Development of a marker system to discern the flowering type in Brassica rapa crops |
Kim, Jin A
(National Academy of Agricultural Science, Rural Development Administration)
Kim, Jung Sun (National Academy of Agricultural Science, Rural Development Administration) Hong, Joon Ki (National Academy of Agricultural Science, Rural Development Administration) Lee, Yeon-Hee (National Academy of Agricultural Science, Rural Development Administration) Lee, Soo In (National Academy of Agricultural Science, Rural Development Administration) Jeong, Mi-Jeong (National Academy of Agricultural Science, Rural Development Administration) |
1 | Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, Schatz M, Nagarajan N, Acob RA, Guan P, Blas A, Wai CM, Ackerman CM, Ren Y, Liu C, Wang J, Wang J, Na JK, Shakirov EV, Haas B, Thimmapuram J, Nelson D, Wang X, Bowers JE, Gschwend AR, Delcher AL, Singh R, Suzuki JY, Tripathi S, Neupane K, Wei H, Irikura B, Paidi M, Jiang N, Zhang W, Presting G, Windsor A, Navajas-Perez R, Torres MJ, Feltus FA, Porter B, Li Y, Burroughs AM, Luo MC, Liu L, Christopher DA, Mount SM, Moore PH, Sugimura T, Jiang J, Schuler MA, Friedman V, Mitchell-Olds T, Shippen DE, dePamphilis CW, Palmer JD, Freeling M, Paterson AH, Gonsalves D, Wang L, Alam M. (2008) The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452:991-996 DOI |
2 | Mizuno T, Nakamichi N (2005) Pseudo-response regulators (PRRs) or true oscillator components (TOCs). Plant Cell Physiol. 46:677-685 DOI |
3 | Mouradov A, Cremer F, Coupland G (2002) Control of flowering time: interacting pathways as a basis for diversity. Plant Cell 14:Suppl:S111-S130 DOI |
4 | Murakami M, Ashikari M, Miura K, Yamashino T, Mizuno T (2003) The evolutionarily conserved OsPRR quintet: rice pseudoresponse regulators implicated in circadian rhythm. Plant Cell Physiol 44:1229-1236 DOI |
5 | Murakami M, Matsushika A, Ashikari M, Yamashino T, Mizuno T (2005) Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time. Biosci. Biotechnol. Biochem. 69:410-414 DOI |
6 | Osborn TC, Kole C, Parkin IAP, Sharpe AG, Kuiper M, Lydiate DJ, Trick M (1997) Comparison of flowering time genes in Brassica rapa, B. napus and Arabidopsis thaliana. Genetics 146:1123-1129 |
7 | Mun JH, Kwon SJ, Yang TJ, Seol YJ, Jin M, Kim JA, Lim MH, Kim JS, Baek S, Choi BS, Yu HJ, Kim DS, Kim N, Lim KB, Lee SI, Hahn JH, Lim YP, Bancroft I, Park BS (2009) Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication. Genome Biol 10:R111 DOI |
8 | Nakamichi N, Kita M, Niinuma K, Ito S, Yamashino T, Mizoguchi T, Mizuno T (2007) Arabidopsis clock-associated pseudo-response regulators PRR9, PRR7 and PRR5 coordinately and positively regulate flowering time through the canonical CONSTANS dependent photoperiodic pathway. Plant Cell Physiol 48:822-832 DOI |
9 | Omolade O, Müller AE, Jung C, Melzer S (2016) BvPRR7 is a cold responsive gene with a clock function in beet. Biologia Plantarum 60:95-104 DOI |
10 | Ramirez-Carvajal GA, Morse AM, Davis JM (2008) Transcript profiles of the cytokinin response regulator gene family in Populus imply diverse roles in plant development. New Phytol 177:77-89 |
11 | Ream TS, Woods DP, Amasino RM (2013) The molecular basis of vernalization in different plant groups. Cold Spring Harb Symp Quant Biol 2012. 77:105-115 |
12 | Dodd AN, Salathia N, Hall A, Kévei E, Tóth R, Nagy F, Hibberd JM, Millar AJ, Webb AA (2005) Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science 309:630-633 DOI |
13 | Alexandre CM, Hennig L (2008) FLC or not FLC: the other side of vernalization. J Exp Bot 59:1127-1135 DOI |
14 | Bieniawska Z, Espinoza C, Schlereth A, Sulpice R, Hincha DK, Hannah MA (2008) Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiol 147:263-279 DOI |
15 | Boss PK, Bastow RM, Mylne JS, Dean C (2004) Multiple pathways in the decision to flower: enabling, promoting, and resetting. Plant Cell 16 Suppl:S18-S31 DOI |
16 | Edger PP, Pires JC (2009) Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res 17:699-717 DOI |
17 | Eriksson ME, Millar AJ (2003) The circadian clock: a plant's best friend in a spinning world. Plant Physiol 132:732-738 DOI |
18 | Gomez-Campo C (1999) Developments in plant genetics and breeding, vol 4. Biology of Brassica coenospecies. Elsevier, Amsterdam Lausanne New York Oxford Shannon Singapore |
19 | Jack T (2004) Molecular and genetic mechanisms of floral control. Plant Cell 16 Suppl:S1-S17 DOI |
20 | Simpson GG, Gendall AR, Dean C (1999) When to switch to flowering. Annu Rev Cell Dev Biol 99:519-550 |
21 | Yuan YX, Wu J, Sun RF, Zhang XW, Xu DH, Bonnema G, Wang XW (2009) A naturally occurring splicing site mutation in the Brassica rapa FLC1 gene is associated with variation in flowering time. J Exp Bot 60:1299-1308 DOI |
22 | Takata N, Saito S, Saito CT, Uemura M (2010) Phylogenetic footprint of the plant clock system in angiosperms: evolutionary processes of pseudo-response regulators. BMC Evol Biol 10:126 DOI |
23 | Town CD, Cheung F, Maiti R, Crabtree J, Haas BJ, Wortman JR, Hine EE, Althoff R, Arbogast TS, Tallon LJ, Vigouroux M, Trick M, Bancroft I (2006) Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell 18:1348-1359 DOI |
24 | Yang TJ, Kim JS, Kwon SJ, Lim KB, Choi BS, Kim JA, Jin M, Park JY, Lim MH, Kim HI, Lim YP, Kang JJ, Hong JH, Kim CB, Bhak J, Bancroft I, Park BS (2006) Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Plant Cell 18:1339-1347 DOI |
25 | Harmer SL (2009) The circadian system in higher plants. Annu Rev Plant Biol 60:357-377 DOI |
26 | Millar AJ (2004) Input signals to the plant circadian clock. J Exp Bot 55:277-283 |
27 | Kim SY, Park BS, Kwon SJ, Kim J, Lim MH, Park YD, Kim DY, Suh SC, Jin YM, Ahn JH, Lee YH (2007) Delayed flowering time in Arabidopsis and Brassica rapa by the overexpression of FLOWERING LOCUS C (FLC) homologs isolated from Chinese cabbage (Brassica rapa L. ssp. pekinensis). Plant Cell Rep 26:327-336 DOI |
28 | Kim JA, Yang TJ, Kim JS, Park JY, Kwon SJ, Lim MH, Jin M, Lee SC, Lee SI, Choi BS, Um SH, Kim HI, Chun C, Park BS (2007) Isolation of circadian-associated genes in Brassica rapa by comparative genomics with Arabidopsis thaliana. Mol Cells 23:145-153 |
29 | Kim JK, Ahn DC, Oh HJ, Kim KH, Choi YM, Oh SY, Kang NJ, Jeong BR, Kim ZH, Park YH (2010) Skewed Inheritance of EST-SSR Alleles in Reciprocal Crosses of Cut Roses. Kor. J. Hort. Sci. Technol. 28:618-626 |
30 | Kim JS, Chung TY, King GJ, Jin M, Yang TJ, Jin YM, Kim HI, Park BS (2006) A sequence-tagged linkage map of Brassica rapa. Genetics 174:29-39 DOI |
31 | Koo BH, Yoo SC, Park JW, Kwon CT, Lee BD, An G, Zhang Z, Li J, Li Z, Paek NC (2013) Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes. Mol Plant 6:1877-1888 DOI |
32 | Lou P, Wu J, Cheng F, Cressman LG, Wang X, McClung CR (2012) Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa. Plant Cell 24:2415-2426 DOI |
33 | McClung CR (2010) A modern circadian clock in the common angiosperm ancestor of monocots and eudicots. BMC Biol 8:55 DOI |
34 | Lou P, Xie Q, Xu X, Edwards CE, Brock MT, Weinig C, McClung CR (2011) Genetic architecture of the circadian clock and flowering time in Brassica rapa. Theor Appl Genet 123:397-409 DOI |
35 | Lysak MA, Koch MA, Pecinka A, Schubert I (2005) Chromosome triplication found across the tribe Brassicaceae. Genome Res 15:516-525 DOI |
36 | Kim JA, Kim JS, Hong JK, Lee YH, Choi BS, Seol YJ, Jeon CH (2012) Comparative mapping, genomic structure, and expression analysis of eight pseudo-response regulator genes in Brassica rapa. Mol Genet Genomics 287:373-388 DOI |
37 | Makino S, Kiba T, Imamura A, Hanaki N, Nakamura A, Hanaki N, Nakamura A, Suzuki T, Taniguchi M, Ueguchi C, Sugiyama T, Mizuno T. (2000) Genes encoding pseudo-response regulators: insight into His-to-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana. Plant Cell Physiol. 41:791-803 DOI |
38 | Matsushika A, Makino S, Kojima M, Mizuno T (2000) Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock. Plant Cell Physiol. 41:1002-1012 DOI |
39 | Michae TP, Salome PA, McClung CR (2003) Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity. Proc Natl Acad Sci U S A 100:6878-6883 DOI |