optimal moving pattern which are defined in STOMP(F)[25]. Proposed method is the pattern mining method compositively using weighted value(weights) (a distance, the time, a cost, and etc) for our previous research(STOMP(F)[25]) that it uses only the pattern frequent occurrence. As to, it is the method determining the moving pattern in which the pattern frequent occurrence is above special threshold and the weight is most a little bit required among moving patterns of the object as the optimal path. And also, it can search the optimal path more accurate and faster than existing methods($A^*$, Dijkstra algorithm) or with only using pattern frequent occurrence due to less accesses to nodes by using the heuristic moving history.

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A Study on the Occurrence Characteristics of Usage Pattern in Outdoor Spaces inside High-Rise Apartment Housing Estates (고층아파트 단지 외부공간의 이용행태 발생특성에 관한 연구)

  • Kwak, Youn-Chung
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.13 no.4
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    • pp.1872-1879
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    • 2012
  • By analyzing the use of outdoor space in apartment complex and finding empirical proof which is concrete and systemic, this study focuses on the relationship between residents' daily lives and physical space. This study tries to find out the types and characteristics of outdoor space which causes the occurrence of residents' use in High-Rise apartment housing Estates, and analyzes the residents' usage pattern of outdoor space in eight different apartment complexes which were builted since 2004. After analyzing the usage pattern of outdoor space, the usage of playground was ranked highest and playing, talking, exercising, resting was in order. Especially it was found that the usage inside semi-public space where passing is abundant increases.

Characterization of the Fragmentation Pattern of Peptide from Tandem Mass Spectra

  • Ramachandran, Sangeetha;Thomas, Tessamma
    • Mass Spectrometry Letters
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    • v.10 no.2
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    • pp.50-55
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    • 2019
  • The fragmentation statistics of ion trap CID (Collision-Induced Dissociation) spectra using 87,661 tandem mass spectra of doubly charged tryptic peptides are analyzed here. In contrast to the usual method of using intensity information, the frequency of occurrence of fragment ions, with respect to the position of the cleavage site and the residues at these sites is studied in this paper. The analysis shows that the frequency of occurrence of fragment ion peaks is more towards the middle of the peptide than its ends. It was noted that amino acid with an aromatic and basic side chain at N- & C- terminal end of the peptide stimulates more peaks at the lower end of the spectrum. The residue pair effect was shown when the amide bond occurs between acidic and basic residues. The fragmentation at these sites (D/E-H/R/K) stimulates the generation of the y-ion peak. Also, the cleavage site H-H/R/K stimulates the generation of b-ions. K-P environment in the peptide sequence has more tendency to generate y-ions than b-ions. Statistical analysis helps in the visualization of the CID fragmentation pattern. Cleavage pattern along the length of the peptide and the residue pair effects, enhance the knowledge of fragmentation behavior, which is useful for the better interpretation of tandem mass spectra.

A study on the Relation between Strain & Conductivity of the Printed Pattern in Post-Printing Section of Roll to Roll process (롤투롤 공정의 인쇄 후 구간에서 변형률과 인쇄한 패턴의 전기 전도도와의 관계에 대한 연구)

  • Choi, Jae-Ho;Lee, Chang-Woo;Shin, Kee-Hyun
    • Journal of Institute of Control, Robotics and Systems
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    • v.15 no.9
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    • pp.877-880
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    • 2009
  • A curing process in post-printing section of R2R process is required for an electrical property of the printed pattern when devices such as RFID, Solar cell are printed. PEN as well as heat-stabilized PET which is used as a plastic substrate would be deformed at high temperature due to change of its elastic modulus. And crack in the printed pattern, which is on the plastic substrate is occurred due to the deformation of the substrate. The occurrence of crack causes electrical resistance to increase and the quality of the device to deteriorate. In case of RFID antenna, the range of reading distance is shortened as the electrical resistance of the antenna is increased. Therefore, the deformation of the plastic substrate, which causes the occurrence of crack, should be minimized by setting up low operating tension in R2R process. In low tension, slippage between a moving substrate and a roller would be generated when the operating speed is increased. And scratch would be occurred when slippage is generated due to an air entrainment, which is related to the thickness of the air film. The thickness of the air film is increased when operating speed is increased as shown by simulation based on mathematical model. The occurrence of scratch in conductive pattern printed by roll to roll process is a critical damage because it causes degradation or failure of electrical property of it.

Occurrence Pattern and Damage of Scirtothrips dorsalis (Thysanoptera: Thripidae) in Primary Host and Citrus Orchards on Jeju Island (제주도에서 볼록총채벌레의 1차 기주식물 과원과 감귤원에서 발생양상과 피해)

  • Hwang, Rok-Yeun;Kim, Dong-Soon;Hyun, Jae-Wook
    • Korean journal of applied entomology
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    • v.55 no.4
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    • pp.483-487
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    • 2016
  • The damage of citrus fruits caused by Scirtothrips dorsalis Hood has being increased in Jeju, Korea. The seasonal abundance of S. dorsalis and its injury symptoms in citrus orchards have been studied since the endemic outbreak in Jeju, but studies for the occurrence pattern of S. dorsalis in citrus orchards influenced by adjacent primary hosts have not been fully conducted yet. We selected kiwi- and mango-citrus adjacent orchards to study the migration pattern of S. dorsalis toward to citrus orchards. Yellow-colored sticky traps were used for monitoring the seasonal abundance of S. dorsalis and their migration pattern in two orchards. In citrus orchards, also, we placed sticky traps at 0, 5, 10, 15 and 20 m apart from the border of kiwi orchard, and 0, 7 and 20 m apart from the border of mango orchard. The seasonal occurrence pattern of S. dorsalis caught on sticky traps were similar between two adjacent orchards. However, the abundances in kiwi or mango orchard was much higher than those of citrus. Also, it was found that densities, distribution and damage of S. dorsalis in citrus orchards depend highly on the distance from the border of kiwi and mango orchards. This result suggested that the primary hosts such as kiwi and mango plants influence the occurrence of S. dorsalis in adjacent citrus orchards. And this information may provide a basic direction for establishing the management strategy of S. dorsalis in citrus orchards.

A Study on Occurrence of Backache Related to Types of Daily Activities in Adulthood (성인의 활동형태와 관련된 요통발생에 관한 조사연구)

  • Hur, Young
    • Journal of Korean Academy of Nursing
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    • v.8 no.1
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    • pp.99-110
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    • 1978
  • For the study on occurrence of backache related to types of daily activities in adulthood Nine hundred twenty six adults living in Seoul were randomly selected as subjects from the eight kinds of occupation; housewives, teachers, nurses, officers, physicians, labourers, beauticians & barbers, and students. The purpose of this study was to identify various factors related to backache in daily activities and to apply these factors in clinical situations as well as in the community situations. This survey was conducted from September 21 through October 8, 1976. Under the ten hypothesis designed for this study, the. followings were obtained; 1. Significant difference on occurrence of backache was revealed according to sex difference at 0.5% level. (x$^2$= 27.85, df: 1, p<0.005) 2. Significant difference on occurrence of backache was revealed according to age groups at 2.5% level. (x$^2$= 11.13, df= 3, p<0.025) 3. Significant difference on occurrence of backache was revealed according to types of occupation at 2.5% level. (x$^2$= 18.04, df: 7, p<0.025) 4. Significant difference on occurrence of backache was revealed according to types of movement originated by hand during occupational activities at 1% level. (x$^2$= 14.23, df= 4, p<0.01) 5, Significant difference on occurrence of backache was revealed according to types f movement of legs during occupational activities at 0.5% level. x$^2$= 20.78, df: 3, p<0.005) . No significant difference on occurrence of backache was revealed according to length f daily working hours. . Significant difference on occurrence of backache was revealed according to degree of exercises at the level. x$^2$= 6.01, df= 2, p<0.05) . Significant difference on occurrence of backache was revealed according to sleeping posture at 1% level. x$^2$= 9.61, df: 2, p<0.01). Significant difference on occurrence of backache was revealed according to ordinary pattern of mean posture score at 0.5% level. (t : 4.27, df: 924, p<0.005) 10. Significant difference was revealed mean posture scores according to period of backache history at 0.5% level. (f- ratio = 3.73, df= 4, 562 p<0.005).

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Multivariate assessment of the occurrence of compound Hazards at the pan-Asian region

  • Davy Jean Abella;Kuk-Hyun Ahn
    • Proceedings of the Korea Water Resources Association Conference
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    • 2023.05a
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    • pp.166-166
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    • 2023
  • Compound hazards (CHs) are two or more extreme climate events combined which occur simultaneously in the same region at the same time. Compared to individual hazards, the combination of hazards that cause CHs can result in greater economic losses and deaths. While several extreme climate events have been recorded across Asia for the past decades, many studies have only focused on a single hazard. In this study, we assess the spatiotemporal pattern of dry compound hazards which includes drought, heatwave, fire and wind across Asia for the last 42 years (1980-2021) using the historical data from ERA5 Reanalysis dataset. We utilize a daily spatial data of each climate event to assess the occurrence of such compound hazards on a daily basis. Heatwave, fire and wind hazard occurrences are analyzed using daily percentile-based thresholds while a pre-defined threshold for SPI is applied for drought occurrence. Then, the occurrence of each type of compound hazard is taken from overlapping the map of daily occurrences of a single hazard. Lastly, a multivariate assessment are conducted to quantify the occurrence frequency, hotspots and trends of each type of compound hazard across Asia. By conducting a multivariate analysis of the occurrence of these compound hazards, we identify the relationships and interactions in dry compound hazards including droughts, heatwaves, fires, and winds, ultimately leading to better-informed decisions and strategies in the natural risk management.

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A Finger Dermatoglyphics of the New Zealand-Samoans

  • Cho, Ching
    • Animal cells and systems
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    • v.2 no.4
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    • pp.507-511
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    • 1998
  • Fingerprints of 100 New Zealand-Samoan males and 93 females have been analyzed. Whorls are more numerous in fingerprint females (65.6%) than in males (55.6%). The index of pattern intensity displays a higher value in females (16.49) than in males (15.48). The bimanual differences both in males and females are not statistically significant for the occurrence of patterns on the digits of the right and left hands. Also the difference between both sexes for the occurrence of patterns is not statistically significant. Incidences of actual symmetry on homologous digits represented 78.2% in males and 85.8% in females. The mean total ridge counts showed $175.7{\pm}54.6$ ($M{\pm}SD$) in males and $171.6\{pm}49.8$ ($M{\pm}SD$) in females, respectively. Conclusively, this study shows that the New Zealand-Samoans are closely related to the Mongoloids in quantitative dermatoglyphics.

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Seasonal Change in the Reproductive Pattern of the Marine Cladoceran Podon polyphemoides in Korean Waters

  • YOO Kwang-Il;KIM Se-Wha
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.23 no.2
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    • pp.141-144
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    • 1990
  • Seasonal change in the reproductive pattern of the marine Cladoceran Podon polyphemoides, was studied using materials collected monthly during the period from January to December 1986 in Yongil Bay, Korea. The relative abundance of P. polyphemoides exceeded $10\%$ of total zooplankton in July. While the species remained as a minor components of the zooplankton community during the other periods of occurrence from June to December. Occurrence of sexual individuals of P. polyphemoides (males and gamogenetic females) in higher proportion in cold months ($30\%$ in November and $40\%$ in December) suggests that resting egg production of this species is largely confined to cold monthis in Korean waters as an overwintering strategy.

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