• Molecules and Cells
• /
• v.24 no.2
• /
• pp.185-193
• /
• 2007

Symbiotic nitrogen fixation with nitrogen-fixing bacteria in the root nodules is a distinctly beneficial metabolic process in legume plants. Legumes control the nodule number and nodulation zone through a systemic negative regulatory system between shoot and root. Mutation in the soybean NTS gene encoding GmNARK, a CLAVATA1-like serine/threonine receptor-like kinase, causes excessive nodule development called hypernodulation. To examine the effect of nts mutation on the gene expression profile in the leaves, suppression subtractive hybridization was performed with the trifoliate leaves of nts mutant 'SS2-2' and the wild-type (WT) parent 'Sinpaldalkong2', and 75 EST clones that were highly expressed in the leaves of the SS2-2 mutant were identified. Interestingly, the expression of jasmonate (JA)-responsive genes such as vspA, vspB, and Lox2 were upregulated, whereas that of a salicylate-responsive gene PR1a was suppressed in the SS2-2 mutant. In addition, the level of JA was about two-fold higher in the leaves of the SS2-2 mutant than in those of the WT under natural growth conditions. Moreover, the JA-responsive gene expression persists in the leaves of SS2-2 mutant without rhizobia infection in the roots. Taken together, our results suggest that the nts mutation increases JA synthesis in mature leaves and consequently leads to constitutive expression of JA-responsive genes which is irrelevant to hypernodulation in the root.

• Journal of Plant Biology
• /
• v.36 no.2
• /
• pp.177-182
• /
• 1993

The root nodules of Elaeagnus umbellata were coralloid-shape due to repeated dichotomous branching of nodule meristem. The filamentous endophyte with vesicle cluster ranging from 30 ${\mu}{\textrm}{m}$ to 60 ${\mu}{\textrm}{m}$ in diameter was present only in the cortical cells. The isolated endophytes in vitro culture showed typical Frankia morphology, consisting of highly branched hyphae ranging from 0.8 ${\mu}{\textrm}{m}$ to 1.0 ${\mu}{\textrm}{m}$ in diameter, terminal and intrahyphal sporangia varing in shape and size up to 60 ${\mu}{\textrm}{m}$ in length and laminated vesicles. Its infectivity and effectivity were confirmed by induction of nitrogen-fixing root nodules on the inoculated seedlings of two Elaeagnus species. Consequently, the isolate was confirmed as a true symbiont of Elaeagnus umbellata root nodule and named Frankia EuIK1.

• Korean Journal of Soil Science and Fertilizer
• /
• v.20 no.3
• /
• pp.269-274
• /
• 1987

A laboratory experiment was conducted to find out the effect of inoculation with plant growth of associative $N_2$-fixing bacteria on the combination of eight different rice seedling with seven different associative $N_2$-fixing bacteria in which were isolated and identified from grasses and rice in saline and reclaimed saline paddy soil. Those were examined in N-free axenic culture medium. The result of this experiment exemplified the contribution of associative $N_2$-fixing bacteria to their host plant were varied much by the combination of rice cultivars and bacterial strains. Acetylene reduction ($N_2$-fixation) activity seems to be more variable with respect to the combination of rice cultivars and bacterial strains. The relationship between acetylene reduction activity and rice performance such as dry matter weight, plant height, root length, and number of root were statistically insignificant. However, in comparision with the control, the dry matter yield of Annapuruna was increased by inoculation of all the seven bacteria strains. Among the seven rice cultivars, the average acetylene reducing activity was the highest in Annapuruna, and Shingwang, and the lowest in IR-8 inoculated with Pseudomonas sp H8. Among the seven bacterial strains the highest acetylene reducing activity was obtained by the combination of Shingwang with Pseudomonas sp H8.

• KOREAN JOURNAL OF CROP SCIENCE
• /
• v.43 no.1
• /
• pp.23-27
• /
• 1998

Inhibition of nodule formation and nitrogen fixation by soil nitrogen, primarily nitrate, is well known in legume plants. The present study was undertaken to evaluate the effect of ${NO_3}^-$ on the nodulation, nitrogenase activity, and growth of supernodulating soybean mutant and its wild type. A greenhouse study was conducted to compare two of supernodulating mutants, 'SS2-2' and 'nts 382', with the normal nodulating cultivar 'Sinpaldalkong 2' when grown in a 1-l styroform cup filled with sand, and fertilized with five levels of ${NO_3}^-$ (0, 2, 4, 8, and 12 mM). During the growth period, each plant was supplied two or three times a week with 50 mL of nutrient solution. Supernodulating soybean mutants, SS2-2 and nts 382, showed more nodules and nodule mass, and greater $C_2\;H_2$ activity than the wild type, Sinpaldalkong 2, regardless of the level of exogeneous nitrogen supply. On the other hand, total dry weight of SS2-2 mutant, which was smaller than Sinpaldalkong 2, did not respond to the various ${NO_3}^-$-N levels. This suggested that supernodulating SS2-2 mutant could maintain fairly high total dry weight at the low ${NO_3}^-$-N level, even in the absence of exogeneous ${NO_3}^-$-N in the nutrient solution. From the reduced top growth and high nitrogen fixing ability of supernodulating mutants, it was surmised that supernodulating mutant could potentially protect agricultural environments from pollution through the reduction in nitrogen fertilization as well as maintain fairly high yield with increasing planting density.

• Journal of the Korea Organic Resources Recycling Association
• /
• v.12 no.1
• /
• pp.67-74
• /
• 2004

A bacterium which grow on phenol as an only carbon and energy source was isolated from the sewage sludge at Nangi municipal wastewater treatment plant in Seoul. This bacterium was found to be a Gram negative rod with high motility, and well grew on 0.05%, 0.1%, and 0.15% of phenol. No matching strain was found from the result of the BBL test. Phylogenetic analysis of the strain by comparison of the 16s-rDNA has revealed that this bacterium has 99% of similarity with Stenotrophomonas maltophilia strain of Xanthomonas group, which belongs t the Gamma (${\gamma}$) subdivision of Proteobacteria. This strain has also shown 98% of similarity with nitrogen fixing bacterium MAGDE3 and Pseudomonas cissicola strain, and 97% of similarity with Stenotrophomonas sp. LMG198 and Xanthomonas cucurbitae.

• Journal of Microbiology and Biotechnology
• /
• v.30 no.8
• /
• pp.1169-1179
• /
• 2020

In this study, two soybean genotypes, i.e., aluminum-tolerant Baxi 10 (BX10) and aluminumsensitive Bendi 2 (BD2), were used as plant materials and acidic red soil was used as growth medium. The soil layers from the inside to the outside of the root are: rhizospheric soil after washing (WRH), rhizospheric soil after brushing (BRH) and rhizospheric soil at two sides (SRH), respectively. The rhizosphere bacterial communities were analyzed by high-throughput sequencing of V4 hypervariable regions of 16S rRNA gene amplicons via Illumina MiSeq. The results of alpha diversity analysis showed that the BRH and SRH of BX10 were significantly lower in community richness than that of BD2, while the WRH exhibited no significant difference between BX10 and BD2. Among the three sampling compartments of the same soybean genotype, WRH had the lowest community richness and diversity while showing the highest coverage. Beta diversity analysis results displayed no significant difference for any compartment between the two genotypes, or among the three different sampling compartments for any same soybean genotype. However, the relative abundance of major bacterial taxa, specifically nitrogen-fixing and/or aluminum-tolerant bacteria, was significantly different in the compartments of the BRH and/or SRH at phylum and genus levels, indicating genotype-dependent variations in rhizosphere bacterial communities. Strikingly, as compared with BRH and SRH, the WRH within the same genotype (BX10 or BD2) always had an enrichment effect on rhizosphere bacteria associated with nitrogen fixation.

• Applied Biological Chemistry
• /
• v.27
• /
• pp.56-67
• /
• 1984

As in many other country, the use of organic matter in Korea has long history. Farmers understand the value of organic matter as the source of plant nutrient and soil improving agent in general. Since 50 years ago, the sources of organic matter in paddy soils were compost, rice and barly straw, green manure, animal waste, fish and beancake, etc.. Application of green manures such as vetch and chinese milk vetch showed no significant effect on the yield of brown rice in paddy soil. On the other hand, the effects of compost and rice straw showed more significant on the yield of brown rice in paddy soil. Application of rice straw in rice cultivation is commonly made at different times between harvest, early spring and several weeks before transplanting. Considering the suitable paddy soil for application of rice straw under well to moderately well drained soil, the yield was pronounced more than poorly drained soil. Based on laboratory and field experimants, application of rice straw promoted the decrease of oxidation-reduction potential in well to moderately well drained soil. This results to be enhanced the release of some mineral nutrients,. such as potassium, calcium, silicon, and increase of availability of soil phosphorus. In the field experiments, results obtained from nitrogen fraction on the immobilization-mineralization of the tracer nitrogen applied in paddy soil,the amount and index of organic nitrogen incoporated in soil was more pronounced in rice straw application than control. Rice straw and its transformation products incoporated in the soil, provided the inflow of energy necessary to maintain heterotrophic microbes activities. Rice straw and its transformation products, especially soluble carbohydrate, enhanced the population of free-living heterotrophic $N_2$ - fixing microbes. Moreover, rice straw and its transformation products in paddy soil, enhanced the activities of soil enzymes such as dehydrogenase and urease.

• The Plant Pathology Journal
• /
• v.17 no.2
• /
• pp.67-70
• /
• 2001

Medicago truncatula is a diploid legume plant related to the forage crop alfalfa. Recently, it has been chosen as a model species for genomic studies due to its small genome, self-fertility, short generation time, and high transformation efficiency. M. truncatula engages in symbiosis with nitrogen-fixing soil bacterium Rhizobium meliloti. M. truncatula mutants that are defective in nodulation and developmental processes have been generated. Some of these mutants exhibited altered phenotypes in symbiotic responses such as root hair deformation, expression of nodulin genes, and calcium spiking. Thus, the genes controlling these traits are likely to encode functions that are required for Nod-factor signal transduction pathways. To facilitate genome analysis and map-based cloning of symbiotic genes, a bacterial artificial chromosome library was constructed. An efficient polymerase chain reaction-based screening of the library was devised to fasten physical mapping of specific genomic regions. As a genomics approach, comparative mapping revealed high levels of macro- and microsynteny between M. truncatula and other legume genomes. Expressed sequence tags and microarray profiles reflecting the genetic and biochemical events associated with the development and environmental interactions of M. truncatula are assembled in the databases. Together, these genomics programs will help enrich our understanding of the legume biology.

• Korean Journal of Soil Science and Fertilizer
• /
• v.21 no.1
• /
• pp.55-60
• /
• 1988

To develop soybean inoculant the effects of inoculation with selected Rhizobium japonicum strains were tested in the field, and the results were as following. 1. With the inoculation of selected strains, increase of nodule number, nodule weight and nitrogen fixing activity were observed with or without applying N-fertilizer. 2. Chlorophyll contents was increased and senescence of plant was delayed with the inoculation of selected strains in case without applying N-fertilizer. But there was little difference of chlorophyll contents in case with applying N-fertilizer. 3. There were little differences of plant height and number of nodes, and some increase of plant stem dry matter and number of pods with inoculation of selected strains. 4. The mean yield of inoculation group (363-374kg/10a) was increased by 8-11% comparing to the uninoculated group (337kg/10a) in case without applyiag N-fertilizer. The mean yield of inoculated group (368-384kg/10a) was increased by 9-14% also in case with applying N-fertilizer.

• Microbiology and Biotechnology Letters
• /
• v.14 no.2
• /
• pp.187-192
• /
• 1986

The inoculation effect of the highly nitrogen fixing strains of R. japonicum were tested in the 3 kinds of soil with different cultural history onto Gycine max cv. Jang-yeob. The nodulation and nitrogen fixation activity in 3 test soils all showed the great increase in inoculated group compared to the non-inoculated group. The plant dry weight of the in-oculated groups were increased about 10% than that of the non-inoculated groups. The numerical index of the increase in total nitrogen fixation activity were 238% in the pre-cultivated, 266% in the immatured and 157% in the matured soil and these results suggested the clear effect of inoculation. Among the strains tested, R. japonicum R214 and Rl38 showed the excellent inoculation effect.