• Title/Summary/Keyword: non-metric multidimensional scaling (MDS)

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Annual Variations in Community Structure of Mesozooplankton by Short-term Sampling in Jangmok Harbor of Jinhae Bay (진해만의 장목항에서 단주기 샘플링에 의한 중형동물플랑크톤 군집의 연변동)

  • Hwang, Ok-Myung;Shin, Kyoung-Soon;Baek, Seung-Ho;Lee, Woo-Jin;Kim, Su-Am;Jang, Min-Chul
    • Ocean and Polar Research
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    • v.33 no.3
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    • pp.235-253
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    • 2011
  • The annual variation of mesozooplankton community in the Jangmok harbor of Jinhae Bay was studied in relation to environmental variables. Sampling was carried out weekly from January to December 2009. During the study periods, mesozooplankton community consisted of 44 taxa and the annual mean abundance was 8308 inds. $m^{-3}$. The maximum abundance was observed to be 50043 inds. $m^{-3}$ in August and the minimum in April with 1013 inds. $m^{-3}$. Of these, Penilia avirostris, cirripedia larvae, Evadne tergestina, Acartia omorii, Oikopleura s, Paracalanus parvus s. l., Eurytemora pacifica, Podon s, Oithona s, and Acartia steueri were observed as dominant species in Jangmok bay and they also contributed to 79% of total mesozooplankton. According to non-metric multidimensional scaling (nMDS) and cluster analysis based on the mesozooplankton community data from each season, the community was divided into three groups. The first group included appearence species in winter and spring season, which is mainly dominated the copepod such as A. omorii and E. pacifica. The second and third group was composed with observed species in summer and autumn, respectively. Based on the SIMPER (similarity percentages), P. avirostris in summer and cirripedia larvae in autumn were significantly dominated. Our results indicate that although the mesozooplankton abundances in Jangmok harbor fluctuated abruptly, its annual variation was strongly influenced by water temperature.

Distribution Patterns of Sandy Bottom Macrobenthic Community on the Hupo Coastal Area, in the East Sea of Korea (동해 후포주변 사질조하대에 서식하는 대형저서동물군집의 분포특성)

  • Paik, Sang-Gyu;Kang, Rae-Seon;Jeon, Jae-Ok;Lee, Jae-Hac;Yun, Sung-Gyu
    • Ocean and Polar Research
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    • v.29 no.2
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    • pp.123-134
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    • 2007
  • Distribution patterns of sandy bottom macrobenthic communities were studied around the Hupo coastal area. The seasonal surveys were conducted at 15 chosen sites within a depth range of 10 to 50 m along 10 km of the coastline using a Smith-McIntyre grab $(0.05\;m^2)$ in 2005. Overall depth distribution following the direction of the offshore become deeper parallel to the coastline. A total of 319 macrobenthic species were sampled with a mean density of $1,972\;ind./m^2$, and mean biomass was 82.5 wet-weight $g/m^2$. The major individual-dominant species were three polychaetes Spiophanes bombyx ($436\;ind./m^2$), Scoletoma longifolia ($250\;ind./m^2$) and Magelona japonica ($170\;ind./m^2$), and bivalve Adontorhina subquadrata ($73\;ind./m^2$). Cluster analysis and non-metric multidimensional scaling (nMDS) analysis based on Bray-Curtis similarity identified 2 major station groups which corresponded to macrobenthic faunal assemblages and their characteristic species. In addition, environmental conditions were significantly different between station groups. Group I contained mostly 20 and 50 m deep sites and was associated with sandy mud. Group I was characterized by high abundance of S. bombyx, S. longifolia, A. subquadrata. It was divided into two sub-groups (I-I and I-II) in relation to depth. Sub-group I-I was associated with deeper sites than sub-group I-II. Group II included mostly inshore area shallower than 15 m and was associated with coarse and medium sand. Group II was characterized by Lumbrinerides hayashii and Urothoe grimaldii japonica.

Seasonal Variation of Zooplankton Communities in the Southern Coastal Waters of Korea (남해 연안 동물플랑크톤 군집의 계절변동)

  • Moon, Seong-Yong;Oh, Hyun-Ju;Soh, Ho-Young
    • Ocean and Polar Research
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    • v.32 no.4
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    • pp.411-426
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    • 2010
  • The seasonal variations in the zooplankton community of the southern coastal waters of Korea were investigated seasonally in May, August, November 2005, and February 2006. A total of 74 taxa were sampled, with an average abundance ranging from 2,426~23,793 indiv./$m^3$, among which Noctiluca scintillans predominated. Noctiluca scintillans, Acartia omorii, Acartia erythraea, Paracalanus parvus s. l., Centropages abdominalis, Tortanus forcipatus, and Pseudevadne tergestina were the most abundant species detected. Zooplankton diversity was high around the inner regions during the summer, but it was relatively low in the stations located in the outer regions in the autumn. Non-metric multidimensional scaling (nMDS) revealed significant differences in the structures of the zooplankton community among the three regions. Our results showed that the seasonal variations in zooplankton communities in the southern coastal waters of Korea were attributable to seasonal changes in temperature, salinity, chlorophyll a concentrations, and N. scintillans blooms; additionally, this particularly study area might have been specifically influenced by the appearance of the Tsushima Warm Current.

Spatial and Temporal Distribution and Characteristics of Zooplankton Communities in the Southern Coast of Korea from Spring to Summer Period (봄과 여름철의 남해안 동물플랑크톤 시·공간적 분포와 군집 특성)

  • Moon, Seong Yong;Lee, Mi Hee;Jung, Kyung Mi;Kim, Heeyong;Jung, Jin Ho
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.55 no.2
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    • pp.154-170
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    • 2022
  • The zooplankton composition, abundance, community structure, and species diversity in the major commercial fishery species spawning grounds in the southern coast of Korea were investigated in this study. A total of 80 taxa were sampled, with the mean abundance range of 5,612-11,720 ind. m-3 and the mean biomass range of 41.6-1,086.8 mg m-3. The dominant species were Paracalanus copepodites, Paracalanus parvus s. l., Oithona copepodites, Paracalanus nauplii, Noctiluca scintillans, Oithona similis, and Ditrichocorycaeus affinis. The species diversity indices were highest in August, suggesting that diversity is influenced by neritic and oceanic warm-water species. A cluster analysis with non-metric multidimensional scaling (nMDS) revealed three groups of zooplankton communities. The April and May samples clustered into Group A, having the highest mean total zooplankton abundance and lowest species diversity, consisting mainly of temperate species located in the middle region of the southern coast of Korea. Cluster Group B was from the early summer season (June) and contained the highest species diversity with some oceanic and neritic zooplankton species. Cluster Group C from the summer season (July and August) mainly comprised P. parvus s. l. and O. similis. The redundancy analysis (RDA) indicated that abundance is positively correlated with salinity, and chlorophyll-a concentrations.

Distribution Changes of Freshwater Microalgae Community in the Nakdonggang River, Korea (낙동강 담수 미세조류 군집 분포 변화)

  • Suk Min Yun;Dae Ryul Kwon;Mirye Park;Chang Soo Lee;Sang Deuk Lee
    • Journal of Korean Society on Water Environment
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    • v.39 no.2
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    • pp.181-193
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    • 2023
  • Distribution changes in microalgae communities were studied in the Nakdonggang River at two sampling stations (St.1 Gyeongcheongyo Bridge (GB) and St.2 Daedong Wharf (DW)) at monthly intervals from January 2021 to November 2021. A total of 83 taxa included 82 species, 1 forma, belonging to 49 genera, 32 families, 21 orders, and 8 classes. The most important groups were Bacillariophyta and Chlorophyta. The number of species ranged from 5 to 24 in GB, and from 9 to 21 taxa in DW. The contribution of Bacillariophyta to the total species richness was the highest during all survey periods, and Chlorophyta yielded the next highest value in the study area. The dominant taxa were Aulacoseira ambigua, A. ambigua f. japonica, and Ulnaria acus in this study. Cluster analysis and non-metric multidimensional scaling (nMDS) analysis based on Bray- Curtis similarity identified 4 major groups, which corresponded to microalgae assemblages and their characteristic species. Correlation was analyzed through the CCA analysis. It was found that there was a correlation between the microalgae and environmental factors. It was revealed that the divided groups were distinguished because of the differences by the survey period. Therefore, seasonal change was judged as a major factor affecting the distribution of microalgae communities.

Seasonal Variation of Larval Fish Community in Jinhae Bay, Korea (진해만 자어 군집의 계절 변동)

  • Moon, Seong Yong;Lee, Jeong-Hoon;Choi, Jung-Hwa;Ji, Hwan Sung;Yoo, Joon-Taek;Kim, Jung-Nyun;Im, Yang Jae
    • Korean Journal of Environmental Biology
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    • v.36 no.2
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    • pp.140-149
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    • 2018
  • Seasonal variations in the community structure of larval fish assemblage in Jinhae Bay were investigated in February, May, August and November of 2015, and in the same months in 2016. During the study period, a total of 28 larvae species belonging to 24 families were collected. The dominant species were Clupea pallasii, Liparis tanakae, Callionymidae sp., Sillago japonica, Ernogrammus hexagrammus and Engraulis japonica. These six species accounted for 77.6% of the total number of larvae during the survey period. The larvae of C. pallasii and L. tanakae were exclusively caught in February 2015 and 2016, while those of Apogon lineatus and Sillago japonica were exclusively caught in August 2015 and 2016. Overall, species diversity of the fish larvae was highest in February and August, although it was relatively low in May. The results of the non-metric multidimensional scaling (nMDS) analysis using the number of individual larval fish showed that they are divided into four seasonal groups. Our results showed that the community of larval fish in Jinhae Bay was affected by seasonal changes in temperature and the emergence of spawning fish species. Additionally, we suggest that the high abundance of larval fish came from around Jam-do and the northern part of Chilcheon-do; these locations are the main spawning grounds of Jinhae Bay.

Feeding Relationship between Co-occurring Silver Croaker (Pennahia argentata) and Japanese Sillago (Sillago japonica) in the Nakdong River Estuary, Korea (낙동강 하구역에 출현하는 보구치(Pennahia argentata)와 청보리멸(Sillago japonica)의 섭식관계)

  • Huh, Sung-Hoi;Choi, Hee Chan;Park, Joo Myun
    • Korean Journal of Ichthyology
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    • v.30 no.4
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    • pp.224-231
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    • 2018
  • Dietary niches can support the coexistence of sympatric species in marine ecosystems, which can lead to the presence of greater abundances of those species. Stomach contents of silver croaker (Pennahia argentata) and Japanese sillago (Sillago japonica) inhabiting the Nakdong River estuary, Korea were analyzed to determine diet compositions and the presence of any size-related and inter-specific feeding relationships. These species were bottom-feeding predators that consumed mainly benthic crustaceans and mollusks, but polychaetes were also important in the S. japonica diets. Non-metric multidimensional scaling (nMDS) ordination and multivariate analyses based on weight contributions of the different prey taxa to stomach contents revealed significant inter-specific dietary differences. Size-related change was also significant for P. argentata diets, but not for S. japonica. Canonical analysis of principal coordinate (CAP) ordination plot further demonstrated that differences in the type and range of prey ingested by the two species contributed such an inter-specific difference in the diet compositions. The results from this study provide clear evidence of niche segregation between co-occurring P. argentata and S. japonica in the Nakdong River estuary, which would reduce the likelihood of inter-specific competition for food resources.

The Habitat Classification of mammals in Korea based on the National Ecosystem Survey (전국자연환경조사를 활용한 포유류 서식지 유형의 분류)

  • Lee, Hwajin;Ha, Jeongwook;Cha, Jinyeol;Lee, Junghyo;Yoon, Heenam;Chung, Chulun;Oh, Hongshik;Bae, Soyeon
    • Journal of Environmental Impact Assessment
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    • v.26 no.2
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    • pp.160-170
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    • 2017
  • The purpose of this study is to perform clustering of the habitat types and to identify the characteristics of species in the habitat types using mammal data (70,562) of the 3rd National Ecosystem Survey conducted from 2006 to 2012. The 15 habitat types recorded in the field-paper of the 3rd National ecosystem survey were reclassified, which was followed by the statistical analysis of mammal habitat types. In the habitat types cluster analysis, non-hierarchical cluster analysis (k-means cluster analysis), hierarchical cluster analysis, and non-metric multidimensional scaling method were applied to 14 habitat types recorded more than 30 times. A total of 7 Orders, 16 Families, and 39 Species of mammals were identified in the 3rd National Ecosystem Survey collected nationwide. When 11 clusters were classified by habitat types, the simple structure index was the highest (ssi = 0.07). As a result of the similarities and hierarchies between habitat types suggested by the hierarchical clustering analysis, the residential areas were the most different habitat types for mammals; the next following type was a cluster together with rivers and coasts. The results of the non-metric multidimensional scaling analysis demonstrated that both Mus musculus and Rattus norvegicus restrictively appeared in a residential area, which is the most discriminating habitat type. Lutra lutra restrictively appeared in coastal and river areas. In summary, according to our results, the mammalian habitat can be divided into the following four types: (1) the forest type (using forest as the main habitat and migration route); (2) the river type (using water as the main habitat); (3) the residence habitat (living near residential area); and (4) the lowland type (consuming grain or seeds as the main feeding resource).

Seasonal Variations in the Species Composition of Fisheries Resources Caught by Trammel Net in the Uljin Marine Ranching Area, East Sea (울진바다목장에서 자망으로 어획된 수산자원의 종조성과 계절변동)

  • Yoon, Byoung Sun;Park, Jeong-Ho;Yoon, Sang Chul;Yang, Jae Hyeong;Lee, Sung-Il;Kim, Jong-Bin;Choi, Young-Min;Sohn, Myoung Ho
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.48 no.6
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    • pp.947-959
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    • 2015
  • Variations in the species composition, biomass and size distribution of fisheries resources in the Uljin marine ranching area were investigated using trammel nets at two stations (artificial reef and natural rocky area) from 2009 to 2010. During the survey, a total of 74 species were sampled with a mean density of 132 ind./net and mean biomass of 21.56 kg/net. In the natural rocky area, a total of 45 species were sampled at a mean density of 202 ind./net and mean biomass of 28.81 kg/net, while in the artificial reef area, samples included a total of 56 species, with means of 62 ind./net and 14.30 kg/net. The dominant species, comprising over 3% of the total number of individuals, were Suberites ficus (30.8%), Ovalipes punctatus (19.2%), Paralichthys olivaceus (11.7%), Pleuronectes herzensteini (4.7%), Kareius bicoloratus (3.5%), Pseudopleuronectes yokohamae (3.5%) and Eopsetta grigorjewi (3.0%). The dominant species, in terms of biomass, comprising over 5% of the total biomass, were P. olivaceus (22.1%), S. ficus (18.7%), O. punctatus (7.2%), Hexagrammos otakii (6.6%), P. yokohamae (5.7%), K. bicoloratus and P. herzensteini (5.3%). A cluster analysis and non-metric multidimensional scaling (nMDS) analysis based on the Bray-Curtis similarity of fourth root transformed data for number of species and individuals, was divided into two groups: the artificial reef area (group A) and the natural rocky area (group B).

Seasonal variations in species composition of fish assemblage collected by trammel net in coastal waters of the East Sea (동해 연안 자망에서 채집된 어류 종조성의 계절변동)

  • Choi, Kwang Ho;Han, Moon Hee;Kang, Chang-Keun;Park, Joo Myun;Choi, Jung Hwa;Park, Jeong-Ho;Sohn, Myong Ho;Baeck, Gun Wook;Choy, Eun Jung;Lee, Chung Il
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.48 no.4
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    • pp.415-427
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    • 2012
  • Seasonal variation in species composition and abundance of fish assemblage in the north coast (NC: Ayajin) and central coast (CC: Hupo) of the East Sea were calculated using samples collected by trammel net during 2011-2012. A total of 20 species from NC and 17 species from CC were collected. Of the fishes collected, the dominant fish species were Glyptocephalus stelleri and Careproctus rastrinus in the NC, and Dasycottus setiger and G. stelleri in the CC. These 2 fishes accounted for 71.7% and 81.0% of the total number of individuals collected in the NC and CC, respectively. The number of fish species, number of individuals, biomass and species diversity indices fluctuated with the seasons. The cluster analysis and non-metric multidimensional scaling (MDS) based on Bray-Curtis similarity revealed that the fish assemblages classified into north and central groups. Analysis of similarity percentages of species contributions (SIMPER) indicated that most individual of G. stelleri and Gadus macrocephalus contributed to north group, and D. setiger and G. stelleri in central group, whereas 15 species contributed to 90% of the dissimilarity.