• 제목/요약/키워드: molecular distribution

검색결과 1,406건 처리시간 0.042초

Screening of Rice Germplasm for the Distribution of Rice Blast Resistance Genes and Identification of Resistant Sources

  • Ali, Asjad;Hyun, Do-Yoon;Choi, Yu-Mi;Lee, Sukyeung;Oh, Sejong;Park, Hong-Jae;Lee, Myung-Chul
    • 한국자원식물학회지
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    • 제29권6호
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    • pp.658-669
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    • 2016
  • Rice blast, caused by a fungus Magnaporthe oryzae, is one of the most devastating diseases of rice worldwide. Analyzing the valuable genetic resources is important in making progress towards blast resistance. Molecular screening of major rice blast resistance (R) genes was determined in 2,509 accessions of rice germplasm from different geographic regions of Asia and Europe using PCR based markers which showed linkage to twelve major blast R genes, Pik-p, Pi39, Pit, Pik-m, Pi-d(t)2, Pii, Pib, Pik, Pita, Pita/Pita-2, Pi5, and Piz-t. Out of 2,509 accessions, only two accessions had maximum nine blast resistance genes followed by eighteen accessions each with eight R genes. The polygenic combination of three genes was possessed by maximum number of accessions (824), while among others 48 accessions possessed seven genes, 119 accessions had six genes, 267 accessions had five genes, 487 accessions had four genes, 646 accessions had two genes, and 98 accessions had single R gene. The Pik-p gene appeared to be omnipresent and was detected in all germplasm. Furthermore, principal component analysis (PCA) indicated that Pita, Pita/Pita-2, Pi-d(t)2, Pib and Pit were the major genes responsible for resistance in the germplasm. The present investigation revealed that a set of 68 elite germplasm accessions would have a competitive edge over the current resistance donors being utilized in the breeding programs. Overall, these results might be useful to identify and incorporate the resistance genes from germplasm into elite cultivars through marker assisted selection in rice breeding.

Functional PstI/RsaI Polymorphisms in the CYP2E1 Gene among South Indian Populations

  • Lakkakula, Saikrishna;Maram, Rajasekhar;Munirajan, Arasambattu Kannan;Pathapati, Ram Mohan;Visweswara, Subrahmanyam Bhattaram;Lakkakula, Bhaskar V.K.S.
    • Asian Pacific Journal of Cancer Prevention
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    • 제14권1호
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    • pp.179-182
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    • 2013
  • Human cytochrome P4502E1 (CYP2E1) is a well-conserved xenobiotic-metabolizing enzyme expressed in liver, kidney, nasal mucosa, brain, lung, and other tissues. CYP2E1 is inducible by ethanol, acetone, and other low-molecular weight substrates and may mediate development of chemically-mediated cancers. CYP2E1 polymorphisms alter the transcriptional activity of the gene. This study was conducted in order to investigate the allele frequency variation in different populations of Andhra Pradesh. Two hundred and twelve subjects belonging to six populations were studied. Genotype and allele frequency were assessed through TaqMan allelic discrimination (rs6413419) and polymerase chain reaction-sequencing (-1295G>C and -1055C>T) after DNA isolation from peripheral leukocytes. The data were compared with other available world populations. The SNP rs6413419 is monomorphic in the present study, -1295G>C and -1055C>T are less polymorphic and followed Hardy-Weinberg equilibrium in all the populations studied. The -1295G>C and -1055C>T frequencies were similar and acted as surrogates in all the populations. Analysis of HapMap populations data revealed no significant LD between these markers in all the populations. Low frequency of $CYP2E1^*c2$ could be useful in the understanding of south Indian population gene composition, alcohol metabolism, and alcoholic liver disease development. However, screening of additional populations and further association studies are necessary. The heterogeneity of Indian population as evidenced by the different distribution of $CYP2E1^*c2$ may help in understanding the population genetic and evolutionary aspects of this gene.

Temporal and Spatial Distribution of Particulate Carcinogens and Mutagens in Bangkok, Thailand

  • Pongpiachan, Siwatt;Choochuay, C.;Hattayanone, M.;Kositanont, C.
    • Asian Pacific Journal of Cancer Prevention
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    • 제14권3호
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    • pp.1879-1887
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    • 2013
  • To investigate the level of genotoxicity over Bangkok atmosphere, $PM_{10}$ samples were collected at the Klongchan Housing Authority (KHA), Nonsree High School (NHS), Watsing High School (WHS), Electricity Generating Authority of Thailand (EGAT), Chokchai 4 Police Station (CPS), Dindaeng Housing Authority (DHA) and Badindecha High School (BHS). For all monitoring stations, each sample covered a period of 24 hours taken at a normal weekday every month from January-December 2006 forming a database of 84 individual air samples (i.e. $12{\times}7=84$). Atmospheric concentrations of low molecular weight PAHs (i.e. phenanthrene, anthracene, pyrene and fluoranthene) were measured in $PM_{10}$ at seven observatory sites operated by the pollution control department of Thailand (PCD). The mutagenicity of extracts of the samples was compared in Salmonella according to standard Ames test method. The dependence of the effects on sampling time and on sampling location was investigated with the aid of a calculation of mutagenic index (MI). This MI was used to estimate the increase in mutagenicity above background levels (i.e. negative control) at the seven monitoring sites in urban area of Bangkok due to anthropogenic emissions within that area. Applications of the AMES method showed that the average MI of $PM_{10}$ collected at all sampling sites were $1.37{\pm}0.10$ (TA98; +S9), $1.24{\pm}0.08$ (TA98; -S9), $1.45{\pm}0.10$ (TA100; +S9) and $1.30{\pm}0.09$ (TA100; -S9) with relatively less variations. Analytical results reconfirm that the particulate PAH concentrations measured at PCD air quality monitoring stations are moderately low in comparison with previous results observed in other countries. In addition, the concept of incremental lifetime particulate matter exposure (ILPE) was employed to investigate the potential risks of exposure to particulate PAHs in Bangkok atmosphere.

狀移動重合. Tetrabutylammonium Bromide 존재하에서 Diphenoxides와 1,6-Dibromohexane의 二狀重縮合反應 (Phase Transfer Polymerization. Two Phase Polycondensation of Diphenoxides and 1,6-Dibromohexane in the Presence of Tetrabutylammonium Bromide)

  • 진정일;정용운;이광섭;정근우
    • 대한화학회지
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    • 제23권4호
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    • pp.259-266
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    • 1979
  • 수용액상에 존재하는 2,2-비스(4-히드록시페닐)프로판, 황화비스(4-히드록시페닐) 및 비스(4-히드록시페닐)술폰의 음이온과 니트로벤젠속에 존재하는 1,6-디브르모헥산을 브롬화테트라부틸 암모늄을 상이동 촉매로 사용하여 반응시켜 새로운 폴리에테르를 합성하였다. 중합속도는 교반속도와 촉매량에 의존하였으나 어느정도 이상에서는 영향을 받지 않았다. 분배실험으로 부터 친수성 음이온이 촉매에 의하여 니트로벤젠 층으로 상이동함을 확증하였으며 일부 중합체의 본성점성도 (0.09∼0.16), 수평균분자량 (2400∼4800) 및 열안정성등을 조사하였다. 이와같은 중합 메카니즘은 소위 interfacial polymerization의 메카니즘과 다르며, 이를 구별하기 위하여 "상이동 중합''(phase transfer polymerization) 이란 용어를 사용할 것을 제안한다.

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Platelet volume indices in patients with varicocele

  • Mahdavi-Zafarghandi, Reza;Shakiba, Behnam;Keramati, Mohammad Reza;Tavakkoli, Mahmoud
    • Clinical and Experimental Reproductive Medicine
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    • 제41권2호
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    • pp.92-95
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    • 2014
  • Objective: This study sought to evaluate platelet volume indices (mean platelet volume [MPV], platelet distribution width [PDW], and platelet large cell ratio [P-LCR]) in varicocele patients, and compare it with platelet volume parameters in healthy controls. Methods: This cross-sectional study involved 2 groups: group 1 included 51 varicocele subjects and group 2 consisted of 50 healthy control subjects of similar ages. Peripheral venous blood samples were collected with ethylenediaminetetraacetic acid-K2 anticoagulant between 8:30 AM and 10 AM following an overnight fast. Platelet volume parameters (MPV, PDW, and P-LCR) were measured in both groups within 2 hours of sampling. Results: The mean PDW, MPV, and P-LCR were $13.9{\pm}2.5%$, $10.1{\pm}1.3fL$, and $27.3{\pm}7.8%$ in varicocele patients, respectively, and were $12.6{\pm}2.4%$, $9.3{\pm}1.1fL$, and $21.9{\pm}6.4%$ in the control group, respectively. The mean PDW, MPV, and P-LCR were significantly higher in the varicocele group than the control group. Conclusion: The results of the present study suggest that vascular components may play an important role in the pathophysiology of varicocele; therefore, there is a great need for prospective studies to confirm this relationship.

급성위장관염 환자에서 검출된 노로 바이러스 Genogroup-I과 Genogroup-II의 분자생물학적 특성 (Molecular Characteristics of Human Noroviruses Genogroup I and Genogroup II Detected in Acute Gastroenteritis Patients in Seoul)

  • 함희진;오세아;김창규;장정임;조석주;최성민
    • 한국환경보건학회지
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    • 제38권1호
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    • pp.57-65
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    • 2012
  • Objectives: For our survey of the incidence of norovirus infections and the genogroup distribution of norovirus in Seoul, Republic of Korea, we evaluated through regular surveillance the prevalence of norovirus infections in patients with acute gastroenteritis occurring in Seoul from January 2007 to July 2011. Methods: For norovirus detection, we conducted epidemiological analyses on the basis of the junction of ORF1 and ORF2 (approximately 314 bp). 11,202 fecal specimens were collected from patients in Seoul with acute gastroenteritis between January 2007 and July 2011 and then tested for the presence of NoV via reverse transcription (RT) - polymerase chain reaction (PCR). Results: 16.6% (1,861/11,202) of the fecal specimens were determined to be positive for noroviruses. The incidences of norovirus infection in Seoul in the case of acute gastroenteritis with regular surveillance were 28.0% in 2007, 14.6% in 2008, 9.1% in 2009, 14.1% in 2010, and 12.9% in 2011, which shows that noroviruses constituted a major causative agent of acute gastroenteritis. Also, the incidence of noroviral infection in patients with acute gastroenteritis increased after the large-scale new influenza in 2009. Conclusions: The genetic characteristics of norovirus and the epidemiologic patterns of a viral pathogen in acute gastroenteritis patients may provide potentially effective data for epidemiological studies in Seoul, Korea.

Chemical Differentiation of $C^{34}S$ and $N_2H^+$ in Dense Starless Cores

  • Kim, Shinyoung;Lee, Chang Won;Sohn, Jungjoo;Kim, Gwanjeong;Kim, Mi-Ryang
    • 천문학회보
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    • 제39권2호
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    • pp.75.2-75.2
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    • 2014
  • CS molecule as an important tracer for studying inward motions in dense cores is known to be adsorbed onto dusts in cold (T~10K) dense cores, resulting in its significant depletion in the central region of the cores which may hamper a proper study of kinematics stage of star formation. In this study we choose five 'evolved' dense starless cores, L1544, L1552, L1689B, L694-2 and L1197, to investigate how depletion of CS molecule is significant and how the molecule differentiates depending on the evolutional status of the dense cores, by using a rare isotopomer C34S. We performed mapping observations in C34S (J=2-1) and N2H+ (J=1-0) with Nobeyama 45 m telescope, and compared $850{\mu}m$ continuum data as a reference of the density distribution of the dense cores. Our data confirm the claim that CS molecule generally depletes out in the central region in dense starless cores, while N2H+ keeps abundant as they get evolved. All of integrated intensity maps show 'semi-ring-like' depletion holes in CS, and all of abundance radial profiles show decrease toward center. The CS depletion and molecular chemical differentiation seems to depend on the evolutional status in dense cores. The evolved cores shows low abundance at both central and outer regions, implying that in the case of highly evolved cores CS freeze-out occurs over the most area of the cores.

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Citrate Process를 이용한 BaCeO3 나노 분말의 저온 합성 (Low Temperature Synthesis of BaCeO3 Nano Powders by the Citrate Process)

  • 이동욱;원종한;주경;김창열;심광보
    • 한국세라믹학회지
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    • 제39권6호
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    • pp.604-609
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    • 2002
  • 분자 단위의 균일한 조성을 가지는 $BaCeO_3$ 나노 분말을 Pechini법에 기초한 citrate 공정을 통하여 합성하였다. 금속 이온의 chelating제로서 citric acid를, 반응 촉매로서는 ethylen glycol을 각각 사용하여 고분자 전구체를 형성시켰고, 이를 기반으로 $900^{\circ}C$의 온도에서 4시간동안 열처리하여 약 100nm의 균일한 크기와 형상을 가진, 사방정 구조의 단일상 $BaCeO_3$ 분말을 합성하는데 성공하였다. 잔존하는 미량의 $CO_3^{2-}$$1100^{\circ}C$ 이상의 온도에서 완전히 분해되었고, 이 때 평균 입도 는 약 2배 증가하였으나 매우 균일한 분포를 나타내었다.

상용 순환 유동층 연소로 수관벽 전열관 마모속도 (Tube Erosion Rate of Water Wall in a Commercial Circulating Fluidized Bed Combustor)

  • 김태우;최정후;선도원;손재익;정봉진;김수섭;김상돈
    • Korean Chemical Engineering Research
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    • 제43권4호
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    • pp.525-530
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    • 2005
  • 상용 순환 유동층 연소로(200 ton steam/hr, $4.97{\times}9.90{\times}28.98m$)의 수관벽에서 전열관의 마모속도를 측정 및 고찰하였다. 전열관의 두께는 초음파 측정방법을 이용하여 측정되었다. Splash 영역에서 윙월을 포함한 모든 수관벽 전열관의 마모속도가 두드러졌다. 전열관의 마모속도는 분배기로부터 높이가 증가함에 따라서 감소한 후 다시 증가하였다. 프리보드 기체출구 부근의 윙월에서는 기체 및 고체흐름의 편향성으로 인한 마모속도의 차이도 나타났다. 윙월의 마모속도는 연소로 단면의 중앙에 위치할수록 크게 나타났다.

마산만의 하수기인 유기물 fecal sterol의 분포 (Distribution of sewage-derived organic matter using fecal sterol in Masan Bay, Korea)

  • 최민규;문효방;김상수;이윤
    • 한국환경과학회지
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    • 제14권5호
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    • pp.481-490
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    • 2005
  • Surface sediments and seawater were sampled at Masan and Haengam Bays of Korea, to evaluate contamination by sewage-derived organic matter using fecal sterols, Six stream-water samples into Masan and Haengam Bays were also sampled. Total concentrations of eight sterols (coprostanol, epichloestanol, epicoprostanol, cholesterol, cholestanol, brassicasterol, stigmasterol and $\beta-sitosterol$) were in the range of $1,274\~4,768{\mu}g/g$ dry weight in suspended particulate from the stream-water, $292\~2,244{\mu}g/g$ dry weight in suspended particulate from the seawater and $4.5\~27.2{\mu}g/g$ dry weight in the sediments. Although sterol compositions in sediments, seawater and stream-water were different, cholesterol was the predominant sterol in all samples. The proportion and concentration of coprostanol, a sewage tracer, in stream-water was much higher than those in sediment and seawater. The sterol levels including coprostanol in the sediments and seawater were higher at inner basin than at the outer bay. Some molecular indices and multivariate statistical analysis were used to assess the origin of these sterols and sewage contamination in the study area. The sterol composition patterns in stream-water were mainly associated with contamination by sewage-derived organic matters and those of seawater were associated with the activities of marine-originated organisms. Sterol levels in the sediments were both from the sewage input through stream-water and the marine- originated organisms. This survey suggests that the main source/route of sewage-derived organic matters in Masan Bay is the input of stream-water into the bay.