• Journal of Microbiology and Biotechnology
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• v.8 no.5
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• pp.490-496
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• 1998

Random amplified polymorphic DNA (RAPD) markers were used to survey genetic variability among 34 Botrytis cinerea isolates from nine different host plants in Korea. For RAPD analysis, 115 arbitrary decamer primers were initially screened for polymorphic major DNA bands with 11 representative B. cinerea isolates. Eleven primers that initially detected polymorphisms were tested a second time with additional 23 isolates of B. cinerea as well as one isolate of Botrytis squamosa as an outgroup. The RAPD analyses revealed that all isolates except one showed different molecular phenotypes. Dendrograms obtained from dissimilarity matrices using the unweighted paired group method of arithmetic means (UPGMA) showed the 36.4% to 90.0% similarity among all B. cinerea isolates. The B. squamosa isolate showed the least similarity to all B. cinerea isolates. The cluster analyses indicated no correlation among all the characteristics examined including molecular phenotypes, host and geographic origins, year of isolation, or pathogenicity. The RAPD data suggest that a high level of genetic variation exists among Korean populations of B. cinerea and it seems to be caused by heterokaryosis among preexisting molecular phenotypes.

• Korean Journal of Plant Resources
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• v.27 no.6
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• pp.671-679
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• 2014

Molecular phylogenetic analyses of Korean Elaeagnus L. were conducted using seven species, one variety, one forma and four outgroups to evaluate their relationships and phylogeny. The sequences of internal transcribed spacer regions in nuclear ribosomal DNA were employed to construct phylogenetic relationships using maximum parsimony (MP) and Bayesian analysis. Molecular phylogenetic analysis revealed that Korean Elaeagnus was a polyphyly. E. umbellata var. coreana formed a subclade with E. umbellata. Additionally, the genetic difference between E. submacrophylla and E. macrophylla was very low. Moreover, E. submacrophylla formed a branch from E. macrophylla, indicating that E. submacrophylla can be regarded as a variety. However, several populations of this species were not clustered as a single clade; therefore, further study should be conducted using other molecular markers. Although E. glabra f. oxyphylla was distinct in morphological characters of leaf shape with E. glabra. But E. glabra f. oxyphylla was formed one clade by molecular phylogenetic with E. glabra. Additionally, this study clearly demonstrated that E. pungens occurs in Korea, although it was previously reported near South Korea in Japan and China. According to the results of ITS regions analyses, it showed a resolution and to verify the relationship between interspecies of Korean Elaeagnus.

• Korean Journal of Environmental Biology
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• v.38 no.1
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• pp.101-105
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• 2020

Ralfsia longicellularis is known as an endemic species in Far East Asia. In this study, we report R. longicellularis as a new record from Korea based on morphological and molecular analyses. Molecular analyses based on plastid-encoded rbcL gene sequences and morpho-anatomical studies were undertaken on Ralfsia species, a poorly studied genus from Korea. Ralfsia longicellularis is mainly characterized by a dark brown thallus; 770-1200 ㎛ thick, curved cells in the creeping and ascending parts of the filaments; basal layer and erect filament cells with a width-to-length ratio of 1 : 1.5 to 10; narrowshaped sporangia on-stalk cells at the base of the paraphyses; and mostly uniseriate plurilocular reproductive organs capped with 1-2 sterile cells. The R. longicellularis samples from Korea in this study were similar to ones collected from the type locality (Peter the Great Bay, Russia) in morphology. The rbcL analyses also revealed that our Korean R. longicellularis samples were placed in the same clade with Russian materials, within a Ralfsia clade but distinct from the congeners.

• Journal of Ecology and Environment
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• v.37 no.4
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• pp.379-385
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• 2014

Two marine ulvalean species (Chlorophyta) were collected from the southern and eastern coasts of Korea. One is morphologically characterized by usually unbranched or little branched ribbon-shaped thalli, fronds with spirally twisted basal portions and usually undulate margins and 1 (-2) pyrenoids per cell. The other has irregularly shaped thalli, undulate and dentate margins in the fronds, small macroscopic denticulations along the margin and (1-) 2-3 pyrenoids per cell. In phylogenetic tree based on molecular data, the two species nest in the same clade with Ulva flexuosa and U. rigida, respectively. These two Korean entities are identified as U. flexuosa and U. rigida, respectively, based on morphological and molecular analyses. This is the first record of Ulva flexuosa and U. rigida in Korea.

• Korean Journal of Environmental Biology
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• v.37 no.3
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• pp.362-366
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• 2019

A marine green algal species (Chlorophyta) was collected from the eastern coast of Korea. It is morphologically characterized by monostromatic thallus, usually undulate and entire margins, cap-like chloroplast and several pyrenoids per cell. In a phylogenetic tree based on molecular data, the Korean alga nests in the same clade as Monostroma alittorale originally described from Japan, as a sister clade of M. grevillei from France. The genetic distance for ITS(Internal Transcribed Spacer) sequences among Monostroma species ranges from 2.3% to 38.2%. The value between the Korean entity and M. alittorale was calculated as 0.01%, considered to be intraspecific divergence. This Korean entity is identified as Monostroma alittorale based on morphological and molecular analyses. This is the first record of M. alittorale in Korea.

• Korean Journal of Environmental Biology
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• v.37 no.3
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• pp.278-284
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• 2019

Feldmannia chitonicola is reported as a new record from Korea based on morphological studies in laboratory-cultured materials and molecular analyses. F. chitonicola is mainly characterized by a small size (1-2 mm), erect filaments mostly unbranched, plurilocular sporangia produced on both prostrate and laterally on the basal part of erect filaments, and 2 types (lanceolate and ovate) of sporangia. In our cultures, sporangia production was slower at 10℃ than in 16℃ and 20℃. Our molecular analyses of rbcL and cox1 genes supported its independence from other congeners reported for Korea. This is the first report of F. chitonicola for western Pacific.

• Mycobiology
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• v.50 no.2
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• pp.150-154
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• 2022

Rhytisma lonicericola was identified as a tar spot fungus on Lonicera sp. in 1902, and has since been recorded on several species of Lonicera in China, Japan, and Korea. Most of the previous records of R. lonicericola have been based on a list of disease occurrences in the absence of any formal morphological identification or molecular analyses. Using six newly obtained specimens collected in the past 2 years, we confirmed the tar spot fungus found on L. japonica in Korea as R. lonicericola based on morphological examinations and molecular phylogenetic analyses. This fungus was distinguished from R. xylostei, another tar spot fungus on Lonicera, by ascospore size and geographical distributions. We present detailed mycological information and, for the first time, DNA sequence data useful for the identification of R. lonicericola.

• Journal of Microbiology and Biotechnology
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• v.16 no.5
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• pp.799-803
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• 2006

It was reported that an accumulation of Sadenosyl-L-methionine increases production of actinorhodin in Streptomyces lividans and induces antibiotic biosynthetic genes. We also obtained the same result in Streptomyces coelicolor A3(2). Therefore, in order to identify proteins changed by the addition of S-adenosyl-L-methionine in S. coelicolor A3(2), LC/MS/MS analyses were carried out. Thirteen proteins that were not observed in the control were found.

• Genomics & Informatics
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• v.11 no.4
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• pp.282-288
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• 2013

The molecular vibration-activity relationship in the receptor-ligand interaction of adenosine receptors was investigated by structure similarity, molecular vibration, and hierarchical clustering in a dataset of 46 ligands of adenosine receptors. The resulting dendrogram was compared with those of another kind of fingerprint or descriptor. The dendrogram result produced by corralled intensity of molecular vibrational frequency outperformed four other analyses in the current study of adenosine receptor agonism and antagonism. The tree that was produced by clustering analysis of molecular vibration patterns showed its potential for the functional classification of adenosine receptor ligands.

• ALGAE
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• v.33 no.1
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• pp.69-84
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• 2018

We examined the species diversity of Herposiphonia on Korean coasts, based on a combination of morphology and molecular analyses of the mitochondrial COI-5P DNA barcode marker and plastid rbcL gene. We report the presence of eight species including three novel species: H. donghaensis sp. nov., H. jejuinsula sp. nov., H. sparsa sp. nov., H. caespitosa, H. fissidentoides, H. insidiosa, H. parca, and H. subdisticha. Specimens were separated into eight clades in both the COI-5P and rbcL gene analyses, with 1.3-19.6 and 6.6-15% interspecific sequence divergence, respectively. These eight species are also distinguishable by several morphological characteristics such as: branching pattern (d/i pattern in H. donghaensis sp. nov. and H. sparsa sp. nov.; d/d/d/i pattern in others), shape of determinate branch (ligulate in H. fissidentoides; terete in others), number of vegetative trichoblasts (1-2 in H. insidiosa and H. sparsa sp. nov.; 3-4 in H. caespitosa; absent in others), and number of segments and pericentral cells in determinate branches. About three novel species revealed by our analyses, H. donghaensis sp. nov. is newly discovered, and H. jejuinsula sp. nov. and H. sparsa sp. nov. were previously reported in Korea as H. nuda and H. secunda, respectively. Our results show that DNA barcoding and rbcL analyses are useful for delimiting species boundaries and discovering cryptic species diversity in the genus Herposiphonia.