• Mycobiology
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• 제29권3호
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• pp.132-134
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• 2001

Since it is known that Agrobacterium tumefaciens, which has long been used to transform plants, can transfer the T-DNA to yeast Saccharomyces cerevisiae during tumourigenesis, a variety of fungi were subjected to transformation to improve their transformation frequency. In this study, I report the A. tumefaciens-mediated transformation of filamentous fungus Aspergillus niger. Transfer of the binary vector pBIN9-Hg, containing the bacterial hygromycin B phosphotransferase gene under the control of the Aspergillus nidulans trpC promoter and terminator as a selectable marker, led to the selection of $50{\sim}100$ hygromycin B-resistant transformants per $1{\times}10^7$ conidia of A. niger. This efficiency is improved $10{\sim}20$ fold more than reported elsewhere. In order to avoid the difficulties in selection transformant from the over-growing non-transformant, I used top agar containing 900 ${\mu}g/ml$ of hygromycin. Genomic PCR and Southern analysis showed that all transformants contained single T-DNA insert per fungal genome. This technique offers an easier and more efficient method than that of using protoplast.

• Genomics & Informatics
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• 제13권3호
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• pp.86-89
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• 2015

Because there are clear molecular differences entailing different treatment effectiveness between Korean and non-Korean cancer patients, identifying distinct molecular characteristics of Korean cancers is profoundly important. Here, we report a web-based data repository, namely Korean Cancer Genome Database (KCGD), for searching gene signatures associated with Korean cancer patients. Currently, a total of 1,403 cancer genomics data were collected, processed and stored in our repository, an ever-growing database. We incorporated most widely used statistical survival analysis methods including the Cox proportional hazard model, log-rank test and Kaplan-Meier plot to provide instant significance estimation for searched molecules. As an initial repository with the aim of Korean-specific marker detection, KCGD would be a promising web application for users without bioinformatics expertise to identify significant factors associated with cancer in Korean.

• 대한예방의학회:학술대회논문집
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• 대한예방의학회 1994년도 교수 연수회(역학)
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• pp.158-163
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• 1994

Slightly elevated urinary albumin excretion rate (microalhuminuria) is a marker of early diabectic nephropathy, but it is unclear if the established definition of microalbuminuria ($20-200{\mu}g/min$) is correct for children and adolescents. We investigated th.: albumin excretion rate, albumin/creatinine ratio and urinary albumin concentration in 150 healthy schoolchildren and adolescents to (a) obtain a reterence value for albumin excretion rate, (b) relate albumin excretion to pubertal stages and (c) evaluate albumin/creatinine ratio and morning albumin concentration as screening methods for elevated albumin excretion rate. Albumin concentration was measured by immunoturbidimetry in timed overnight urine samples. The albumin excretion showed a skewed distribution (geometric mean $3.2{\mu}g/min$, 95 percentile ($15.1{\mu}g/min$). In girls. a peak in the albumin excretion rate was found at the pubertal stage 4 (Tanner) and in boys at stage 5. Albumin/creatinine ratio of 2.5 mg/mmol as a screening level for elevated albumin excretion ($15{\mu}g/min$) showed a high positive (0.88) and negative (0.99) predictive value.

• 유체기계공업학회:학술대회논문집
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• 유체기계공업학회 1999년도 유체기계 연구개발 발표회 논문집
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• pp.163-169
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• 1999

The numerical procedure has been developed for simulating incompressible viscous flow around a turbine stage with rotor-stator interaction. This study solves 2-D unsteady incompressible Navier-Stokes equations on a non-orthogonal curvilinear coordinate system. The Marker-and-Cell concept is applied to efficiently solve continuity equation. To impose an accurate boundary condition, O-H multiblocked grid system is generated. O-type grid and H-type grid is generated near and outer rotor-stator The cubic-spline interpolation is applied to handle a relative motion of a rotor to the stator. Turbulent flows have been modeled by the Baldwin- Lomax turbulent model. To validate present procedure, the time averaged pressure coefficients around the rotor and stator are compared with experiment and a good agreement obtained.

• Genomics & Informatics
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• 제18권3호
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• pp.26.1-26.6
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• 2020

Single-cell RNA sequencing (scRNA-seq) has been widely applied to provide insights into the cell-by-cell expression difference in a given bulk sample. Accordingly, numerous analysis methods have been developed. As it involves simultaneous analyses of many cell and genes, efficiency of the methods is crucial. The conventional cell type annotation method is laborious and subjective. Here we propose a semi-automatic method that calculates a normalized score for each cell type based on user-supplied cell type-specific marker gene list. The method was applied to a publicly available scRNA-seq data of mouse cardiac non-myocyte cell pool. Annotating the 35 t-stochastic neighbor embedding clusters into 12 cell types was straightforward, and its accuracy was evaluated by constructing co-expression network for each cell type. Gene Ontology analysis was congruent with the annotated cell type and the corollary regulatory network analysis showed upstream transcription factors that have well supported literature evidences. The source code is available as an R script upon request.

• 한국어학
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• 제48권
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• pp.223-268
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• 2010

The purpose of this paper is to build a semantic networks of the 'cooking class' verb (based on 'CoreNet' of KAIST). This proceedings needs to adjust the concept classification. Then sub-categories of [Cooking] and [Foodstuff] hierarchy of CoreNet was adjusted for the construction of verb semantic networks. For the building a semantic networks, each meaning of 'Cooking verbs' of Korean has to be analyzed. This paper focused on the Korean 'heating' verbs and 'non-heating'verbs. Case frame structure and argument information were inserted for the describing verb information. This paper use a Propege 3.3 as a tool for building "cooking verb" semantic networks. Each verb and noun was inserted into it's class, and connected by property relation marker 'HasThemeAs', 'IsMaterialOf'.

• 비교문화연구
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• 제36권
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• pp.271-291
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• 2014

In this paper, we maintain that case makers '에e' and '에게ege', and '에서eseo' and '에게서egeseo' are not two separate morphemes but are simply allomorphs of the same morphemes respectively. When '에e' and '에게ege' are used as a dative marker, they show exactly the same semantic function and are in complementary distribution in relation to the semantic features of their preceding noun; that is, if the preceding noun is an animate noun, '에게ege' is used and '에e' is used if not. Also, '에게서egeseo' and '에서eseo' as ablative and locative case makers show exactly the same semantic function and show complementary distribution depending on whether the preceding noun is animate or non-animate. Therefore, we assume that these markers are semantically conditioned allomorphs.

• 비교문화연구
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• 제25권
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• pp.649-678
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• 2011

The purpose of this work is to explain categorial correlations between indirect evidentiality and epistemic modality on the basis of semantic, pragmatic usages of Russian so-called non-specialized lexical markers of evidentiality, such as kazhetsja, naverno, vidimo, poxozhe, dolzhno byt' etc. To do this, firstly I concentrated on the parameter of internal functional variation of a given parenthetic word. Secondly, I approached this topic from a typological perspective. Thirdly, I accepted Sweeter(1990)'s methodological assumption that etymological prototype of a given word plays a great role in grammatical, semantic, pragmatic changes. As a result, I could postulate general tendencies of grammaticalizations (or semantic, pragmatic, funtional changes) in the direction from epistemic modality to indirect evidentialty, which consists of inferentives, presumptives, and quotatives. For example, such a parenthetic word as kazhetsja can functions not only as a marker of epistemic modality of uncertainty, but also as inferentives. Besides, it is very interesting that this word lately has started to function as quotatives, too. This kind of functional variations are very characteristic in these spheres.

• 대한영상의학회지
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• 제84권2호
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• pp.332-344
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• 2023

비촉지성 유방 병변의 발견이 늘어나고 유방암에서도 유방 보존 수술이나 선행항암화학요법이 증가하면서, 유방 병변의 진단과 처치에 있어서 초음파 유도하 중재 시술은 갈수록 그 역할이 중요해지고 이용이 늘어나고 있다. 본 종설에서는 유방 초음파 유도하 중재 시술 중 가장 많이 쓰이는 조직검사와 조직 마커 삽입, 수술 전 위치결정술에 대해 종류와 시술 방법, 적응증, 장단점 등을 알아보고 실제 진료 현장에서 시행하는 데에 도움을 주고자 한다.

• Journal of Plant Biotechnology
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• 제44권4호
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• pp.438-447
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• 2017

개화는 배추종 작물의 생산성과 연관된 중요 발달 특성 중 하나이다. 이식 후, 갑작스러운 저온에 노출되어 때이른 개화를 하게 되면 수확되는 생산물의 양과 질이 떨어지게 된다. 따라서, 개화조절 메커니즘을 이해하는 것은 배추 종 작물의 농업적 생산성을 향상시키는데 도움을 줄 것이다. 춘화는 배추과 작물에서 일반적으로 알려져 있는 개화를 유도하는 중요한 요소이다. 그러나 옐로우 사순이나 코마수나와 같은 배추 아종은 춘화처리 없이도 개화한다. 1일을 주기로 하여 생물의 생리기작을 조절하는 생체시계 유전자는 일장감응형의 개화 조절에 중요한 역할을 하지만 춘화처리를 통해 개화를 유도하는 기작과도 연관되어 있다. 본 논문에서는 22개의 배추 아종을 개화에 춘화처리가 필요한 춘화형과 춘화처리 없이도 개화하는 비춘화형으로 나누어 보존된 생체시계 유전자, BrPRR1 군의 염기서열 분석을 수행하였다. 그 중 BrPRR1b 유전자의 결손 영역으로 춘화형과 비춘화형 두 그룹을 구분할 수 있었다. 이 서열변이를 증폭할 수 있는 PCR 프라이머를 디자인하여 비춘화형 배추 아종에서는 451 bp의 긴밴드를, 춘화형 배추에서는 422 bp의 작은 크기의 밴드를 증폭할 수 있었다. 이 프라이머 세트는 43개 배추 아종과 4개의 배추속 작물, 브로콜리, 양배추, 갓, 그리고 유채의 개화형을 구분하는데 적용되었다. 각 작물의 PCR 결과와 개화시기에 대한 정보를 통하여 프라이머 세트가 개화형을 판별할 수 있는 마커로 이용될 수 있음이 확인되었다. 이 마커시스템은 배추 종 작물 육종에 유묘 단계에서 개화형을 판단하는데 이용할 수 을 것이다. 또한 이 결과들은 생체시계 유전자가 배추 종 작물의 개화를 조절하는 좋은 전략이 될 수 있음을 보여주었다.