• 제목/요약/키워드: new protein source

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Genomic and Proteomic Analysis of Microbial Function in the Gastrointestinal Tract of Ruminants - Review -

  • White, Bryan A.;Morrison, Mark
    • Asian-Australasian Journal of Animal Sciences
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    • 제14권6호
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    • pp.880-884
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    • 2001
  • Rumen microbiology research has undergone several evolutionary steps: the isolation and nutritional characterization of readily cultivated microbes; followed by the cloning and sequence analysis of individual genes relevant to key digestive processes; through to the use of small subunit ribosomal RNA (SSU rRNA) sequences for a cultivation-independent examination of microbial diversity. Our knowledge of rumen microbiology has expanded as a result, but the translation of this information into productive alterations of ruminal function has been rather limited. For instance, the cloning and characterization of cellulase genes in Escherichia coli has yielded some valuable information about this complex enzyme system in ruminal bacteria. SSU rRNA analyses have also confirmed that a considerable amount of the microbial diversity in the rumen is not represented in existing culture collections. However, we still have little idea of whether the key, and potentially rate-limiting, gene products and (or) microbial interactions have been identified. Technologies allowing high throughput nucleotide and protein sequence analysis have led to the emergence of two new fields of investigation, genomics and proteomics. Both disciplines can be further subdivided into functional and comparative lines of investigation. The massive accumulation of microbial DNA and protein sequence data, including complete genome sequences, is revolutionizing the way we examine microbial physiology and diversity. We describe here some examples of our use of genomics- and proteomics-based methods, to analyze the cellulase system of Ruminococcus flavefaciens FD-1 and explore the genome of Ruminococcus albus 8. At Illinois, we are using bacterial artificial chromosome (BAC) vectors to create libraries containing large (>75 kbases), contiguous segments of DNA from R. flavefaciens FD-1. Considering that every bacterium is not a candidate for whole genome sequencing, BAC libraries offer an attractive, alternative method to perform physical and functional analyses of a bacterium's genome. Our first plan is to use these BAC clones to determine whether or not cellulases and accessory genes in R. flavefaciens exist in clusters of orthologous genes (COGs). Proteomics is also being used to complement the BAC library/DNA sequencing approach. Proteins differentially expressed in response to carbon source are being identified by 2-D SDS-PAGE, followed by in-gel-digests and peptide mass mapping by MALDI-TOF Mass Spectrometry, as well as peptide sequencing by Edman degradation. At Ohio State, we have used a combination of functional proteomics, mutational analysis and differential display RT-PCR to obtain evidence suggesting that in addition to a cellulosome-like mechanism, R. albus 8 possesses other mechanisms for adhesion to plant surfaces. Genome walking on either side of these differentially expressed transcripts has also resulted in two interesting observations: i) a relatively large number of genes with no matches in the current databases and; ii) the identification of genes with a high level of sequence identity to those identified, until now, in the archaebacteria. Genomics and proteomics will also accelerate our understanding of microbial interactions, and allow a greater degree of in situ analyses in the future. The challenge is to utilize genomics and proteomics to improve our fundamental understanding of microbial physiology, diversity and ecology, and overcome constraints to ruminal function.

WHO 내용일일섭취량을 고려한 우리나라 영유아 어린이의 식품을 통한 멜라민 노출 및 위해 평가 (Exposure and Risk Assessment of Melamine in Representative Korean Foods for Infants and Children)

  • 오창환
    • Journal of Dairy Science and Biotechnology
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    • 제27권1호
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    • pp.1-12
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    • 2009
  • In 2008, baby formula containing melamine was found to be responsible for a large outbreak of renal failure in infants in China. A total of 294,000 infants were hospitalized, and at least 6 babies died due to ingestion of the tainted formula. Melamine contains high levels of nitrogen (>60%), which is used as an indicator of protein content. Therefore, high levels of melamine in infant formula were thought to be the result of deliberate contamination m an attempt to increase its apparent protein content. Following inspections by China's national inspection agency, assorted products from at least 22 dairy manufacturers across China were found to have varied levels of melamine (range: 0.096196.61 mg/kg). Melamine co-exposure with cyanuric acid can induce acute melamine-cyanurate crystal nephropathy, which can lead to renal failure at much lower doses than if either compound were ingested alone. However, currently, there are very few data on melamine analogues other than cyanuric acid. At an expert meeting of the WHO and FAO held to review toxicological aspects of melamine and cyanuric acid on December 14, 2008, a new tolerable daily intake (TDI) of melamine was established that could be applied to the entire population, including infants. Therefore, a risk assessment of the various theoretical melamine contamination levels in infant formula and selected representative foods (other than infant formula and sole-source nutrition products) is urgently needed for Korean babies and children up to 7 years of age. Although the undetectable level regulation for infant formula may be low enough to guarantee the safety of babies under the age of 1 year (including premature babies), the melamine standard of 2.5 ppm for foods other than baby formula could be insufficient to protect the 95th percentile population aged 1~2 years because of this demographic's high consumption of milk, yogurt, and soy milk (hazard index = 1.79). Because TDIs are chronic values intended to protect an individual over his/her lifetime, occasional modest ingestion in excess of the TDI is not likely to be a health concern. However, children aged 1~2 years may have renal systems that are comparatively more sensitive to the crystallization of melamine and its analogues. Therefore, governmental jurisdictions may need to practice more prudent management of food items that could raise the melamine exposure for this population.

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활성산소에 의해 유도된 흰쥐 뇌조직의 지질산화에 대한 식물체 추출물의 효과 (Effect of Plants Extracts on Lipid Peroxidation of Rat Brain Tissue Induced by Reactive Oxygen Species)

  • 김석중;한대석
    • 한국식품과학회지
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    • 제37권6호
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    • pp.976-982
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    • 2005
  • Sprague-Dawley 계열의 흰쥐를 perfusion시킨 후 분리한 뇌조직을 이용하여 뇌의 산화적 손상을 억제할 수 있는 식물체 및 항산화제의 활성을 조사하였다. 뇌의 산화적 손상 유도를 위해서는 활성산소원으로 $2.5{\mu}M$ ferrous sulfate와 7.5mM hydrogen peroxide를 뇌조직 homogenate에 첨가하였으며 손상의 정도는 malondialdehyde와 4-hydroxyalkenal 총 함량으로 표현되는 지질 과산화도(LPO)를 이용하였다. $37^{\circ}C$에서 10분간의 처리 시 LPO는 4.1에서 6.9nmol/mg protein 증가하였다. 한편, 식물체들의 뇌 손상 억제 효과를 분석하기 위해, 68종의 식용식물체로부터 수용성 추출물을 조제한 후 이를 활성산소 처리 전에 뇌 조직 homogenate에 첨가함으로써 지질산화 억제 정도를 비교하였다. 그 결과 엽채류에서는 아욱, 열무잎, 비름, 무순, 셀러리 등이, 근채류에서는 조림감자, 생강, 고구마 등이 80% 이상의 LPO억제 효과를 나타냈다. 과채류와 과일에서는 풋고추, 꽈리고추, 쥬니키, 가지, 아보카도, 오렌지, 바나나 등이 60% 이상의 효과를 보였으며, 버섯류에서는 팽이버섯, 양송이버섯, 표고버섯, 새송이버섯, 느타리버섯 순으로 효과가 높게 나타났다. 한편, 32종의 항산화제 중에서는 (+)catechin(91%), (-)epigallocatechin gallate(85%), (-)epicatechin gallate(83%), kaempferol(83%), chlorogenic acid(78%), melatonin(75%), ${\alpha}-tocopherol(69%)$ 등이 산화적 뇌 손상 방어에 우수한 것으로 나타났다.

한국 성인의 해조류 섭취와 다유전자 위험 점수 간의 상호작용이 염증에 미치는 영향 (Effects of the interaction between seaweed consumption and the polygenic risk score on inflammation in Korean adults)

  • 홍가연;신다연
    • Journal of Nutrition and Health
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    • 제57권2호
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    • pp.211-227
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    • 2024
  • 본 연구에서는 해조류 섭취와 염증과 관련된 유전자의 변이 및 다유전자 위험 점수 간의 상호작용이 염증에 미치는 영향을 확인하였다. 남성과 여성 모두 PRS가 높은 그룹에서 염증 발생 위험은 증가하였다. 본 연구에서는 해조류의 섭취가 염증과 직접적인 관련이 있는 것으로 밝혀지지 않았지만, 해조류 섭취와 다유전자 위험 점수 변이 사이에선 통계적으로 유의한 결과를 보였다. 특히, 낮은 해조류의 섭취는 높은 다유전자 위험 점수를 가진 여성에서 고염증 발생 위험이 높았다. 따라서 본 연구결과는 한국인에게서 작용하는 염증 및 염증질환에 대한 유전자 소인을 파악할 수 있고 면역 체계의 균형 및 건강 유지에 새로운 중재방안을 제시할 수 있음을 기대한다.

Effect of Non-starch Polysaccharides and Resistant Starch on Mucin Secretion and Endogenous Amino Acid Losses in Pigs

  • Morel, Patrick C.H.;Melai, J.;Eady, S.L.;Coles, G.D.
    • Asian-Australasian Journal of Animal Sciences
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    • 제18권11호
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    • pp.1634-1641
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    • 2005
  • Generally, dietary fibre (DF) includes lignin, non-starch polysaccharides (NSP) and resistant starch (RS). In monogastric species, low levels of dietary fibre in the diet are associated with various diseases and high levels reduce nutrient digestibilities. In this study, the effects of different types and levels of NSP (soluble: $\beta$-glucan, insoluble cellulose) and resistant starch on mucin secretion and endogenous nitrogen and amino acid losses in pigs were investigated. A total of 25 five-week-old weaner pigs (9.5 kg${\pm}$1.5 kg), were randomly allocated to each of five experimental diets. Different levels of purified barley $\beta$-glucan (BG) extract (5 or 10% of $Glucagel^{(R)}$ $\beta$-glucan, providing 4 or 8% of BG in the diet), and resistant starch (RS) (8.3 or 16.6% of Hi-$Maize^{TM}$, providing 5 or 10% RS in the diet) were substituted for wheat starch in a purified diet in which enzymatically-hydrolysed casein was the sole source of protein. The diets were fed for 21 days. No statistically significant difference between treatments (p>0.05) was observed for growth performance and organs weights. No difference in ileal starch digestibility was observed between pigs on the cellulose or $\beta$-glucan diets. However, as the level of resistant starch in the diet increased the ileal starch digestibility decreased (p<0.05). The inclusion of resistant starch in the diet (5 or 10%) did not increase mucin production when compared with the cellulose-only diet. However, as the level of beta-glucan in the diet increased, both crude mucin in the digesta dry matter and per kg dry matter intake increased (p<0.05). Pigs fed the diet containing 8% of beta-glucan had higher endogenous loss flow than those fed the diets including 5 or 10% of resistant starch or 4% of $\beta$-glucan. In conclusion, dietary inclusion of resistant starch increased the level of starch reaching the large intestine without any effect on mucin secretion, or endogenous nitrogen or amino acid losses content in the small intestine. The addition of $\beta$-glucan to a diet containing cellulose increases both mucin secretion and endogenous amino acid and nitrogen losses in the small intestine.

Detection and Molecular Characterization of Cryptosporidium spp. from Wild Rodents and Insectivores in South Korea

  • Song, Juha;Kim, C-Yoon;Chang, Seo-Na;Abdelkader, Tamer Said;Han, Juhee;Kim, Tae-Hyun;Oh, Hanseul;Lee, Ji Min;Kim, Dong-Su;Kim, Jong-Taek;Oh, Hong-Shik;Hur, Moonsuk;Suh, Jae-Hwa;Park, Jae-Hak
    • Parasites, Hosts and Diseases
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    • 제53권6호
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    • pp.737-743
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    • 2015
  • In order to examine the prevalence of Cryptosporidium infection in wild rodents and insectivores of South Korea and to assess their potential role as a source of human cryptosporidiosis, a total of 199 wild rodents and insectivore specimens were collected from 10 regions of South Korea and screened for Cryptosporidium infection over a period of 2 years (2012-2013). A nested-PCR amplification of Cryptosporidium oocyst wall protein (COWP) gene fragment revealed an overall prevalence of 34.2% (68/199). The sequence analysis of 18S rRNA gene locus of Cryptosporidium was performed from the fecal and cecum samples that tested positive by COWP amplification PCR. As a result, we identified 4 species/genotypes; chipmunk genotype I, cervine genotype I, C. muris, and a new genotype which is closely related to the bear genotype. The new genotype isolated from 12 Apodemus agrarius and 2 Apodemus chejuensis was not previously identified as known species or genotype, and therefore, it is supposed to be a novel genotype. In addition, the host spectrum of Cryptosporidium was extended to A. agrarius and Crosidura lasiura, which had not been reported before. In this study, we found that the Korean wild rodents and insectivores were infected with various Cryptosporidium spp. with large intra-genotypic variationa, indicating that they may function as potential reservoirs transmitting zoonotic Cryptosporidium to livestock and humans.

큐어링 후 저장에 따른 고구마 저장뿌리 단백질체의 비교분석 (Comparative proteome profiling in the storage root of sweet potato during curing-mediated wound healing)

  • 신호용;지창윤;김호수;정정성;최성환;곽상수;김윤희;이증주
    • Journal of Plant Biotechnology
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    • 제50권
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    • pp.1-10
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    • 2023
  • 고구마(Ipomoea batatas L. Lam)는 영양소, 가공 식품, 동물 사료 및 색소 재료의 유용한 공급원으로 이용 가능한 경제적으로 중요한 대표적인 뿌리 작물이다. 일반적으로 고구마의 저장 뿌리는 수확 후 저장 기간 동안 다양한 미생물과 질병에 의한 부패에 노출되기 쉽다. 수확 후 큐어링은 저장기간 동안 상처를 치유하고 미생물에 의한 부패를 방지하기 위한 가장 적합한 수단으로 알려져 있다. 본 연구에서는 큐어링과 연관된 분자적 기작에 관여하는 단백질들을 확인하기 위해, 큐어링 처리 후 저장기간 동안 단백질체의 변화를 분석하였다. 33℃ (큐어링) 및 15℃ (대조군)에서 3일 동안 처리하고 8주의 저장 기간이 지난 후 2D 전기영동 분석을 통해 단백질 spot의 변화를 확인한 결과, 31개 단백질 spot의 발현량이 차이 나는 것을 확인하였으며, 이들 중 15개의 단백질 spot을 동정하여 그 특성을 분석하였다. 동정된 단백질 중 alphaamylase (spot 1)는 큐어링 처리구에서만 발현량이 증가하였으며, probable aldo-keto reductase 2-like (spot 3) 및 hypothetical protein CHGG_01724 (spot 4)는 큐어링 및 대조구에서 동시에 발현량이 증가하였으나, sporamin A (spot 10)는 큐어링 및 대조구에서 발현량이 감소하였다. 한편, 대조구에서 enolase (spot 14)는 발현량이 증가하였으나, chain A of actinidin-E-64 complex+ (spot 19), ascorbate peroxidase (spot 22) 및 여러 sporamin 단백질들(spot 20, 21, 23, 24, 27, 29, 30 및 31)은 발현량이 감소하였다. 본 연구의 결과는 고구마 저장 뿌리에서 큐어링 처리와 관련된 단백질의 동정 및 수확 후 저장 기간동안 병 저항성과 관련된 기작에 대한 이해를 높이며, 향후 저온 저장 능력이 향상된 신품종 개발을 위한 후보 유전자의 도출에도 기여할 수 있을 것이다.

An International Collaborative Program To Discover New Drugs from Tropical Biodiversity of Vietnam and Laos

  • Soejarto, Djaja D.;Pezzuto, John M.;Fong, Harry H.S.;Tan, Ghee Teng;Zhang, Hong Jie;Tamez, Pamela;Aydogmus, Zeynep;Chien, Nguyen Quyet;Franzblau, Scott G.;Gyllenhaal, Charlotte;Regalado, Jacinto C.;Hung, Nguyen Van;Hoang, Vu Dinh;Hiep, Nguyen Tien;Xuan, Le Thi;Hai, Nong Van;Cuong, Nguyen Manh;Bich, Truong Quang;Loc, Phan Ke;Vu, Bui Minh;Southavong, Boun Hoong
    • Natural Product Sciences
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    • 제8권1호
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    • pp.1-15
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    • 2002
  • An International Cooperative Biodiversity Group (ICBG) program based at the University of Illinois at Chicago initiated its activities in 1998, with the following specific objectives: (a) inventory and conservation of of plants of Cuc Phuong National Park in Vietnam and of medicinal plants of Laos; (b) drug discovery (and development) based on plants of Vietnam and Laos; and (c) economic development of communities participating in the ICBG project both in Vietnam and Laos. Member-institutions and an industrial partner of this ICBG are bound by a Memorandum of Agreement that recognizes property and intellectual property rights, prior informed consent for access to genetic resources and to indigenous knowledge, the sharing of benefits that may arise from the drug discovery effort, and the provision of short-term and long-term benefits to host country institutions and communities. The drug discovery effort is targeted to the search for agents for therapies against malaria (antimalarial assay of plant extracts, using Plasmodium falciparum clones), AIDS (anti-HIV-l activity using HOG.R5 reporter cell line (through transactivation of the green fluorescent protein/GFP gene), cancer (screening of plant extracts in 6 human tumor cell lines - KB, Col-2, LU-l, LNCaP, HUVEC, hTert-RPEl), tuberculosis (screening of extracts in the microplate Alamar Blue assay against Mycobacterium tuberculosis $H_{37}Ra\;and\;H_{37}Rv),$ all performed at UIC, and CNS-related diseases (with special focus on Alzheimer's disease, pain and rheumatoid arthritis, and asthma), peformed at Glaxo Smith Kline (UK). Source plants were selected based on two approaches: biodiversity-based (plants of Cuc Phuong National Park) and ethnobotany-based (medicinal plants of Cuc Phuong National Park in Vietnam and medicinal plants of Laos). At mc, as of July, 2001, active leads had been identified in the anti-HIV, anticancer, antimalarial, and anti- TB assay, after the screening of more than 800 extracts. At least 25 biologically active compounds have been isolated, 13 of which are new with anti-HIV activity, and 3 also new with antimalarial activity. At GSK of 21 plant samples with a history of use to treat CNS-related diseases tested to date, a number showed activity against one or more of the CNS assay targets used, but no new compounds have been isolated. The results of the drug discovery effort to date indicate that tropical plant diversity of Vietnam and Laos unquestionably harbors biologically active chemical entities, which, through further research, may eventually yield candidates for drug development. Although the substantial monetary benefit of the drug discovery process (royalties) is a long way off, the UIC ICBG program provides direct and real-term benefits to host country institutions and communities.

닭발껍질추출 Gelatin을 이용한 Salad 드레싱의 이화학적 및 관능적 특성 (Physicochemical and Sensory Characteristics of Salad Dressing using Gelatin Extracted from Chicken Foot Skin)

  • 신미혜;남상명
    • 한국조리학회지
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    • 제9권4호
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    • pp.123-135
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    • 2003
  • 본 연구는 도살한 후 식용 부위를 제거하고 폐기되는 닭발을 이용하고자 닭발껍질에서 식품 소재인 gelatin을 추출하였다. 샐러드 드레싱의 물성 및 기호성 증진을 위해 닭발껍질에서 추출한 gelatin을 첨가하여 가공적성실험을 하였다. 결과는 다음과 같다. \circled1Gelatin - 한천용액으로 제조한 드레싱의 관능평가 결과에서 gelatin용액에 대한 조림간장의 함량이 10%인 것이 관능적으로 우수한 결과를 나타냈다. 겨자 마요네즈 드레싱은 마요네즈 함량이 낮을수록(10% 이하) 선호도가 좋아 마요네즈 첨가량이 적은 것이 바람직한 것으로 판단되었다. 참깨 드레싱은 gelatin 용액에 대한 참깨의 함량이 15%일 때 기호도가 높은 것으로 나타났다. \circled245$^{\circ}C$에서 전단속도에 따른 전단 응력을 관찰한 결과, 간장 드레싱의 점도는 조림간장의 첨가량이 증가할수록 처리구간 유의적인 감소를 나타냈고, 겨자 마요네즈 드레싱의 경우는 마요네즈 첨가량이 증가할수록 점도도 증가하는 것으로 나타났다. 참깨 드레싱도 역시 첨가량이 증가할수록 점도의 증가를 나타냈다. \circled3Gelatin의 첨가량을 달리하여 제조한 드레싱의 점도는 gelatin의 첨가량이 증가할수록 모든 시험구에서 유의적인 증가를 나타냈다. 마요네즈드레싱과 참깨 드레싱에서 gelatin첨가에 의한 혼탁도의 감소가 관찰되었다. 색도 측정 결과 gelatin첨가량에 따른 모든 처리구에서 유의적인 차이를 나타내지 않았다. \circled4Gelatin의 함량을 달리한 드레싱의 관능평가 결과, 전반적인 기호도는 gelatin-한천 용액은 2%의 gelatin과 0.5%의 한천을 함유한 것이 가장 우수한 것으로 나타났다.(Table 5). 이상의 결과들을 종합해 볼 때 닭발껍질로부터 추출한gelatin의 첨가는 물성학적, 관능적으로 더 우수한 것으로 나타나 새로운 소재로서 닭발껍질의 이용 가능성이 매우 크다고 판단된다. 또한gelatin을 이용한 드레싱의 개발은 한층 더 산업화의 일조를 할 수 있을 것으로 기대가 된다.

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솔장다리 추출물의 항비만 효과 (Anti-obesity Effect of Salsola collina Ethanol Extract)

  • 진경숙;이수현;권현주;김병우
    • 생명과학회지
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    • 제27권8호
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    • pp.888-895
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    • 2017
  • 솔장다리(S. collina)는 건조한 대지에 널리 분포되어 있는 한해살이 식물로 한방에서는 고혈압의 치료에 사용되어왔으며 선행연구를 통해 솔장다리가 보유한 항산화 및 항암 활성을 밝힌바 있다. 본 연구에서는 솔장다리 에탄올 추출물(SCEE)의 항비만 활성을 췌장 lipase 효소 활성 억제능과 세포실험계를 이용하여 분석하였다. 그 결과 SCEE는 농도 의존적으로 lipase 효소 활성을 유의적으로 억제시켰으며, 3T3-L1 preadipocyte를 이용하여 지방세포 분화 및 지방생성, 생성된 지방의 분해에 미치는 영향을 분석한 결과 지방세포 분화, 세포 내 지방 축적, TG 함량 등을 독성 없이 농도의존적으로 억제하였고, 지방세포 내 중성지방을 유의적으로 분해시키는 것으로 나타났다. 이러한 솔장다리의 지방세포 분화 억제능은 핵심 작용 인자인 $C/EBP{\alpha}$, $C/EBP{\beta}$, 그리고 $PPAR{\gamma}$의 유전자 및 단백질 발현조절에서 기인함을 확인하였다. 이러한 결과는 솔장다리가 보유한 췌장 lipase 활성 저해능, 지방세포 분화 억제능, 지방세포 내 지방 분해능, 지방분화관련 인자 신호전달기전 조절을 통한 항비만 활성을 처음으로 밝혀낸 것이며 추후 계속적인 연구를 통해 활성 물질의 규명이 필요할 것으로 판단된다.