• Title/Summary/Keyword: multivariate analysis of variation

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Metabolite analysis in the type 1 diabetic mouse model

  • Park, Sung Jean
    • Journal of the Korean Magnetic Resonance Society
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    • v.25 no.3
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    • pp.33-38
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    • 2021
  • Type 1 diabetes mellitus (T1DM) is caused by insufficient production of insulin, which is involved in carbohydrate metabolism. Type 2 diabetes mellitus (T2DM) has insulin resistance in which cells do not respond adequately to insulin. The purpose of this study was to estimate the characteristics of type 1 diabetes using streptozotocin-treated mice (STZ-mouse). The sera samples were collected from the models of hyperglycemic mouse and healthy mouse. Based on the pair-wise comparison, five metabolites were found to be noticeable: glucose, malonic acid, 3-hyroxybutyrate, methanol, and tryptophan. It was very natural glucose was upregulated in STZ-mouse. 3-hyroxybutyrate was also increased in the model. However, malonic acid, tryptophan, and methanol was downregulated in STZ-mouse. Several metabolites acetoacetate, acetone, alanine, arginine, asparagine, histidine, lysine, malate, methionine, ornithine, proline, propylene glycol, threonine, tyrosine, and urea tended to be varied in STZ-mouse while the statistical significance was not stratified for the variation. The multivariate model of PCA clearly showed the group separation between healthy control and STZ-mouse. The most significant metabolites that contributed the group separation included glucose, citrate, ascorbate, and lactate. Lactate did not show the statistical significance of change in t-test while it tends to down-regulated both in DNP and Diabetes.

Variation of Major Isoflavone Contents in Soybeans (Glycine max (L.) Merill.) of Collection Area, Diversity, and Seed Coat Color

  • Yu-Mi Choi;Hyemyeong Yoon;Sukyeung Lee;Ho-Cheol Ko;Myoung-Jae Shin;Myung-Chul Lee;On sook Hur;Na young Ro;Kebede Taye Desta
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2020.08a
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    • pp.96-96
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    • 2020
  • Soybean seeds are important sources of non-nutritive health promoting metabolites. The contents of these metabolites are affected by both genetic and environmental factors. In the present study, the contents of five common isoflavones including daidzin, genistin, glycitin, malonyldaidzin, and malonylgenistin were analyzed in 72 soybeans of different seed coat colors, diversity, and of different origins including China (22), Japan (9), USA (12), India (4), and Korea (25). The average total isoflavone content (TIC) was maximum in Indian soybeans (3302.36 ㎍/g) and minimum in Chinese landraces (1214.95 ㎍/g). The Korean landraces had higher average TIC (2148.05 ㎍/g) than the USA genetic materials (1580.23 ㎍/g) and Japanese landraces (1485.99 ㎍/g). The content of malonylgenistin was in the range of 54.31 - 2385.68 ㎍/g in the entire population, and was the most abundant isoflavone irrespective of origin although there was content variation among individual soybeans. Besides, glycitin was the least concentrated isoflavone, and its content ranged from 0.00 to 79.79 ㎍/g. With respect to seed coat color, green soybeans from all countries displayed the maximum malonylgenistin and TIC contents. Exceptions were those of Korean and Indian origins where black and yellowish-green soybeans presented the highest malonylgenistin and TIC contents, respectively. In multivariate analysis, 92.72% of the variance was explained by the first two principal components, and the soybeans were grouped in to three clusters based on isoflavone contents. Overall, our findings signify the importance of seed coat color and origin as discriminant parameters, and provide wide spectrum of routes for breeding soybean cultivars.

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A Pilot Study Exploring Temporal Development of Gut Microbiome/Metabolome in Breastfed Neonates during the First Week of Life

  • Imad Awan;Emily Schultz;John D. Sterrett;Lamya'a M. Dawud;Lyanna R. Kessler;Deborah Schoch;Christopher A. Lowry;Lori Feldman-Winter;Sangita Phadtare
    • Pediatric Gastroenterology, Hepatology & Nutrition
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    • v.26 no.2
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    • pp.99-115
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    • 2023
  • Purpose: Exclusive breastfeeding promotes gut microbial compositions associated with lower rates of metabolic and autoimmune diseases. Its cessation is implicated in increased microbiome-metabolome discordance, suggesting a vulnerability to dietary changes. Formula supplementation is common within our low-income, ethnic-minority community. We studied exclusively breastfed (EBF) neonates' early microbiome-metabolome coupling in efforts to build foundational knowledge needed to target this inequality. Methods: Maternal surveys and stool samples from seven EBF neonates at first transitional stool (0-24 hours), discharge (30-48 hours), and at first appointment (days 3-5) were collected. Survey included demographics, feeding method, medications, medical history and tobacco and alcohol use. Stool samples were processed for 16S rRNA gene sequencing and lipid analysis by gas chromatography-mass spectrometry. Alpha and beta diversity analyses and Procrustes randomization for associations were carried out. Results: Firmicutes, Proteobacteria, Bacteroidetes and Actinobacteria were the most abundant taxa. Variation in microbiome composition was greater between individuals than within (p=0.001). Palmitic, oleic, stearic, and linoleic acids were the most abundant lipids. Variation in lipid composition was greater between individuals than within (p=0.040). Multivariate composition of the metabolome, but not microbiome, correlated with time (p=0.030). Total lipids, saturated lipids, and unsaturated lipids concentrations increased over time (p=0.012, p=0.008, p=0.023). Alpha diversity did not correlate with time (p=0.403). Microbiome composition was not associated with each samples' metabolome (p=0.450). Conclusion: Neonate gut microbiomes were unique to each neonate; respective metabolome profiles demonstrated generalizable temporal developments. The overall variability suggests potential interplay between influences including maternal breastmilk composition, amount consumed and living environment.

Exploratory Study of Generational Differences in Subjective Well-Being (세대별 주관적 안녕감: 사회적 세대의 탐색적 비교연구)

  • Kim, Yojin;Choi, Youseok
    • The Journal of the Korea Contents Association
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    • v.21 no.5
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    • pp.727-736
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    • 2021
  • Examining the experiences of different generations, this study assesses the subjective well-being(SWB) from eudaemonic perspective. Data was drawn from a survey of 1,214 adults in Korea. This research conducted descriptive statistics and multivariate regression analysis. Results show that even assessed from eudaemonic approach, material factors are still essential in explaining the variation of SWB. People in industrialization generation are less happy than other generations. Satisfaction with family and different types of social participation activities are related to SWB. This study suggests needs for focused attention on the factors affecting SWB in each generation.

Evaluation of Water Quality Characteristics at Kyeongan Stream Using the Flow-Loading Equation and Factor Analysis (유량-오염부하량 관계식과 요인분석을 이용한 경안천의 수질특성 평가)

  • Kwon, Phil-Sang;Park, Min-Ji;Lee, Young-Joon;Cho, Yong-Chul;Noh, Chang-Wan;Jung, Woo-Seok;Kim, Ji-Ho;Yu, Soon-Ju
    • Ecology and Resilient Infrastructure
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    • v.4 no.4
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    • pp.226-236
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    • 2017
  • In this study, we aimed to analyze the characteristics of water quality variation at Kyeongan Stream for a decade and to investigate by the flow-loading equation. The correlation analysis of water quality parameters and the influence factors were examined by statistical analysis. The characteristics of water quality variation showed that the fluctuations in $BOD_5$, $COD_{Mn}$ and TOC were repeated from year to year. TN and TP were decreased by year. By the flow-loading equation, the concentrations of $BOD_5$, $COD_{Mn}$, TOC and TN were decreased when the flow rate was on the rise. However, the flow did not affect the concentration of TP. According to correlation analysis, $BOD_5$ was highly correlated with $COD_{Mn}$ and TOC with the correlation coefficients of 0.890 (p<0.01) and 0.721 (p<0.01). The result of factor analysis, we identified that the water quality in Kyeongan Stream has been highly influenced by the organic matter index, followed by nitrogenous substance depending on the seasonal variations and the influx of suspended solid in accordance with the increase of flow.

Estimation of Harvest Period and Cultivated Region of Commercial Green Tea by Pattern Recognition (패턴인식법에 의한 시판 녹차의 산지 및 채엽시기 추정)

  • Zhu, Hong-Mei;Kim, Jung-Sook;Park, Kyung-Lae;Cho, Cheong-Weon;Kim, Young-Sup;Kim, Jung-Woo;Ryu, Shi-Yong;Kang, Jong-Seong
    • YAKHAK HOEJI
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    • v.53 no.2
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    • pp.51-59
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    • 2009
  • Quantitative analysis of (+)-catechin (C), (-)-epigallocatechin (EGC), (-)-epicatechin (EC), (-)-epigallocatechin gallate (EGCG), (-)-epicatechin gallate (ECG) and caffeine in commercial green tea was carried out by HPLC employing gradient elution of 0.1% acetic acid and acetonitrile on ODS column. The optimized HPLC method provided satisfactory linearity, accuracy and precision. The relationship between the concentration of the components and cultivated region of the commercial green tea was not significant, while the concentration of EGCG, ECG and caffeine decreased significantly in the later harvested green tea samples (p<0.01). Multivariate analysis of the components was performed in order to characterize and evaluate the cultivated region and harvest period-related variation. Hierarchical clustering and discriminant analysis were applied to classify the geographical and seasonal origins of the green tea samples. The classification accuracy of the cultivated region and harvest period by discriminant analysis was 95% and 91%, respectively, indicating that this method could be reliable and convenient for the quality control of herbal products with different origin.

Varietal Classification by Multivariate Analysis in Job′s Tears (Coix lachryma-jobi L. var. mayuen STAPF) (다변량 해석법에 의한 율무의 품종군 분류)

  • 권병선;박희진
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.35 no.2
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    • pp.126-131
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    • 1990
  • Sixty two Job's Tear cultivars were largely classified into ten varietal groups and every varieties. except for Group V forming the Group by one variety. uniformly formed the Groups. From Group I to Group Ⅹ respectively contained three(5%), eighteen(29%), five(8%), thirteen(21%), one(2%), five(8%), seven(11%), four(7%), two(3%) and four(7%) varieties. Group II and Group IV showed considerably large variation whereas Group Ⅷ, IV and Ⅹ showed low variation and inferiority in vigorosity and yield components. Most of the varietal Group were not associated with their geographical origin. Days to flowering and plant height among the nine characters were the largest contributors to the D$^2$ in both inter- and inter groups.

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Evaluation of Impaired Waterbody and Multivariate Analysis Using Time Series Load Curve -in Jiseok Stream Watershed- (시계열 부하 곡선을 이용한 수체손상 평가 및 다변량 분석 -지석천 유역을 대상으로-)

  • Park, Jinhwan;Kang, Taewoo;Han, Sungwook;Baek, Seunggwon;Kang, Taegu;Yoo, Jechul;Kim, Youngsuk
    • Journal of Korean Society on Water Environment
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    • v.33 no.6
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    • pp.650-660
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    • 2017
  • In this study, pollutant emission characteristics by water damage period analyzed 11 items (water temperature, pH, DO, EC, BOD, COD, TOC, SS, T-N, T-P and flow) with load duration curve, time series load curve and factor analysis for three years (2014-2016). Load duration curve is applied to judge the level of impaired waterbody and estimate impaired level by pollutants such as BOD and T-P in this study depending on variation of stream flow. Water quality standard exceeded the flow of mid-range and low-range by flow condition evaluation using load duration curve. This watershed was influenced by point source more than non-point source. Cumulative excess rate of BOD and T-P kept water quality standard for all seasons (spring, summer, autumn and winter) except BOD 59% in spring. Water quality changes were influenced by pollutants of basic environmental treatment facilities and agricultural areas during spring and summer. Results of factor analysis were classified commonly first factor (BOD, COD, and TOC) and second factor (flow, water temperature and SS). Therefore, effects of artificial pollutants and maintenance water must be controlled seasonally and reduced relative to water damage caused by point pollution sources with effluent standard strengthened in the target watershed.

Pretreatment Neutrophil/Lymphocyte Ratio as a Prognostic Aid in Colorectal Cancer

  • Ozdemir, Yavuz;Akin, Mehmet Levhi;Sucullu, Ilker;Balta, Ahmet Ziya;Yucel, Ergun
    • Asian Pacific Journal of Cancer Prevention
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    • v.15 no.6
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    • pp.2647-2650
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    • 2014
  • Background: Colorectal cancers(CRC) are the third most common cancer in the western world, with surgery preferred for management of non-metastatic disease and post surgical treatment usually arranged according to the TNM staging system. However, there is still prognostic variation between patients who have the same stage. It is increasingly recognized that variations within disease course and clinical outcome in colorectal cancer patients are influenced by not only oncological characteristics of the tumor itself but also host response factors. Recent studies have shown correlation between the inflammatory response and clinical outcomes in various cancers. The neutrophil/lymphocyte ratio (NLR) has been described as a marker for immune response to various stimuli including cancer. Material-Methods: Two hundred eighty-one CRC patients were included in our retrospective analysis, separated into two groups according to a cut-off value for the NLR. Patient data including age, gender, vertical penetration, anatomic location, and differentiation of the tumor, TNM stage, survival rate, and disease-free survival were analyzed for correlations with the NLR. Results: Using ROC curve analysis, we determined a cut-off value of 2.2 for NLR to be best to discriminate between patient survival in the whole group. In univariate analysis, high pretreatment NLR (p=0.001, 95%CI 1.483-4.846), pathologic nodal stage (p<0.001, 95%CI 1.082-3.289) and advanced pathologic TNM stage (p<0.001, 95%CI 1.462-4.213) were predictive of shorter survival. In multivariate analysis, advanced pathologic TNM stage (p=0.001, 95%CI 1.303-26.542) and high pretreatment NLR (p=0.005, 95%CI 1.713-6.378) remained independently associated with poor survival. Conclusions: High pre-treatment NLR is a significant independent predictor of shorter survival in patients with colorectal cancer. This parameter is a simple, easily accessible laboratory value for identifying patients with poorer prognosis.

Classification of Garlic Germplasms Based on Agronomic Characteristics and Multivariative Analysis (마늘 유전자원의 작물학적 특성과 다변량 분석에 의한 품종군 분류)

  • Lee, Jae Sun;Park, Young Uk;Jeong, Jae Hyun;Kwon, Young Hee;Chang, Who Bong;Lee, Hee Du
    • Korean Journal of Plant Resources
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    • v.34 no.1
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    • pp.79-88
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    • 2021
  • This research was conducted to investigate the genetic diversity and select useful accession with agronomic characteristics of garlic (Allium sativum L.). germplasms at Garlic Research Institute in Chungbuk Agricultural Research and Extension Service. Morphological diversity and relationships among 160 germplasms collected from 26 countries were assessed by methods of clustering and principal component analysis. Among 11 types of leaves and bulbs characteristics, emergence days of leaf showed the highest variation with coefficient of variation of 84.8%, and the bulb weight and the number of scales showed higher variability with 24.3%. Correlation analysis based on 11 quantitative traits showed that bulb weight and bulb length have very high positive correlation with bulb quantity. Plant height, leaf length, and number of leaves showed positive correlation with bulb weight as collections with better performance in growth produced large bulb with higher quality. The cluster analysis based on 5 principal components generated 6 clusters with an average distance of 1.6 among clusters. Domestic genetic resources were the largest with 36 species (22.5%) in group II.